Wall clock time and date at job start Tue Mar 31 2020 20:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46831 * 2 1 4 4 N 1.46901 * 109.47233 * 119.99519 * 2 1 3 5 5 C 1.46901 * 110.99873 * 56.04806 * 4 2 1 6 6 C 1.46904 * 110.99831 * 180.02562 * 4 2 1 7 7 C 1.50699 * 109.46815 * 170.00013 * 6 4 2 8 8 O 1.21277 * 120.00429 * 0.02562 * 7 6 4 9 9 N 1.34777 * 119.99930 * 179.97438 * 7 6 4 10 10 C 1.46495 * 120.00228 * 179.97438 * 9 7 6 11 11 H 1.09006 * 110.91720 * 31.10347 * 10 9 7 12 12 C 1.54904 * 111.00650 * 267.19953 * 10 9 7 13 13 N 1.47424 * 104.83062 * 204.91530 * 12 10 9 14 14 C 1.36943 * 125.64864 * 204.09326 * 13 12 10 15 15 H 1.07999 * 120.00050 * 169.99151 * 14 13 12 16 16 C 1.38817 * 119.99817 * 349.98185 * 14 13 12 17 17 N 1.31622 * 120.00020 * 350.42725 * 16 14 13 18 18 Si 1.86792 * 119.99884 * 170.41872 * 16 14 13 19 19 H 1.48500 * 109.46995 * 94.14789 * 18 16 14 20 20 H 1.48500 * 109.47217 * 214.14310 * 18 16 14 21 21 H 1.48499 * 109.47546 * 334.14469 * 18 16 14 22 22 C 1.47019 * 108.70647 * 24.12628 * 13 12 10 23 23 C 1.54321 * 107.27031 * 358.94179 * 22 13 12 24 24 H 1.08994 * 110.72307 * 219.26411 * 23 22 13 25 25 N 1.46504 * 110.72009 * 96.16743 * 23 22 13 26 26 C 1.35308 * 125.87050 * 326.45704 * 25 23 22 27 27 C 1.35346 * 106.17733 * 180.20392 * 26 25 23 28 28 N 1.33775 * 106.49466 * 359.64351 * 27 26 25 29 29 N 1.28629 * 108.88413 * 0.36484 * 28 27 26 30 30 H 1.09000 * 109.47286 * 299.99903 * 1 2 3 31 31 H 1.08993 * 109.47410 * 60.00393 * 1 2 3 32 32 H 1.08999 * 109.46946 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47286 * 240.00097 * 2 1 3 34 34 H 1.09009 * 109.46984 * 299.99570 * 3 2 1 35 35 H 1.09000 * 109.47789 * 59.99675 * 3 2 1 36 36 H 1.09001 * 109.46844 * 180.02562 * 3 2 1 37 37 H 1.09003 * 109.47117 * 183.95059 * 5 4 2 38 38 H 1.09004 * 109.47004 * 303.95163 * 5 4 2 39 39 H 1.09002 * 109.47109 * 63.95279 * 5 4 2 40 40 H 1.09002 * 109.47262 * 50.00386 * 6 4 2 41 41 H 1.08994 * 109.46777 * 289.99920 * 6 4 2 42 42 H 0.97002 * 120.00121 * 359.97438 * 9 7 6 43 43 H 1.08997 * 110.36638 * 86.08082 * 12 10 9 44 44 H 1.09004 * 110.45802 * 323.79850 * 12 10 9 45 45 H 0.96997 * 119.99575 * 179.97438 * 17 16 14 46 46 H 1.09000 * 109.88660 * 239.52289 * 22 13 12 47 47 H 1.09008 * 109.88411 * 118.35745 * 22 13 12 48 48 H 1.08001 * 126.91124 * 359.93578 * 26 25 23 49 49 H 1.07997 * 126.75702 * 179.76959 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 1.4730 -2.0534 1.2817 6 6 3.4882 -0.7114 1.2337 7 6 3.9529 -1.2037 2.5800 8 8 3.1409 -1.5092 3.4275 9 7 5.2710 -1.3056 2.8421 10 6 5.7229 -1.7836 4.1511 11 1 5.0111 -2.4932 4.5732 12 6 5.9682 -0.6002 5.1200 13 7 6.9466 -1.1098 6.0980 14 6 7.1245 -0.6356 7.3703 15 1 7.7509 -1.1753 8.0651 16 6 6.4997 0.5388 7.7669 17 7 5.8933 1.2949 6.8764 18 14 6.5194 1.0461 9.5645 19 1 7.6591 1.9668 9.8066 20 1 5.2470 1.7351 9.8984 21 1 6.6677 -0.1602 10.4178 22 6 7.7004 -2.2109 5.4808 23 6 7.1403 -2.4077 4.0564 24 1 7.0822 -3.4674 3.8078 25 7 7.9576 -1.6909 3.0743 26 6 8.5995 -0.5180 3.2820 27 6 9.2237 -0.2187 2.1189 28 7 8.9433 -1.2141 1.2703 29 7 8.1889 -2.0689 1.8659 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.6766 1.9563 -0.8901 35 1 1.6766 1.9565 0.8899 36 1 3.1299 1.4425 -0.0005 37 1 1.7950 -2.5186 2.2135 38 1 0.3842 -2.0099 1.2546 39 1 1.8343 -2.6417 0.4382 40 1 3.8687 0.2958 1.0640 41 1 3.8611 -1.3767 0.4550 42 1 5.9206 -1.0624 2.1640 43 1 5.0411 -0.3217 5.6210 44 1 6.3793 0.2539 4.5819 45 1 5.4565 2.1153 7.1536 46 1 7.5659 -3.1235 6.0614 47 1 8.7585 -1.9535 5.4307 48 1 8.6082 0.0646 4.1913 49 1 9.8306 0.6513 1.9164 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001129461535.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:31 Heat of formation + Delta-G solvation = 96.485014 kcal Electronic energy + Delta-G solvation = -30751.439444 eV Core-core repulsion = 26751.869548 eV Total energy + Delta-G solvation = -3999.569895 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -44.31888 -41.19785 -39.69463 -38.48231 -35.81832 -34.86271 -33.49841 -33.07643 -31.92197 -30.89334 -29.94181 -29.11199 -27.36108 -26.54109 -25.51418 -24.00155 -23.61017 -22.47782 -21.53871 -21.49752 -20.87906 -19.25991 -18.60403 -18.46326 -17.55585 -16.98896 -16.89083 -16.52135 -16.06084 -15.95933 -15.80860 -15.72653 -15.54137 -14.87199 -14.78835 -14.60259 -14.40883 -13.99478 -13.91305 -13.49969 -13.47918 -13.18622 -13.09500 -12.94749 -12.83188 -12.74392 -12.72850 -12.46396 -12.40468 -12.26899 -12.10948 -11.98500 -11.93454 -11.83933 -11.58605 -11.16118 -10.89054 -10.72071 -10.30489 -10.15261 -9.28810 -8.97183 -7.91674 -5.28592 0.60587 1.26269 1.47405 1.50211 1.56302 1.58079 1.62256 1.90241 2.46788 2.92993 3.19434 3.29000 3.36757 3.50611 3.68721 3.71690 3.90049 3.91532 4.03112 4.14252 4.18460 4.23533 4.30004 4.32774 4.38768 4.40453 4.55229 4.56865 4.70897 4.77506 4.79348 4.79980 4.90073 4.91996 5.00105 5.07122 5.18911 5.27358 5.30034 5.33936 5.39182 5.48262 5.63936 5.66165 5.91112 6.10136 6.14008 6.39399 6.99107 7.17161 7.51175 7.66962 8.27934 9.18886 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.009386 B = 0.004029 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2982.332369 B = 6947.679641 C = 8794.568571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.074 3.926 3 C -0.149 4.149 4 N -0.541 5.541 5 C 0.020 3.980 6 C 0.041 3.959 7 C 0.513 3.487 8 O -0.555 6.555 9 N -0.711 5.711 10 C 0.124 3.876 11 H 0.109 0.891 12 C 0.183 3.817 13 N -0.613 5.613 14 C -0.242 4.242 15 H 0.089 0.911 16 C -0.053 4.053 17 N -0.942 5.942 18 Si 0.972 3.028 19 H -0.285 1.285 20 H -0.301 1.301 21 H -0.267 1.267 22 C 0.129 3.871 23 C 0.134 3.866 24 H 0.154 0.846 25 N -0.276 5.276 26 C -0.028 4.028 27 C -0.054 4.054 28 N -0.291 5.291 29 N -0.106 5.106 30 H 0.051 0.949 31 H 0.079 0.921 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.081 0.919 35 H 0.049 0.951 36 H 0.055 0.945 37 H 0.060 0.940 38 H 0.081 0.919 39 H 0.033 0.967 40 H 0.116 0.884 41 H 0.083 0.917 42 H 0.401 0.599 43 H 0.030 0.970 44 H 0.014 0.986 45 H 0.247 0.753 46 H 0.077 0.923 47 H 0.048 0.952 48 H 0.180 0.820 49 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.463 -4.376 -14.954 15.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.033 4.033 3 C -0.206 4.206 4 N -0.267 5.267 5 C -0.128 4.128 6 C -0.090 4.090 7 C 0.301 3.699 8 O -0.432 6.432 9 N -0.364 5.364 10 C 0.016 3.984 11 H 0.127 0.873 12 C 0.057 3.943 13 N -0.341 5.341 14 C -0.370 4.370 15 H 0.107 0.893 16 C -0.247 4.247 17 N -0.589 5.589 18 Si 0.800 3.200 19 H -0.212 1.212 20 H -0.229 1.229 21 H -0.192 1.192 22 C 0.002 3.998 23 C 0.031 3.969 24 H 0.172 0.828 25 N -0.070 5.070 26 C -0.179 4.179 27 C -0.211 4.211 28 N -0.157 5.157 29 N -0.085 5.085 30 H 0.070 0.930 31 H 0.098 0.902 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.100 0.900 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.100 0.900 39 H 0.051 0.949 40 H 0.134 0.866 41 H 0.101 0.899 42 H 0.236 0.764 43 H 0.049 0.951 44 H 0.032 0.968 45 H 0.056 0.944 46 H 0.095 0.905 47 H 0.065 0.935 48 H 0.198 0.802 49 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -3.547 -5.290 -14.891 16.196 hybrid contribution 0.655 1.201 1.327 1.906 sum -2.892 -4.089 -13.564 14.459 Atomic orbital electron populations 1.21892 0.93194 1.02437 1.02562 1.21771 0.96672 0.95087 0.89749 1.21945 1.01022 0.95029 1.02646 1.61669 1.05443 1.18823 1.40744 1.22531 1.01248 0.88008 1.00972 1.22001 0.90465 1.03736 0.92823 1.21091 0.81585 0.76824 0.90432 1.90670 1.53663 1.49604 1.49255 1.45703 1.07472 1.67988 1.15221 1.22569 0.93409 0.97940 0.84505 0.87324 1.21410 0.92893 0.91550 0.88472 1.44492 1.39551 1.38193 1.11830 1.19325 1.26596 1.03969 0.87160 0.89295 1.25565 1.00985 0.96730 1.01439 1.70115 1.41111 1.14410 1.33289 0.85179 0.76374 0.78083 0.80337 1.21157 1.22852 1.19200 1.21824 0.95669 0.93546 0.88711 1.23094 0.88547 0.98057 0.87216 0.82807 1.47422 1.32818 1.16299 1.10439 1.23882 1.00071 0.90640 1.03300 1.24010 1.05509 1.01747 0.89814 1.75047 1.11582 1.02163 1.26901 1.78240 1.16469 1.22238 0.91515 0.93000 0.90198 0.92043 0.92964 0.89992 0.93138 0.92588 0.92140 0.89996 0.94878 0.86640 0.89944 0.76396 0.95108 0.96809 0.94387 0.90541 0.93453 0.80246 0.76672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 8.84 71.98 0.64 -1.76 16 2 C 0.07 1.42 2.68 44.92 0.12 1.54 16 3 C -0.15 -2.71 8.99 71.98 0.65 -2.06 16 4 N -0.54 -13.81 4.37 -901.59 -3.94 -17.75 16 5 C 0.02 0.49 8.84 127.69 1.13 1.62 16 6 C 0.04 1.02 5.26 85.56 0.45 1.47 16 7 C 0.51 17.05 7.56 87.66 0.66 17.71 16 8 O -0.55 -22.89 13.95 -3.02 -0.04 -22.93 16 9 N -0.71 -22.55 5.16 -435.97 -2.25 -24.80 16 10 C 0.12 4.32 3.29 46.38 0.15 4.47 16 11 H 0.11 4.01 7.54 -2.38 -0.02 4.00 16 12 C 0.18 8.28 4.60 86.85 0.40 8.68 16 13 N -0.61 -27.38 3.39 -691.99 -2.35 -29.73 16 14 C -0.24 -12.22 10.24 84.03 0.86 -11.36 16 15 H 0.09 4.25 7.85 -2.91 -0.02 4.23 16 16 C -0.05 -2.81 5.40 84.86 0.46 -2.35 16 17 N -0.94 -53.98 10.68 21.65 0.23 -53.75 16 18 Si 0.97 43.64 29.56 68.60 2.03 45.67 16 19 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 20 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 21 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 22 C 0.13 4.29 6.32 86.73 0.55 4.84 16 23 C 0.13 3.88 3.97 46.18 0.18 4.06 16 24 H 0.15 3.54 8.14 -2.39 -0.02 3.52 16 25 N -0.28 -8.10 2.23 -321.55 -0.72 -8.81 16 26 C -0.03 -0.83 9.23 83.49 0.77 -0.06 16 27 C -0.05 -1.44 12.05 83.73 1.01 -0.43 16 28 N -0.29 -8.75 12.41 -58.26 -0.72 -9.47 16 29 N -0.11 -3.19 12.58 37.02 0.47 -2.72 16 30 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.06 0.97 6.26 -2.39 -0.01 0.95 16 33 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 35 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.06 1.01 6.20 -2.39 -0.01 0.99 16 37 H 0.06 1.84 5.88 -2.39 -0.01 1.82 16 38 H 0.08 1.77 6.01 -2.39 -0.01 1.75 16 39 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.12 2.70 5.83 -2.39 -0.01 2.68 16 41 H 0.08 1.72 8.12 -2.39 -0.02 1.70 16 42 H 0.40 11.81 7.03 -92.71 -0.65 11.16 16 43 H 0.03 1.71 6.94 -2.39 -0.02 1.70 16 44 H 0.01 0.68 7.09 -2.38 -0.02 0.67 16 45 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 46 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 47 H 0.05 1.57 7.42 -2.38 -0.02 1.55 16 48 H 0.18 6.10 7.58 -2.91 -0.02 6.07 16 49 H 0.22 4.19 8.06 -2.91 -0.02 4.17 16 Total: -1.00 -66.60 384.15 1.05 -65.55 By element: Atomic # 1 Polarization: 32.06 SS G_CDS: 0.31 Total: 32.37 kcal Atomic # 6 Polarization: 18.34 SS G_CDS: 8.03 Total: 26.37 kcal Atomic # 7 Polarization: -137.75 SS G_CDS: -9.28 Total: -147.03 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: -0.04 Total: -22.93 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -66.60 1.05 -65.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129461535.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.037 kcal (2) G-P(sol) polarization free energy of solvation -66.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds