Wall clock time and date at job start Tue Mar 31 2020 20:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47154 * 2 1 4 4 N 1.46901 * 109.47514 * 180.02562 * 3 2 1 5 5 C 1.46900 * 110.99955 * 66.04503 * 4 3 2 6 6 C 1.46896 * 111.00033 * 189.99864 * 4 3 2 7 7 C 1.50703 * 109.47080 * 169.99607 * 6 4 3 8 8 O 1.21284 * 119.99755 * 0.02562 * 7 6 4 9 9 N 1.34776 * 120.00106 * 179.97438 * 7 6 4 10 10 C 1.46499 * 119.99893 * 180.02562 * 9 7 6 11 11 H 1.08998 * 110.64355 * 34.30279 * 10 9 7 12 12 C 1.54319 * 110.72186 * 271.15706 * 10 9 7 13 13 N 1.47018 * 107.27428 * 219.44626 * 12 10 9 14 14 C 1.36936 * 125.64997 * 178.91125 * 13 12 10 15 15 H 1.07996 * 120.00183 * 174.90709 * 14 13 12 16 16 C 1.38820 * 119.99965 * 354.89906 * 14 13 12 17 17 N 1.31620 * 119.99765 * 7.06928 * 16 14 13 18 18 Si 1.86794 * 120.00030 * 187.06768 * 16 14 13 19 19 H 1.48504 * 109.47075 * 94.98874 * 18 16 14 20 20 H 1.48501 * 109.47253 * 214.98677 * 18 16 14 21 21 H 1.48499 * 109.47241 * 334.99321 * 18 16 14 22 22 C 1.47425 * 108.70114 * 358.94157 * 13 12 10 23 23 C 1.55120 * 104.94490 * 24.00182 * 22 13 12 24 24 H 1.08993 * 111.16535 * 205.13019 * 23 22 13 25 25 N 1.46500 * 110.93203 * 81.21384 * 23 22 13 26 26 C 1.35310 * 125.87073 * 332.95871 * 25 23 22 27 27 C 1.35353 * 106.17649 * 180.02562 * 26 25 23 28 28 N 1.33769 * 106.49607 * 359.97438 * 27 26 25 29 29 N 1.28636 * 108.88623 * 359.73973 * 28 27 26 30 30 H 1.08992 * 109.47164 * 300.00317 * 1 2 3 31 31 H 1.09002 * 109.46708 * 59.99960 * 1 2 3 32 32 H 1.08996 * 109.46684 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47640 * 240.00160 * 2 1 3 34 34 H 1.08998 * 109.47364 * 119.99408 * 2 1 3 35 35 H 1.09004 * 109.47372 * 59.99339 * 3 2 1 36 36 H 1.09007 * 109.47098 * 300.00084 * 3 2 1 37 37 H 1.09003 * 109.47317 * 183.95826 * 5 4 3 38 38 H 1.08996 * 109.47260 * 63.95117 * 5 4 3 39 39 H 1.09006 * 109.47006 * 303.95232 * 5 4 3 40 40 H 1.09001 * 109.47384 * 289.99775 * 6 4 3 41 41 H 1.08998 * 109.47303 * 49.99816 * 6 4 3 42 42 H 0.97003 * 119.99715 * 0.02562 * 9 7 6 43 43 H 1.09000 * 109.88346 * 338.86697 * 12 10 9 44 44 H 1.09007 * 109.88048 * 100.02368 * 12 10 9 45 45 H 0.97000 * 119.99565 * 179.97438 * 17 16 14 46 46 H 1.09001 * 110.36455 * 142.96957 * 22 13 12 47 47 H 1.09008 * 110.36622 * 265.17965 * 22 13 12 48 48 H 1.08004 * 126.91099 * 0.02562 * 26 25 23 49 49 H 1.08000 * 126.75272 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4426 -0.0006 5 6 4.0350 0.8860 -1.2542 6 6 4.0355 2.7932 0.2375 7 6 5.5219 2.7184 0.4743 8 8 6.0871 1.6456 0.4469 9 7 6.2234 3.8437 0.7155 10 6 7.6684 3.7710 0.9451 11 1 8.1137 2.9785 0.3437 12 6 7.9732 3.5568 2.4426 13 7 9.1469 4.3789 2.7712 14 6 9.7253 4.4862 4.0078 15 1 10.6362 5.0532 4.1305 16 6 9.1407 3.8662 5.1036 17 7 8.1121 3.0627 4.9339 18 14 9.8138 4.1723 6.8190 19 1 9.0387 5.2601 7.4680 20 1 9.6958 2.9311 7.6258 21 1 11.2418 4.5690 6.7269 22 6 9.5976 5.0693 1.5490 23 6 8.3419 5.1352 0.6407 24 1 8.6201 5.2077 -0.4106 25 7 7.4725 6.2484 1.0297 26 6 7.3832 6.7900 2.2664 27 6 6.4680 7.7832 2.1780 28 7 6.0480 7.8008 0.9080 29 7 6.6665 6.8831 0.2522 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5137 0.8900 35 1 1.6766 1.9564 0.8899 36 1 1.6767 1.9564 -0.8900 37 1 5.1224 0.8327 -1.2002 38 1 3.7435 1.5264 -2.0866 39 1 3.6293 -0.1143 -1.4060 40 1 3.8372 3.4191 -0.6326 41 1 3.5494 3.2236 1.1130 42 1 5.7713 4.7017 0.7370 43 1 7.1200 3.8718 3.0434 44 1 8.1928 2.5055 2.6295 45 1 7.7039 2.6292 5.6996 46 1 9.9475 6.0736 1.7878 47 1 10.3880 4.4990 1.0608 48 1 7.9320 6.4901 3.1470 49 1 6.1415 8.4341 2.9756 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001129403753.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:27 Heat of formation + Delta-G solvation = 92.000689 kcal Electronic energy + Delta-G solvation = -30522.316381 eV Core-core repulsion = 26522.552031 eV Total energy + Delta-G solvation = -3999.764350 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -44.24859 -41.14958 -39.57363 -38.18635 -35.77330 -34.81509 -34.10972 -33.43867 -31.84682 -30.86768 -29.62967 -28.61541 -27.89395 -26.57930 -24.49337 -23.90723 -23.48436 -22.32243 -21.69244 -21.46364 -21.31385 -19.24412 -18.57010 -18.37065 -17.42018 -16.92547 -16.85325 -16.45328 -16.41099 -15.91087 -15.71035 -15.66641 -15.51268 -14.99352 -14.92662 -14.77613 -14.21916 -13.99521 -13.88698 -13.70143 -13.41309 -13.17842 -12.95951 -12.86260 -12.80264 -12.73051 -12.65306 -12.53110 -12.41139 -12.21584 -12.04735 -11.97298 -11.87999 -11.81134 -11.47300 -11.10893 -10.87727 -10.72164 -10.25002 -10.14501 -9.31547 -8.99239 -7.86923 -5.25224 0.66862 1.33976 1.49673 1.50724 1.57402 1.59095 1.65644 1.94634 2.47929 2.94698 3.16402 3.33879 3.40807 3.53630 3.69747 3.76815 3.93233 3.94238 4.09507 4.20663 4.21262 4.25378 4.30767 4.44414 4.46091 4.47680 4.50518 4.54068 4.66921 4.69523 4.80827 4.81236 4.85390 4.87490 5.04952 5.16825 5.22901 5.29328 5.31139 5.41334 5.42605 5.53829 5.69833 5.74594 5.88426 6.08838 6.10207 6.40419 7.01855 7.18122 7.55385 7.69661 8.29750 9.21828 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.010409 B = 0.003582 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2689.426027 B = 7815.558207 C = 9176.673378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.120 4.120 3 C 0.056 3.944 4 N -0.548 5.548 5 C 0.022 3.978 6 C 0.044 3.956 7 C 0.513 3.487 8 O -0.555 6.555 9 N -0.713 5.713 10 C 0.124 3.876 11 H 0.111 0.889 12 C 0.189 3.811 13 N -0.614 5.614 14 C -0.238 4.238 15 H 0.094 0.906 16 C -0.054 4.054 17 N -0.944 5.944 18 Si 0.971 3.029 19 H -0.285 1.285 20 H -0.306 1.306 21 H -0.266 1.266 22 C 0.127 3.873 23 C 0.128 3.872 24 H 0.157 0.843 25 N -0.273 5.273 26 C -0.018 4.018 27 C -0.064 4.064 28 N -0.292 5.292 29 N -0.111 5.111 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.055 0.945 35 H 0.077 0.923 36 H 0.048 0.952 37 H 0.061 0.939 38 H 0.034 0.966 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.110 0.890 42 H 0.400 0.600 43 H 0.023 0.977 44 H 0.003 0.997 45 H 0.244 0.756 46 H 0.072 0.928 47 H 0.076 0.924 48 H 0.186 0.814 49 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.163 2.700 -11.716 15.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.158 4.158 3 C -0.071 4.071 4 N -0.272 5.272 5 C -0.126 4.126 6 C -0.087 4.087 7 C 0.300 3.700 8 O -0.432 6.432 9 N -0.365 5.365 10 C 0.016 3.984 11 H 0.129 0.871 12 C 0.063 3.937 13 N -0.342 5.342 14 C -0.366 4.366 15 H 0.112 0.888 16 C -0.248 4.248 17 N -0.592 5.592 18 Si 0.800 3.200 19 H -0.212 1.212 20 H -0.233 1.233 21 H -0.190 1.190 22 C 0.001 3.999 23 C 0.024 3.976 24 H 0.175 0.825 25 N -0.067 5.067 26 C -0.169 4.169 27 C -0.221 4.221 28 N -0.158 5.158 29 N -0.090 5.090 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.095 0.905 36 H 0.066 0.934 37 H 0.080 0.920 38 H 0.053 0.947 39 H 0.097 0.903 40 H 0.103 0.897 41 H 0.128 0.872 42 H 0.236 0.764 43 H 0.042 0.958 44 H 0.021 0.979 45 H 0.054 0.946 46 H 0.090 0.910 47 H 0.093 0.907 48 H 0.203 0.797 49 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -9.179 1.661 -12.613 15.688 hybrid contribution 0.489 0.337 1.942 2.031 sum -8.689 1.999 -10.671 13.906 Atomic orbital electron populations 1.21698 0.94042 1.02356 1.02242 1.21519 0.96524 0.95541 1.02168 1.22273 0.84925 0.98353 1.01562 1.61585 1.08805 1.19986 1.36847 1.22512 1.01316 1.00246 0.88498 1.21932 0.90590 0.92162 1.03982 1.21063 0.90375 0.83246 0.75313 1.90663 1.72148 1.29184 1.51202 1.45804 1.08048 1.10008 1.72686 1.22494 0.81240 0.96309 0.98319 0.87095 1.21138 0.89812 0.93507 0.89249 1.44611 1.32713 1.51720 1.05136 1.19368 1.06191 1.27868 0.83202 0.88804 1.25578 0.98515 0.99291 1.01426 1.70201 1.26334 1.33278 1.29351 0.85174 0.78305 0.76327 0.80180 1.21204 1.23334 1.19030 1.22172 0.92588 0.98551 0.86608 1.23403 0.89972 0.81314 1.02892 0.82520 1.47310 1.28311 1.23764 1.07308 1.24055 1.03825 0.97743 0.91318 1.23980 0.99827 1.02042 0.96232 1.75012 1.20857 1.14553 1.05378 1.78189 1.05114 1.05781 1.19890 0.92479 0.91995 0.91923 0.91764 0.92665 0.90455 0.93423 0.92009 0.94738 0.90314 0.89670 0.87153 0.76379 0.95841 0.97888 0.94631 0.91000 0.90673 0.79674 0.77113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.91 71.98 0.71 -1.30 16 2 C -0.12 -2.18 5.87 30.60 0.18 -2.00 16 3 C 0.06 1.10 4.96 86.30 0.43 1.53 16 4 N -0.55 -14.36 4.50 -927.02 -4.17 -18.53 16 5 C 0.02 0.54 9.01 127.69 1.15 1.69 16 6 C 0.04 1.15 5.45 85.56 0.47 1.61 16 7 C 0.51 17.36 7.55 87.66 0.66 18.02 16 8 O -0.55 -23.01 13.99 -3.04 -0.04 -23.05 16 9 N -0.71 -23.18 5.07 -436.92 -2.22 -25.39 16 10 C 0.12 4.29 3.14 46.18 0.14 4.44 16 11 H 0.11 3.87 7.62 -2.39 -0.02 3.86 16 12 C 0.19 8.63 4.77 86.73 0.41 9.05 16 13 N -0.61 -26.60 2.25 -691.56 -1.55 -28.16 16 14 C -0.24 -11.58 10.07 84.04 0.85 -10.73 16 15 H 0.09 4.28 7.84 -2.91 -0.02 4.26 16 16 C -0.05 -2.81 5.48 84.86 0.46 -2.35 16 17 N -0.94 -54.10 10.36 21.65 0.22 -53.88 16 18 Si 0.97 42.75 29.56 68.60 2.03 44.78 16 19 H -0.29 -12.35 7.11 99.48 0.71 -11.65 16 20 H -0.31 -14.16 7.11 99.48 0.71 -13.45 16 21 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 22 C 0.13 4.03 6.20 86.93 0.54 4.57 16 23 C 0.13 3.63 4.08 46.46 0.19 3.82 16 24 H 0.16 3.40 8.14 -2.39 -0.02 3.38 16 25 N -0.27 -8.28 2.44 -320.24 -0.78 -9.06 16 26 C -0.02 -0.57 10.02 83.49 0.84 0.27 16 27 C -0.06 -1.86 12.05 83.73 1.01 -0.85 16 28 N -0.29 -9.24 12.41 -58.26 -0.72 -9.96 16 29 N -0.11 -3.45 12.25 37.02 0.45 -3.00 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.06 1.14 6.47 -2.39 -0.02 1.12 16 34 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.08 1.48 7.93 -2.39 -0.02 1.46 16 36 H 0.05 0.81 8.12 -2.38 -0.02 0.79 16 37 H 0.06 1.88 5.88 -2.39 -0.01 1.86 16 38 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.08 1.73 6.30 -2.38 -0.02 1.72 16 40 H 0.09 1.80 8.12 -2.39 -0.02 1.78 16 41 H 0.11 2.67 7.93 -2.39 -0.02 2.65 16 42 H 0.40 12.39 6.77 -92.71 -0.63 11.76 16 43 H 0.02 1.23 7.18 -2.39 -0.02 1.21 16 44 H 0.00 0.16 7.61 -2.38 -0.02 0.14 16 45 H 0.24 14.02 8.31 -92.71 -0.77 13.25 16 46 H 0.07 2.15 7.86 -2.39 -0.02 2.14 16 47 H 0.08 2.14 8.14 -2.38 -0.02 2.13 16 48 H 0.19 6.76 6.83 -2.91 -0.02 6.74 16 49 H 0.21 4.68 8.06 -2.91 -0.02 4.66 16 Total: -1.00 -66.40 388.53 1.59 -64.81 By element: Atomic # 1 Polarization: 33.35 SS G_CDS: 0.33 Total: 33.68 kcal Atomic # 6 Polarization: 19.72 SS G_CDS: 8.04 Total: 27.76 kcal Atomic # 7 Polarization: -139.21 SS G_CDS: -8.77 Total: -147.97 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: -0.04 Total: -23.05 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -66.40 1.59 -64.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129403753.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.808 kcal (2) G-P(sol) polarization free energy of solvation -66.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds