Wall clock time and date at job start Tue Mar 31 2020 20:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46831 * 2 1 4 4 N 1.46901 * 109.47233 * 119.99519 * 2 1 3 5 5 C 1.46901 * 110.99873 * 56.04806 * 4 2 1 6 6 C 1.46904 * 110.99831 * 180.02562 * 4 2 1 7 7 C 1.50699 * 109.46815 * 170.00013 * 6 4 2 8 8 O 1.21277 * 120.00429 * 0.02562 * 7 6 4 9 9 N 1.34777 * 119.99930 * 179.97438 * 7 6 4 10 10 C 1.46495 * 120.00228 * 179.97438 * 9 7 6 11 11 H 1.09006 * 110.91720 * 31.10347 * 10 9 7 12 12 C 1.54904 * 111.00650 * 267.19953 * 10 9 7 13 13 N 1.47424 * 104.83062 * 204.91530 * 12 10 9 14 14 C 1.36943 * 125.64864 * 204.09326 * 13 12 10 15 15 H 1.07999 * 120.00050 * 169.99151 * 14 13 12 16 16 C 1.38817 * 119.99817 * 349.98185 * 14 13 12 17 17 N 1.31622 * 120.00020 * 350.42725 * 16 14 13 18 18 Si 1.86792 * 119.99884 * 170.41872 * 16 14 13 19 19 H 1.48500 * 109.46995 * 94.14789 * 18 16 14 20 20 H 1.48500 * 109.47217 * 214.14310 * 18 16 14 21 21 H 1.48499 * 109.47546 * 334.14469 * 18 16 14 22 22 C 1.47019 * 108.70647 * 24.12628 * 13 12 10 23 23 C 1.54321 * 107.27031 * 358.94179 * 22 13 12 24 24 H 1.08994 * 110.72307 * 219.26411 * 23 22 13 25 25 N 1.46504 * 110.72009 * 96.16743 * 23 22 13 26 26 C 1.35308 * 125.87050 * 326.45704 * 25 23 22 27 27 C 1.35346 * 106.17733 * 180.20392 * 26 25 23 28 28 N 1.33775 * 106.49466 * 359.64351 * 27 26 25 29 29 N 1.28629 * 108.88413 * 0.36484 * 28 27 26 30 30 H 1.09000 * 109.47286 * 299.99903 * 1 2 3 31 31 H 1.08993 * 109.47410 * 60.00393 * 1 2 3 32 32 H 1.08999 * 109.46946 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47286 * 240.00097 * 2 1 3 34 34 H 1.09009 * 109.46984 * 299.99570 * 3 2 1 35 35 H 1.09000 * 109.47789 * 59.99675 * 3 2 1 36 36 H 1.09001 * 109.46844 * 180.02562 * 3 2 1 37 37 H 1.09003 * 109.47117 * 183.95059 * 5 4 2 38 38 H 1.09004 * 109.47004 * 303.95163 * 5 4 2 39 39 H 1.09002 * 109.47109 * 63.95279 * 5 4 2 40 40 H 1.09002 * 109.47262 * 50.00386 * 6 4 2 41 41 H 1.08994 * 109.46777 * 289.99920 * 6 4 2 42 42 H 0.97002 * 120.00121 * 359.97438 * 9 7 6 43 43 H 1.08997 * 110.36638 * 86.08082 * 12 10 9 44 44 H 1.09004 * 110.45802 * 323.79850 * 12 10 9 45 45 H 0.96997 * 119.99575 * 179.97438 * 17 16 14 46 46 H 1.09000 * 109.88660 * 239.52289 * 22 13 12 47 47 H 1.09008 * 109.88411 * 118.35745 * 22 13 12 48 48 H 1.08001 * 126.91124 * 359.93578 * 26 25 23 49 49 H 1.07997 * 126.75702 * 179.76959 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 1.4730 -2.0534 1.2817 6 6 3.4882 -0.7114 1.2337 7 6 3.9529 -1.2037 2.5800 8 8 3.1409 -1.5092 3.4275 9 7 5.2710 -1.3056 2.8421 10 6 5.7229 -1.7836 4.1511 11 1 5.0111 -2.4932 4.5732 12 6 5.9682 -0.6002 5.1200 13 7 6.9466 -1.1098 6.0980 14 6 7.1245 -0.6356 7.3703 15 1 7.7509 -1.1753 8.0651 16 6 6.4997 0.5388 7.7669 17 7 5.8933 1.2949 6.8764 18 14 6.5194 1.0461 9.5645 19 1 7.6591 1.9668 9.8066 20 1 5.2470 1.7351 9.8984 21 1 6.6677 -0.1602 10.4178 22 6 7.7004 -2.2109 5.4808 23 6 7.1403 -2.4077 4.0564 24 1 7.0822 -3.4674 3.8078 25 7 7.9576 -1.6909 3.0743 26 6 8.5995 -0.5180 3.2820 27 6 9.2237 -0.2187 2.1189 28 7 8.9433 -1.2141 1.2703 29 7 8.1889 -2.0689 1.8659 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.6766 1.9563 -0.8901 35 1 1.6766 1.9565 0.8899 36 1 3.1299 1.4425 -0.0005 37 1 1.7950 -2.5186 2.2135 38 1 0.3842 -2.0099 1.2546 39 1 1.8343 -2.6417 0.4382 40 1 3.8687 0.2958 1.0640 41 1 3.8611 -1.3767 0.4550 42 1 5.9206 -1.0624 2.1640 43 1 5.0411 -0.3217 5.6210 44 1 6.3793 0.2539 4.5819 45 1 5.4565 2.1153 7.1536 46 1 7.5659 -3.1235 6.0614 47 1 8.7585 -1.9535 5.4307 48 1 8.6082 0.0646 4.1913 49 1 9.8306 0.6513 1.9164 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001129461535.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:32 Heat of formation + Delta-G solvation = 117.507404 kcal Electronic energy + Delta-G solvation = -30750.527844 eV Core-core repulsion = 26751.869548 eV Total energy + Delta-G solvation = -3998.658296 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.07013 -39.89285 -38.38946 -37.29282 -34.20342 -33.48232 -32.20613 -31.76696 -30.68403 -29.57289 -28.63266 -27.71716 -26.28747 -24.97899 -24.43361 -22.61604 -22.35883 -20.99096 -20.22893 -20.10678 -19.88810 -17.74887 -17.28758 -16.91502 -16.42421 -15.75878 -15.52617 -15.08598 -14.91908 -14.65424 -14.61223 -14.34130 -14.13570 -13.72682 -13.49512 -13.12195 -12.89405 -12.79082 -12.57978 -12.43723 -12.36048 -12.17443 -11.94682 -11.82090 -11.51098 -11.41377 -11.26241 -11.16309 -11.07890 -10.81027 -10.76612 -10.70875 -10.60382 -10.23993 -10.02341 -9.83447 -9.53721 -9.08558 -8.80442 -8.69429 -8.33165 -7.10754 -5.93980 -3.31356 1.87543 2.53410 2.81967 2.87709 3.15169 3.30755 3.37572 3.39479 3.92391 4.31075 4.55585 4.65777 4.74333 4.79536 4.85687 4.90469 5.05751 5.15137 5.18194 5.22622 5.30617 5.39874 5.45923 5.48753 5.50200 5.54793 5.57974 5.66668 5.68408 5.72636 5.78775 5.80060 5.99440 6.05298 6.11736 6.14061 6.17398 6.19590 6.41632 6.58315 6.86006 6.92941 7.02842 7.14166 7.33513 7.58954 7.69619 7.99263 8.48006 8.75330 8.94653 9.56507 10.16722 11.17954 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.009386 B = 0.004029 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2982.332369 B = 6947.679641 C = 8794.568571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.076 3.924 3 C -0.150 4.150 4 N -0.517 5.517 5 C 0.015 3.985 6 C 0.033 3.967 7 C 0.518 3.482 8 O -0.516 6.516 9 N -0.719 5.719 10 C 0.111 3.889 11 H 0.116 0.884 12 C 0.165 3.835 13 N -0.597 5.597 14 C -0.243 4.243 15 H 0.081 0.919 16 C 0.003 3.997 17 N -0.910 5.910 18 Si 0.914 3.086 19 H -0.287 1.287 20 H -0.288 1.288 21 H -0.279 1.279 22 C 0.129 3.871 23 C 0.118 3.882 24 H 0.120 0.880 25 N -0.277 5.277 26 C -0.015 4.015 27 C -0.069 4.069 28 N -0.278 5.278 29 N -0.103 5.103 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.038 0.962 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.056 0.944 37 H 0.089 0.911 38 H 0.071 0.929 39 H 0.017 0.983 40 H 0.106 0.894 41 H 0.060 0.940 42 H 0.394 0.606 43 H 0.084 0.916 44 H 0.036 0.964 45 H 0.257 0.743 46 H 0.055 0.945 47 H 0.042 0.958 48 H 0.196 0.804 49 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.383 -3.353 -13.172 14.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.032 4.032 3 C -0.208 4.208 4 N -0.242 5.242 5 C -0.133 4.133 6 C -0.098 4.098 7 C 0.304 3.696 8 O -0.391 6.391 9 N -0.372 5.372 10 C 0.004 3.996 11 H 0.134 0.866 12 C 0.039 3.961 13 N -0.325 5.325 14 C -0.371 4.371 15 H 0.098 0.902 16 C -0.195 4.195 17 N -0.556 5.556 18 Si 0.743 3.257 19 H -0.214 1.214 20 H -0.214 1.214 21 H -0.204 1.204 22 C 0.002 3.998 23 C 0.015 3.985 24 H 0.138 0.862 25 N -0.071 5.071 26 C -0.167 4.167 27 C -0.226 4.226 28 N -0.144 5.144 29 N -0.083 5.083 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.056 0.944 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.108 0.892 38 H 0.090 0.910 39 H 0.036 0.964 40 H 0.124 0.876 41 H 0.078 0.922 42 H 0.229 0.771 43 H 0.103 0.897 44 H 0.054 0.946 45 H 0.067 0.933 46 H 0.073 0.927 47 H 0.059 0.941 48 H 0.213 0.787 49 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -4.504 -4.236 -13.080 14.468 hybrid contribution 0.915 0.891 0.798 1.506 sum -3.589 -3.345 -12.282 13.225 Atomic orbital electron populations 1.21903 0.94061 1.02101 1.02311 1.21659 0.95961 0.95128 0.90469 1.21941 1.01071 0.95266 1.02484 1.61689 1.05521 1.18269 1.38752 1.22633 1.00614 0.88101 1.01907 1.22030 0.90020 1.03007 0.94760 1.20363 0.82002 0.77831 0.89443 1.90681 1.52751 1.47937 1.47683 1.45770 1.07254 1.68280 1.15874 1.22966 0.91992 1.00024 0.84636 0.86636 1.21859 0.95544 0.90376 0.88322 1.44364 1.38577 1.37298 1.12231 1.18947 1.27901 1.04466 0.85744 0.90165 1.24850 1.00305 0.96086 0.98229 1.69918 1.39537 1.14206 1.31891 0.86098 0.77236 0.78332 0.83995 1.21439 1.21444 1.20428 1.21675 0.96001 0.94583 0.87580 1.23194 0.90552 0.96637 0.88120 0.86194 1.47443 1.32852 1.16319 1.10465 1.23970 0.99076 0.90405 1.03209 1.23544 1.06468 1.01611 0.90964 1.75036 1.11203 1.01642 1.26538 1.78249 1.16322 1.22081 0.91608 0.91480 0.92242 0.92413 0.94375 0.92135 0.91330 0.92528 0.89238 0.91023 0.96442 0.87567 0.92213 0.77128 0.89737 0.94580 0.93278 0.92708 0.94071 0.78695 0.79704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 8.84 37.16 0.33 -1.01 16 2 C 0.08 0.79 2.68 -67.71 -0.18 0.61 16 3 C -0.15 -1.47 8.99 37.16 0.33 -1.14 16 4 N -0.52 -6.80 4.37 -236.32 -1.03 -7.83 16 5 C 0.02 0.19 8.84 60.07 0.53 0.72 16 6 C 0.03 0.43 5.26 -4.97 -0.03 0.41 16 7 C 0.52 8.55 7.56 -10.99 -0.08 8.47 16 8 O -0.52 -10.28 13.95 5.56 0.08 -10.20 16 9 N -0.72 -11.48 5.16 -51.73 -0.27 -11.75 16 10 C 0.11 1.94 3.29 -65.79 -0.22 1.72 16 11 H 0.12 2.11 7.54 -51.93 -0.39 1.72 16 12 C 0.17 3.59 4.60 -2.53 -0.01 3.58 16 13 N -0.60 -13.21 3.39 -170.07 -0.58 -13.79 16 14 C -0.24 -6.10 10.24 -15.05 -0.15 -6.25 16 15 H 0.08 1.95 7.85 -52.49 -0.41 1.54 16 16 C 0.00 0.09 5.40 -17.43 -0.09 0.00 16 17 N -0.91 -24.96 10.68 55.49 0.59 -24.37 16 18 Si 0.91 20.83 29.56 -169.99 -5.03 15.81 16 19 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 22 C 0.13 2.24 6.32 -3.07 -0.02 2.23 16 23 C 0.12 1.81 3.97 -66.09 -0.26 1.55 16 24 H 0.12 1.58 8.14 -51.93 -0.42 1.16 16 25 N -0.28 -4.31 2.23 -52.98 -0.12 -4.43 16 26 C -0.02 -0.24 9.23 -17.05 -0.16 -0.39 16 27 C -0.07 -1.00 12.05 -17.74 -0.21 -1.21 16 28 N -0.28 -4.51 12.41 30.23 0.38 -4.14 16 29 N -0.10 -1.68 12.58 60.35 0.76 -0.92 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.51 6.26 -51.93 -0.32 0.18 16 33 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.55 6.20 -51.93 -0.32 0.23 16 37 H 0.09 1.34 5.88 -51.93 -0.31 1.03 16 38 H 0.07 0.80 6.01 -51.93 -0.31 0.49 16 39 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 40 H 0.11 1.30 5.83 -51.93 -0.30 1.00 16 41 H 0.06 0.69 8.12 -51.93 -0.42 0.27 16 42 H 0.39 6.03 7.03 -40.82 -0.29 5.74 16 43 H 0.08 2.22 6.94 -51.93 -0.36 1.86 16 44 H 0.04 0.85 7.09 -51.93 -0.37 0.48 16 45 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 46 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 47 H 0.04 0.72 7.42 -51.92 -0.39 0.34 16 48 H 0.20 3.31 7.58 -52.49 -0.40 2.91 16 49 H 0.19 2.07 8.06 -52.49 -0.42 1.65 16 LS Contribution 384.15 15.07 5.79 5.79 Total: -1.00 -29.62 384.15 -7.18 -36.80 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -7.53 Total: 9.78 kcal Atomic # 6 Polarization: 9.49 SS G_CDS: -0.23 Total: 9.27 kcal Atomic # 7 Polarization: -66.97 SS G_CDS: -0.27 Total: -67.24 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.08 Total: -10.20 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.03 Total: 15.81 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -29.62 -7.18 -36.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129461535.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.311 kcal (2) G-P(sol) polarization free energy of solvation -29.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds