Wall clock time and date at job start Tue Mar 31 2020 20:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47474 * 2 1 4 4 N 1.46894 * 109.47289 * 179.97438 * 3 2 1 5 5 C 1.46900 * 110.99750 * 66.04910 * 4 3 2 6 6 C 1.46901 * 111.00233 * 189.99997 * 4 3 2 7 7 C 1.50698 * 109.47237 * 169.99860 * 6 4 3 8 8 O 1.21280 * 119.99745 * 0.02562 * 7 6 4 9 9 N 1.34774 * 119.99753 * 179.97438 * 7 6 4 10 10 C 1.47425 * 125.65138 * 0.02907 * 9 7 6 11 11 C 1.54908 * 104.92961 * 204.15299 * 10 9 7 12 12 H 1.09008 * 111.00422 * 81.04917 * 11 10 9 13 13 N 1.46496 * 111.00674 * 204.86080 * 11 10 9 14 14 C 1.36940 * 120.00174 * 273.55140 * 13 11 10 15 15 H 1.08003 * 119.99978 * 359.97438 * 14 13 11 16 16 C 1.38805 * 120.00135 * 180.02562 * 14 13 11 17 17 N 1.31620 * 120.00135 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 120.00002 * 359.97438 * 16 14 13 19 19 H 1.48506 * 109.46862 * 90.00609 * 18 16 14 20 20 H 1.48504 * 109.47369 * 210.00040 * 18 16 14 21 21 H 1.48496 * 109.47052 * 330.00325 * 18 16 14 22 22 C 1.55154 * 101.58289 * 322.93718 * 11 10 9 23 23 H 1.09000 * 110.72373 * 154.04084 * 22 11 10 24 24 N 1.46499 * 110.71955 * 277.13799 * 22 11 10 25 25 C 1.35312 * 125.86815 * 84.71446 * 24 22 11 26 26 C 1.35347 * 106.17567 * 179.90626 * 25 24 22 27 27 N 1.33776 * 106.49815 * 0.35201 * 26 25 24 28 28 N 1.28632 * 108.88130 * 359.77299 * 27 26 25 29 29 C 1.47290 * 125.79121 * 180.02562 * 9 7 6 30 30 H 1.09006 * 109.46931 * 300.00227 * 1 2 3 31 31 H 1.08994 * 109.47207 * 59.99405 * 1 2 3 32 32 H 1.08998 * 109.47370 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47117 * 240.00269 * 2 1 3 34 34 H 1.09000 * 109.46913 * 120.00249 * 2 1 3 35 35 H 1.09003 * 109.46729 * 60.00031 * 3 2 1 36 36 H 1.08997 * 109.46721 * 300.00803 * 3 2 1 37 37 H 1.08998 * 109.47018 * 183.95311 * 5 4 3 38 38 H 1.09006 * 109.46957 * 303.95145 * 5 4 3 39 39 H 1.08998 * 109.47414 * 63.95618 * 5 4 3 40 40 H 1.09001 * 109.46887 * 49.99833 * 6 4 3 41 41 H 1.09000 * 109.47009 * 290.00377 * 6 4 3 42 42 H 1.09002 * 110.36696 * 85.25946 * 10 9 7 43 43 H 1.08995 * 110.36608 * 323.04783 * 10 9 7 44 44 H 0.97000 * 120.00071 * 93.54813 * 13 11 10 45 45 H 0.96995 * 120.00222 * 180.02562 * 17 16 14 46 46 H 1.08001 * 126.91520 * 0.02562 * 25 24 22 47 47 H 1.08004 * 126.75335 * 180.12675 * 26 25 24 48 48 H 1.09004 * 109.85762 * 59.50172 * 29 9 7 49 49 H 1.08995 * 110.00297 * 298.43119 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0359 0.8855 -1.2524 6 6 4.0355 2.7931 0.2388 7 6 5.5217 2.7182 0.4768 8 8 6.0867 1.6454 0.4501 9 7 6.2229 3.8435 0.7182 10 6 5.6656 5.2070 0.7782 11 6 6.8589 6.1405 0.4551 12 1 7.0282 6.2004 -0.6201 13 7 6.6525 7.4736 1.0263 14 6 5.9529 8.4185 0.3242 15 1 5.5536 8.1811 -0.6508 16 6 5.7578 9.6819 0.8652 17 7 5.0849 10.5899 0.1907 18 14 6.4490 10.0928 2.5513 19 1 7.8216 10.6401 2.4035 20 1 5.5816 11.1028 3.2092 21 1 6.4933 8.8623 3.3814 22 6 8.0287 5.4071 1.1630 23 1 8.9789 5.6457 0.6853 24 7 8.0671 5.7470 2.5875 25 6 7.3475 5.1490 3.5649 26 6 7.6905 5.7685 4.7184 27 7 8.5856 6.7080 4.3934 28 7 8.7872 6.6694 3.1236 29 6 7.6729 3.9184 0.9663 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.6768 1.9563 0.8900 36 1 1.6767 1.9563 -0.8899 37 1 5.1232 0.8322 -1.1975 38 1 3.6303 -0.1148 -1.4043 39 1 3.7453 1.5258 -2.0853 40 1 3.5486 3.2237 1.1138 41 1 3.8379 3.4187 -0.6316 42 1 5.2802 5.4158 1.7762 43 1 4.8775 5.3277 0.0350 44 1 7.0114 7.6870 1.9018 45 1 4.9489 11.4728 0.5685 46 1 6.6427 4.3390 3.4485 47 1 7.3128 5.5499 5.7064 48 1 8.2161 3.5173 0.1106 49 1 7.9271 3.3548 1.8639 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001130107354.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:10 Heat of formation + Delta-G solvation = 108.556764 kcal Electronic energy + Delta-G solvation = -30306.750384 eV Core-core repulsion = 26307.703959 eV Total energy + Delta-G solvation = -3999.046425 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.15725 -40.28819 -38.48590 -37.16302 -34.49795 -33.80866 -33.40603 -31.58327 -30.88668 -30.19699 -28.31565 -27.99795 -27.18999 -24.66255 -23.70756 -23.07120 -22.42558 -21.61314 -20.98526 -20.37634 -19.35996 -18.18085 -17.66797 -17.24532 -16.23834 -15.99902 -15.77341 -15.58603 -15.36678 -14.90104 -14.70410 -14.44686 -14.19405 -14.09364 -13.79023 -13.59270 -13.26864 -13.13501 -12.93694 -12.74208 -12.48893 -12.30063 -12.06763 -11.93366 -11.83770 -11.58860 -11.57674 -11.48647 -11.34082 -11.22874 -10.97587 -10.82582 -10.73710 -10.27570 -9.94864 -9.87385 -9.74669 -9.23178 -9.17240 -8.77088 -8.53552 -7.61118 -5.99459 -3.41051 1.78327 2.38338 2.54513 2.68765 2.80133 3.32553 3.37286 3.45442 3.70984 3.95304 4.37376 4.43919 4.52801 4.62833 4.65389 4.71223 4.76467 4.97305 5.00434 5.05992 5.12885 5.14475 5.21333 5.24314 5.27352 5.30669 5.36555 5.38721 5.39273 5.43377 5.49774 5.52342 5.62974 5.73903 5.83676 5.86023 5.91234 5.93777 6.03614 6.06527 6.18086 6.31355 6.69063 6.75265 6.82282 7.36230 7.68330 8.08275 8.17067 8.72275 8.91490 9.64973 9.78127 11.16456 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.011912 B = 0.003361 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.101267 B = 8329.962890 C = 9519.774410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C 0.054 3.946 4 N -0.526 5.526 5 C 0.015 3.985 6 C 0.040 3.960 7 C 0.535 3.465 8 O -0.527 6.527 9 N -0.620 5.620 10 C 0.066 3.934 11 C 0.174 3.826 12 H 0.099 0.901 13 N -0.731 5.731 14 C -0.267 4.267 15 H 0.095 0.905 16 C 0.021 3.979 17 N -0.921 5.921 18 Si 0.880 3.120 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.276 1.276 22 C 0.111 3.889 23 H 0.136 0.864 24 N -0.272 5.272 25 C -0.044 4.044 26 C -0.055 4.055 27 N -0.274 5.274 28 N -0.077 5.077 29 C 0.109 3.891 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.035 0.965 37 H 0.087 0.913 38 H 0.069 0.931 39 H 0.021 0.979 40 H 0.105 0.895 41 H 0.067 0.933 42 H 0.073 0.927 43 H 0.085 0.915 44 H 0.371 0.629 45 H 0.264 0.736 46 H 0.183 0.817 47 H 0.186 0.814 48 H 0.096 0.904 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.639 -19.973 0.008 20.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.074 4.074 4 N -0.250 5.250 5 C -0.132 4.132 6 C -0.091 4.091 7 C 0.323 3.677 8 O -0.403 6.403 9 N -0.357 5.357 10 C -0.060 4.060 11 C 0.060 3.940 12 H 0.116 0.884 13 N -0.374 5.374 14 C -0.396 4.396 15 H 0.113 0.887 16 C -0.177 4.177 17 N -0.566 5.566 18 Si 0.709 3.291 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.202 1.202 22 C 0.008 3.992 23 H 0.154 0.846 24 N -0.066 5.066 25 C -0.195 4.195 26 C -0.213 4.213 27 N -0.140 5.140 28 N -0.057 5.057 29 C -0.015 4.015 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.054 0.946 37 H 0.106 0.894 38 H 0.088 0.912 39 H 0.039 0.961 40 H 0.123 0.877 41 H 0.085 0.915 42 H 0.091 0.909 43 H 0.104 0.896 44 H 0.207 0.793 45 H 0.074 0.926 46 H 0.200 0.800 47 H 0.203 0.797 48 H 0.114 0.886 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.317 -19.609 -0.078 19.746 hybrid contribution -0.865 0.205 0.703 1.133 sum -3.183 -19.404 0.625 19.673 Atomic orbital electron populations 1.21743 0.95561 1.01765 1.01876 1.21529 0.95297 0.96173 1.02826 1.22221 0.86471 0.97640 1.01069 1.61663 1.07279 1.19858 1.36216 1.22615 1.02799 0.99424 0.88387 1.21950 0.92464 0.91456 1.03201 1.20159 0.88900 0.82294 0.76333 1.90668 1.71338 1.27601 1.50659 1.48602 1.08056 1.07674 1.71358 1.23610 1.00007 0.79668 1.02760 1.21645 0.88974 0.85593 0.97818 0.88371 1.42700 1.66034 1.07955 1.20695 1.18952 1.28026 0.91037 1.01545 0.88688 1.24644 0.99128 0.95933 0.97973 1.69689 1.43853 1.04927 1.38097 0.86641 0.79225 0.78298 0.84941 1.20341 1.21442 1.20234 1.23228 1.04369 0.95653 0.75998 0.84611 1.47330 1.27461 1.22988 1.08840 1.23496 1.03175 1.04527 0.88334 1.23529 1.00716 0.97215 0.99791 1.75104 1.15852 1.18998 1.04017 1.78361 1.15821 1.08286 1.03206 1.22145 0.82844 0.93255 1.03274 0.92580 0.92826 0.92540 0.91904 0.91049 0.90617 0.94638 0.89431 0.91229 0.96084 0.87715 0.91471 0.90883 0.89637 0.79332 0.92620 0.80026 0.79674 0.88624 0.90126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.91 37.16 0.37 -0.62 16 2 C -0.12 -0.94 5.86 -26.73 -0.16 -1.10 16 3 C 0.05 0.47 4.96 -3.82 -0.02 0.45 16 4 N -0.53 -5.67 4.50 -244.37 -1.10 -6.77 16 5 C 0.02 0.16 9.01 60.06 0.54 0.70 16 6 C 0.04 0.43 4.45 -4.98 -0.02 0.41 16 7 C 0.53 6.71 7.58 -10.99 -0.08 6.63 16 8 O -0.53 -8.04 14.65 5.56 0.08 -7.96 16 9 N -0.62 -7.29 3.34 -170.31 -0.57 -7.86 16 10 C 0.07 0.88 5.96 -2.53 -0.02 0.86 16 11 C 0.17 2.72 3.55 -65.79 -0.23 2.49 16 12 H 0.10 1.48 8.13 -51.92 -0.42 1.06 16 13 N -0.73 -15.72 5.02 -51.35 -0.26 -15.98 16 14 C -0.27 -6.91 10.47 -15.06 -0.16 -7.07 16 15 H 0.10 2.56 8.06 -52.48 -0.42 2.14 16 16 C 0.02 0.60 5.50 -17.43 -0.10 0.50 16 17 N -0.92 -27.58 13.97 55.49 0.78 -26.80 16 18 Si 0.88 22.52 27.73 -169.99 -4.71 17.81 16 19 H -0.28 -7.24 7.11 56.52 0.40 -6.84 16 20 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 21 H -0.28 -7.01 6.52 56.52 0.37 -6.64 16 22 C 0.11 1.46 3.97 -66.10 -0.26 1.19 16 23 H 0.14 1.58 8.14 -51.93 -0.42 1.16 16 24 N -0.27 -4.22 2.43 -52.99 -0.13 -4.35 16 25 C -0.04 -0.61 9.33 -17.05 -0.16 -0.77 16 26 C -0.06 -0.82 12.05 -17.74 -0.21 -1.03 16 27 N -0.27 -5.12 12.41 30.24 0.38 -4.74 16 28 N -0.08 -1.46 12.17 60.35 0.73 -0.72 16 29 C 0.11 1.20 5.92 -2.92 -0.02 1.18 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.49 6.47 -51.93 -0.34 0.15 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.63 7.93 -51.93 -0.41 0.22 16 36 H 0.04 0.30 8.12 -51.93 -0.42 -0.12 16 37 H 0.09 1.08 5.88 -51.93 -0.31 0.77 16 38 H 0.07 0.64 6.30 -51.93 -0.33 0.32 16 39 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 40 H 0.10 1.01 7.93 -51.93 -0.41 0.60 16 41 H 0.07 0.67 7.82 -51.93 -0.41 0.27 16 42 H 0.07 1.06 7.58 -51.93 -0.39 0.67 16 43 H 0.09 1.12 7.47 -51.93 -0.39 0.73 16 44 H 0.37 8.42 3.75 -40.82 -0.15 8.26 16 45 H 0.26 7.58 8.31 -40.82 -0.34 7.25 16 46 H 0.18 2.05 7.71 -52.49 -0.40 1.64 16 47 H 0.19 2.05 8.06 -52.48 -0.42 1.63 16 48 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 49 H 0.08 0.89 7.18 -51.93 -0.37 0.51 16 LS Contribution 389.18 15.07 5.86 5.86 Total: -1.00 -33.51 389.18 -7.19 -40.70 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -7.73 Total: 6.99 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: -0.53 Total: 3.83 kcal Atomic # 7 Polarization: -67.06 SS G_CDS: -0.17 Total: -67.23 kcal Atomic # 8 Polarization: -8.04 SS G_CDS: 0.08 Total: -7.96 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -4.71 Total: 17.81 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.51 -7.19 -40.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130107354.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.257 kcal (2) G-P(sol) polarization free energy of solvation -33.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds