Wall clock time and date at job start Tue Mar 31 2020 20:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47154 * 2 1 4 4 N 1.46901 * 109.47514 * 180.02562 * 3 2 1 5 5 C 1.46900 * 110.99955 * 66.04503 * 4 3 2 6 6 C 1.46896 * 111.00033 * 189.99864 * 4 3 2 7 7 C 1.50703 * 109.47080 * 169.99607 * 6 4 3 8 8 O 1.21284 * 119.99755 * 0.02562 * 7 6 4 9 9 N 1.34776 * 120.00106 * 179.97438 * 7 6 4 10 10 C 1.46499 * 119.99893 * 180.02562 * 9 7 6 11 11 H 1.08998 * 110.64355 * 34.30279 * 10 9 7 12 12 C 1.54319 * 110.72186 * 271.15706 * 10 9 7 13 13 N 1.47018 * 107.27428 * 219.44626 * 12 10 9 14 14 C 1.36936 * 125.64997 * 178.91125 * 13 12 10 15 15 H 1.07996 * 120.00183 * 174.90709 * 14 13 12 16 16 C 1.38820 * 119.99965 * 354.89906 * 14 13 12 17 17 N 1.31620 * 119.99765 * 7.06928 * 16 14 13 18 18 Si 1.86794 * 120.00030 * 187.06768 * 16 14 13 19 19 H 1.48504 * 109.47075 * 94.98874 * 18 16 14 20 20 H 1.48501 * 109.47253 * 214.98677 * 18 16 14 21 21 H 1.48499 * 109.47241 * 334.99321 * 18 16 14 22 22 C 1.47425 * 108.70114 * 358.94157 * 13 12 10 23 23 C 1.55120 * 104.94490 * 24.00182 * 22 13 12 24 24 H 1.08993 * 111.16535 * 205.13019 * 23 22 13 25 25 N 1.46500 * 110.93203 * 81.21384 * 23 22 13 26 26 C 1.35310 * 125.87073 * 332.95871 * 25 23 22 27 27 C 1.35353 * 106.17649 * 180.02562 * 26 25 23 28 28 N 1.33769 * 106.49607 * 359.97438 * 27 26 25 29 29 N 1.28636 * 108.88623 * 359.73973 * 28 27 26 30 30 H 1.08992 * 109.47164 * 300.00317 * 1 2 3 31 31 H 1.09002 * 109.46708 * 59.99960 * 1 2 3 32 32 H 1.08996 * 109.46684 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47640 * 240.00160 * 2 1 3 34 34 H 1.08998 * 109.47364 * 119.99408 * 2 1 3 35 35 H 1.09004 * 109.47372 * 59.99339 * 3 2 1 36 36 H 1.09007 * 109.47098 * 300.00084 * 3 2 1 37 37 H 1.09003 * 109.47317 * 183.95826 * 5 4 3 38 38 H 1.08996 * 109.47260 * 63.95117 * 5 4 3 39 39 H 1.09006 * 109.47006 * 303.95232 * 5 4 3 40 40 H 1.09001 * 109.47384 * 289.99775 * 6 4 3 41 41 H 1.08998 * 109.47303 * 49.99816 * 6 4 3 42 42 H 0.97003 * 119.99715 * 0.02562 * 9 7 6 43 43 H 1.09000 * 109.88346 * 338.86697 * 12 10 9 44 44 H 1.09007 * 109.88048 * 100.02368 * 12 10 9 45 45 H 0.97000 * 119.99565 * 179.97438 * 17 16 14 46 46 H 1.09001 * 110.36455 * 142.96957 * 22 13 12 47 47 H 1.09008 * 110.36622 * 265.17965 * 22 13 12 48 48 H 1.08004 * 126.91099 * 0.02562 * 26 25 23 49 49 H 1.08000 * 126.75272 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4426 -0.0006 5 6 4.0350 0.8860 -1.2542 6 6 4.0355 2.7932 0.2375 7 6 5.5219 2.7184 0.4743 8 8 6.0871 1.6456 0.4469 9 7 6.2234 3.8437 0.7155 10 6 7.6684 3.7710 0.9451 11 1 8.1137 2.9785 0.3437 12 6 7.9732 3.5568 2.4426 13 7 9.1469 4.3789 2.7712 14 6 9.7253 4.4862 4.0078 15 1 10.6362 5.0532 4.1305 16 6 9.1407 3.8662 5.1036 17 7 8.1121 3.0627 4.9339 18 14 9.8138 4.1723 6.8190 19 1 9.0387 5.2601 7.4680 20 1 9.6958 2.9311 7.6258 21 1 11.2418 4.5690 6.7269 22 6 9.5976 5.0693 1.5490 23 6 8.3419 5.1352 0.6407 24 1 8.6201 5.2077 -0.4106 25 7 7.4725 6.2484 1.0297 26 6 7.3832 6.7900 2.2664 27 6 6.4680 7.7832 2.1780 28 7 6.0480 7.8008 0.9080 29 7 6.6665 6.8831 0.2522 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5137 0.8900 35 1 1.6766 1.9564 0.8899 36 1 1.6767 1.9564 -0.8900 37 1 5.1224 0.8327 -1.2002 38 1 3.7435 1.5264 -2.0866 39 1 3.6293 -0.1143 -1.4060 40 1 3.8372 3.4191 -0.6326 41 1 3.5494 3.2236 1.1130 42 1 5.7713 4.7017 0.7370 43 1 7.1200 3.8718 3.0434 44 1 8.1928 2.5055 2.6295 45 1 7.7039 2.6292 5.6996 46 1 9.9475 6.0736 1.7878 47 1 10.3880 4.4990 1.0608 48 1 7.9320 6.4901 3.1470 49 1 6.1415 8.4341 2.9756 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001129403753.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:28 Heat of formation + Delta-G solvation = 111.892892 kcal Electronic energy + Delta-G solvation = -30521.453791 eV Core-core repulsion = 26522.552031 eV Total energy + Delta-G solvation = -3998.901759 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.94794 -39.80411 -38.21002 -37.05131 -34.16711 -33.40626 -33.27372 -31.76192 -30.55226 -29.38699 -28.25911 -27.26311 -26.97490 -24.89655 -23.43334 -22.54868 -22.19878 -20.96415 -20.68324 -20.13334 -19.85734 -17.70283 -17.20438 -16.87383 -16.07726 -15.91725 -15.48567 -15.33975 -14.88742 -14.60261 -14.46464 -14.33596 -14.14842 -13.83697 -13.57264 -13.41627 -13.05995 -12.72320 -12.50196 -12.40692 -12.21108 -12.04830 -11.78793 -11.75915 -11.52731 -11.35524 -11.25035 -11.20912 -11.09465 -10.86965 -10.70275 -10.62036 -10.54917 -10.23107 -10.00241 -9.76008 -9.51441 -8.96385 -8.83827 -8.67076 -8.33396 -7.14463 -5.92466 -3.31196 1.99392 2.63412 2.90902 2.92422 3.20295 3.28953 3.34925 3.37876 3.96788 4.29565 4.51511 4.72798 4.75531 4.87865 4.89198 4.96757 5.06708 5.14332 5.20482 5.27177 5.32431 5.35760 5.39369 5.43315 5.50954 5.60383 5.61547 5.65171 5.73294 5.79304 5.83484 5.84199 5.99312 6.05992 6.07611 6.14542 6.17816 6.20524 6.53279 6.60204 6.85759 7.00719 7.04772 7.29076 7.35742 7.62608 7.73860 7.97543 8.51107 8.85348 8.95290 9.55417 10.15453 11.17405 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.010409 B = 0.003582 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2689.426027 B = 7815.558207 C = 9176.673378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C 0.055 3.945 4 N -0.523 5.523 5 C 0.017 3.983 6 C 0.038 3.962 7 C 0.518 3.482 8 O -0.517 6.517 9 N -0.719 5.719 10 C 0.114 3.886 11 H 0.110 0.890 12 C 0.168 3.832 13 N -0.601 5.601 14 C -0.248 4.248 15 H 0.083 0.917 16 C 0.004 3.996 17 N -0.908 5.908 18 Si 0.912 3.088 19 H -0.286 1.286 20 H -0.290 1.290 21 H -0.280 1.280 22 C 0.128 3.872 23 C 0.113 3.887 24 H 0.119 0.881 25 N -0.276 5.276 26 C -0.004 4.004 27 C -0.076 4.076 28 N -0.278 5.278 29 N -0.112 5.112 30 H 0.055 0.945 31 H 0.051 0.949 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.032 0.968 37 H 0.089 0.911 38 H 0.018 0.982 39 H 0.069 0.931 40 H 0.061 0.939 41 H 0.102 0.898 42 H 0.396 0.604 43 H 0.059 0.941 44 H 0.058 0.942 45 H 0.257 0.743 46 H 0.059 0.941 47 H 0.053 0.947 48 H 0.204 0.796 49 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.756 0.875 -10.150 13.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.073 4.073 4 N -0.247 5.247 5 C -0.131 4.131 6 C -0.094 4.094 7 C 0.304 3.696 8 O -0.392 6.392 9 N -0.372 5.372 10 C 0.007 3.993 11 H 0.128 0.872 12 C 0.042 3.958 13 N -0.329 5.329 14 C -0.375 4.375 15 H 0.101 0.899 16 C -0.194 4.194 17 N -0.553 5.553 18 Si 0.742 3.258 19 H -0.213 1.213 20 H -0.216 1.216 21 H -0.205 1.205 22 C 0.001 3.999 23 C 0.009 3.991 24 H 0.137 0.863 25 N -0.069 5.069 26 C -0.155 4.155 27 C -0.233 4.233 28 N -0.145 5.145 29 N -0.091 5.091 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.050 0.950 37 H 0.108 0.892 38 H 0.036 0.964 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.120 0.880 42 H 0.231 0.769 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.067 0.933 46 H 0.077 0.923 47 H 0.070 0.930 48 H 0.221 0.779 49 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -8.785 -0.215 -11.012 14.088 hybrid contribution 0.331 0.897 1.484 1.766 sum -8.454 0.682 -9.528 12.756 Atomic orbital electron populations 1.21736 0.95678 1.01719 1.01699 1.21538 0.95161 0.96259 1.02986 1.22211 0.86741 0.97599 1.00748 1.61612 1.07026 1.19905 1.36127 1.22614 1.03069 0.99251 0.88167 1.21950 0.93394 0.91387 1.02629 1.20342 0.88910 0.83946 0.76443 1.90674 1.71087 1.27865 1.49586 1.45847 1.08480 1.09749 1.73109 1.22807 0.80159 0.94625 1.01737 0.87229 1.21649 0.90830 0.96748 0.86552 1.44489 1.32873 1.51339 1.04204 1.18987 1.06499 1.29796 0.82207 0.89925 1.24873 0.97753 0.98633 0.98174 1.69968 1.24423 1.31405 1.29506 0.86112 0.78245 0.77404 0.84037 1.21342 1.21626 1.20506 1.21966 0.91518 0.98243 0.88214 1.23397 0.91478 0.82914 1.01283 0.86345 1.47270 1.28299 1.23816 1.07503 1.24205 1.02976 0.96822 0.91536 1.23544 1.01089 1.02536 0.96102 1.75002 1.20461 1.14222 1.04795 1.78209 1.05174 1.05762 1.19918 0.92617 0.92983 0.92551 0.91903 0.90859 0.90706 0.94976 0.89242 0.96393 0.91268 0.92117 0.87997 0.76893 0.92263 0.92424 0.93289 0.92268 0.92953 0.77922 0.79870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.91 37.16 0.37 -0.80 16 2 C -0.12 -1.17 5.87 -26.73 -0.16 -1.33 16 3 C 0.05 0.58 4.96 -3.82 -0.02 0.56 16 4 N -0.52 -7.04 4.50 -244.36 -1.10 -8.14 16 5 C 0.02 0.21 9.01 60.06 0.54 0.75 16 6 C 0.04 0.51 5.45 -4.98 -0.03 0.48 16 7 C 0.52 8.72 7.55 -10.98 -0.08 8.64 16 8 O -0.52 -10.39 13.99 5.55 0.08 -10.31 16 9 N -0.72 -11.80 5.07 -52.03 -0.26 -12.06 16 10 C 0.11 1.98 3.14 -66.10 -0.21 1.77 16 11 H 0.11 1.92 7.62 -51.93 -0.40 1.52 16 12 C 0.17 3.68 4.77 -3.07 -0.01 3.67 16 13 N -0.60 -12.97 2.25 -169.94 -0.38 -13.35 16 14 C -0.25 -6.01 10.07 -15.06 -0.15 -6.16 16 15 H 0.08 1.94 7.84 -52.49 -0.41 1.53 16 16 C 0.00 0.10 5.48 -17.43 -0.10 0.01 16 17 N -0.91 -24.80 10.36 55.49 0.57 -24.22 16 18 Si 0.91 20.43 29.56 -169.99 -5.02 15.40 16 19 H -0.29 -6.41 7.11 56.52 0.40 -6.00 16 20 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 22 C 0.13 2.16 6.20 -2.41 -0.01 2.15 16 23 C 0.11 1.73 4.08 -65.67 -0.27 1.46 16 24 H 0.12 1.52 8.14 -51.93 -0.42 1.10 16 25 N -0.28 -4.45 2.44 -52.57 -0.13 -4.58 16 26 C 0.00 -0.06 10.02 -17.05 -0.17 -0.23 16 27 C -0.08 -1.18 12.05 -17.74 -0.21 -1.39 16 28 N -0.28 -4.74 12.41 30.23 0.38 -4.36 16 29 N -0.11 -1.87 12.25 60.35 0.74 -1.13 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.59 6.47 -51.93 -0.34 0.26 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.07 0.77 7.93 -51.93 -0.41 0.36 16 36 H 0.03 0.31 8.12 -51.93 -0.42 -0.11 16 37 H 0.09 1.34 5.88 -51.93 -0.31 1.04 16 38 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 39 H 0.07 0.78 6.30 -51.93 -0.33 0.46 16 40 H 0.06 0.71 8.12 -51.93 -0.42 0.29 16 41 H 0.10 1.29 7.93 -51.93 -0.41 0.87 16 42 H 0.40 6.35 6.77 -40.82 -0.28 6.07 16 43 H 0.06 1.48 7.18 -51.93 -0.37 1.10 16 44 H 0.06 1.51 7.61 -51.92 -0.40 1.11 16 45 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 46 H 0.06 0.97 7.86 -51.93 -0.41 0.56 16 47 H 0.05 0.83 8.14 -51.92 -0.42 0.40 16 48 H 0.20 3.73 6.83 -52.48 -0.36 3.37 16 49 H 0.18 2.28 8.06 -52.49 -0.42 1.86 16 LS Contribution 388.53 15.07 5.86 5.86 Total: -1.00 -29.32 388.53 -7.56 -36.88 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: -7.77 Total: 10.45 kcal Atomic # 6 Polarization: 10.09 SS G_CDS: -0.51 Total: 9.58 kcal Atomic # 7 Polarization: -67.67 SS G_CDS: -0.18 Total: -67.85 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.08 Total: -10.31 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -29.32 -7.56 -36.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129403753.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.770 kcal (2) G-P(sol) polarization free energy of solvation -29.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds