Wall clock time and date at job start Tue Mar 31 2020 20:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47474 * 2 1 4 4 N 1.46894 * 109.47289 * 179.97438 * 3 2 1 5 5 C 1.46900 * 110.99750 * 66.04910 * 4 3 2 6 6 C 1.46901 * 111.00233 * 189.99997 * 4 3 2 7 7 C 1.50698 * 109.47237 * 169.99860 * 6 4 3 8 8 O 1.21280 * 119.99745 * 0.02562 * 7 6 4 9 9 N 1.34774 * 119.99753 * 179.97438 * 7 6 4 10 10 C 1.47425 * 125.65138 * 0.02907 * 9 7 6 11 11 C 1.54908 * 104.92961 * 204.15299 * 10 9 7 12 12 H 1.09008 * 111.00422 * 81.04917 * 11 10 9 13 13 N 1.46496 * 111.00674 * 204.86080 * 11 10 9 14 14 C 1.36940 * 120.00174 * 273.55140 * 13 11 10 15 15 H 1.08003 * 119.99978 * 359.97438 * 14 13 11 16 16 C 1.38805 * 120.00135 * 180.02562 * 14 13 11 17 17 N 1.31620 * 120.00135 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 120.00002 * 359.97438 * 16 14 13 19 19 H 1.48506 * 109.46862 * 90.00609 * 18 16 14 20 20 H 1.48504 * 109.47369 * 210.00040 * 18 16 14 21 21 H 1.48496 * 109.47052 * 330.00325 * 18 16 14 22 22 C 1.55154 * 101.58289 * 322.93718 * 11 10 9 23 23 H 1.09000 * 110.72373 * 154.04084 * 22 11 10 24 24 N 1.46499 * 110.71955 * 277.13799 * 22 11 10 25 25 C 1.35312 * 125.86815 * 84.71446 * 24 22 11 26 26 C 1.35347 * 106.17567 * 179.90626 * 25 24 22 27 27 N 1.33776 * 106.49815 * 0.35201 * 26 25 24 28 28 N 1.28632 * 108.88130 * 359.77299 * 27 26 25 29 29 C 1.47290 * 125.79121 * 180.02562 * 9 7 6 30 30 H 1.09006 * 109.46931 * 300.00227 * 1 2 3 31 31 H 1.08994 * 109.47207 * 59.99405 * 1 2 3 32 32 H 1.08998 * 109.47370 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47117 * 240.00269 * 2 1 3 34 34 H 1.09000 * 109.46913 * 120.00249 * 2 1 3 35 35 H 1.09003 * 109.46729 * 60.00031 * 3 2 1 36 36 H 1.08997 * 109.46721 * 300.00803 * 3 2 1 37 37 H 1.08998 * 109.47018 * 183.95311 * 5 4 3 38 38 H 1.09006 * 109.46957 * 303.95145 * 5 4 3 39 39 H 1.08998 * 109.47414 * 63.95618 * 5 4 3 40 40 H 1.09001 * 109.46887 * 49.99833 * 6 4 3 41 41 H 1.09000 * 109.47009 * 290.00377 * 6 4 3 42 42 H 1.09002 * 110.36696 * 85.25946 * 10 9 7 43 43 H 1.08995 * 110.36608 * 323.04783 * 10 9 7 44 44 H 0.97000 * 120.00071 * 93.54813 * 13 11 10 45 45 H 0.96995 * 120.00222 * 180.02562 * 17 16 14 46 46 H 1.08001 * 126.91520 * 0.02562 * 25 24 22 47 47 H 1.08004 * 126.75335 * 180.12675 * 26 25 24 48 48 H 1.09004 * 109.85762 * 59.50172 * 29 9 7 49 49 H 1.08995 * 110.00297 * 298.43119 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0359 0.8855 -1.2524 6 6 4.0355 2.7931 0.2388 7 6 5.5217 2.7182 0.4768 8 8 6.0867 1.6454 0.4501 9 7 6.2229 3.8435 0.7182 10 6 5.6656 5.2070 0.7782 11 6 6.8589 6.1405 0.4551 12 1 7.0282 6.2004 -0.6201 13 7 6.6525 7.4736 1.0263 14 6 5.9529 8.4185 0.3242 15 1 5.5536 8.1811 -0.6508 16 6 5.7578 9.6819 0.8652 17 7 5.0849 10.5899 0.1907 18 14 6.4490 10.0928 2.5513 19 1 7.8216 10.6401 2.4035 20 1 5.5816 11.1028 3.2092 21 1 6.4933 8.8623 3.3814 22 6 8.0287 5.4071 1.1630 23 1 8.9789 5.6457 0.6853 24 7 8.0671 5.7470 2.5875 25 6 7.3475 5.1490 3.5649 26 6 7.6905 5.7685 4.7184 27 7 8.5856 6.7080 4.3934 28 7 8.7872 6.6694 3.1236 29 6 7.6729 3.9184 0.9663 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.6768 1.9563 0.8900 36 1 1.6767 1.9563 -0.8899 37 1 5.1232 0.8322 -1.1975 38 1 3.6303 -0.1148 -1.4043 39 1 3.7453 1.5258 -2.0853 40 1 3.5486 3.2237 1.1138 41 1 3.8379 3.4187 -0.6316 42 1 5.2802 5.4158 1.7762 43 1 4.8775 5.3277 0.0350 44 1 7.0114 7.6870 1.9018 45 1 4.9489 11.4728 0.5685 46 1 6.6427 4.3390 3.4485 47 1 7.3128 5.5499 5.7064 48 1 8.2161 3.5173 0.1106 49 1 7.9271 3.3548 1.8639 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130107354.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:09 Heat of formation + Delta-G solvation = 84.268313 kcal Electronic energy + Delta-G solvation = -30307.803610 eV Core-core repulsion = 26307.703959 eV Total energy + Delta-G solvation = -4000.099651 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -44.35491 -41.31741 -39.51869 -38.06988 -36.12637 -35.02612 -34.07098 -33.43721 -32.05137 -31.34445 -29.59329 -28.95047 -27.88645 -25.88787 -25.18808 -23.92155 -23.67312 -22.87212 -21.71014 -21.57235 -20.44897 -19.88544 -18.82161 -18.30512 -17.31754 -17.14894 -16.71206 -16.55996 -16.51637 -16.18744 -15.95080 -15.52352 -15.38102 -15.05913 -14.90524 -14.75918 -14.65139 -14.26006 -14.14249 -13.80638 -13.54505 -13.26800 -13.11383 -12.98320 -12.90854 -12.78987 -12.73638 -12.62857 -12.52739 -12.36693 -12.18426 -11.96125 -11.94574 -11.90066 -11.44325 -11.31069 -11.01645 -10.84790 -10.36069 -9.83880 -9.49553 -9.30982 -8.13539 -5.48139 0.60426 1.26768 1.28810 1.33431 1.37413 1.56702 1.60450 1.70760 2.35529 2.80793 2.98784 3.11769 3.32599 3.44082 3.62186 3.65291 3.85436 3.96862 3.97602 4.12353 4.13954 4.17901 4.25010 4.28185 4.31123 4.48599 4.49346 4.54197 4.54932 4.58183 4.70005 4.72365 4.79983 4.85587 4.89725 4.94554 5.01682 5.13661 5.22263 5.24839 5.31541 5.44103 5.60219 5.67689 5.91239 6.07817 6.10414 6.36062 6.93616 7.10408 7.49522 7.67836 7.81564 9.06292 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.011912 B = 0.003361 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.101267 B = 8329.962890 C = 9519.774410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.117 4.117 3 C 0.054 3.946 4 N -0.540 5.540 5 C 0.020 3.980 6 C 0.040 3.960 7 C 0.538 3.462 8 O -0.553 6.553 9 N -0.612 5.612 10 C 0.082 3.918 11 C 0.161 3.839 12 H 0.108 0.892 13 N -0.742 5.742 14 C -0.228 4.228 15 H 0.083 0.917 16 C -0.039 4.039 17 N -0.967 5.967 18 Si 0.931 3.069 19 H -0.290 1.290 20 H -0.293 1.293 21 H -0.274 1.274 22 C 0.115 3.885 23 H 0.150 0.850 24 N -0.272 5.272 25 C -0.034 4.034 26 C -0.061 4.061 27 N -0.310 5.310 28 N -0.119 5.119 29 C 0.116 3.884 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.080 0.920 36 H 0.039 0.961 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.027 0.973 40 H 0.117 0.883 41 H 0.076 0.924 42 H 0.068 0.932 43 H 0.092 0.908 44 H 0.366 0.634 45 H 0.259 0.741 46 H 0.210 0.790 47 H 0.218 0.782 48 H 0.116 0.884 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.209 -22.363 0.273 22.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.155 4.155 3 C -0.073 4.073 4 N -0.265 5.265 5 C -0.128 4.128 6 C -0.090 4.090 7 C 0.327 3.673 8 O -0.430 6.430 9 N -0.348 5.348 10 C -0.043 4.043 11 C 0.050 3.950 12 H 0.125 0.875 13 N -0.385 5.385 14 C -0.359 4.359 15 H 0.101 0.899 16 C -0.232 4.232 17 N -0.616 5.616 18 Si 0.761 3.239 19 H -0.217 1.217 20 H -0.220 1.220 21 H -0.199 1.199 22 C 0.013 3.987 23 H 0.168 0.832 24 N -0.066 5.066 25 C -0.185 4.185 26 C -0.219 4.219 27 N -0.175 5.175 28 N -0.098 5.098 29 C -0.007 4.007 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.099 0.901 36 H 0.057 0.943 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.045 0.955 40 H 0.135 0.865 41 H 0.094 0.906 42 H 0.086 0.914 43 H 0.110 0.890 44 H 0.201 0.799 45 H 0.068 0.932 46 H 0.227 0.773 47 H 0.235 0.765 48 H 0.134 0.866 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.858 -22.057 0.188 22.242 hybrid contribution -0.679 0.763 0.570 1.169 sum -3.536 -21.294 0.758 21.599 Atomic orbital electron populations 1.21718 0.94531 1.02280 1.02106 1.21497 0.96136 0.95510 1.02350 1.22273 0.85283 0.98295 1.01470 1.61674 1.08436 1.19952 1.36416 1.22532 1.01517 1.00146 0.88598 1.21997 0.91171 0.91790 1.04069 1.20456 0.89546 0.81734 0.75516 1.90672 1.72003 1.28458 1.51876 1.48496 1.08316 1.06856 1.71177 1.23195 0.98713 0.79795 1.02646 1.21933 0.91037 0.83617 0.98435 0.87468 1.42709 1.65814 1.09592 1.20370 1.19025 1.25172 0.91116 1.00552 0.89925 1.25146 1.01007 0.96686 1.00393 1.69788 1.46901 1.05354 1.39590 0.85812 0.77706 0.77759 0.82583 1.21655 1.21984 1.19948 1.23334 1.04016 0.96416 0.74979 0.83199 1.47521 1.27027 1.22386 1.09660 1.23965 1.02537 1.04374 0.87645 1.24185 0.99781 0.96213 1.01679 1.75051 1.17484 1.20664 1.04343 1.78311 1.17731 1.10080 1.03633 1.22194 0.82477 0.91537 1.04517 0.92383 0.92543 0.91930 0.91963 0.91921 0.90119 0.94251 0.91410 0.90386 0.95491 0.86511 0.90639 0.91406 0.88991 0.79877 0.93153 0.77290 0.76504 0.86620 0.89397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.91 71.98 0.71 -0.92 16 2 C -0.12 -1.61 5.86 30.60 0.18 -1.43 16 3 C 0.05 0.83 4.96 86.31 0.43 1.26 16 4 N -0.54 -10.49 4.50 -927.05 -4.17 -14.66 16 5 C 0.02 0.38 9.01 127.69 1.15 1.53 16 6 C 0.04 0.75 4.45 85.56 0.38 1.13 16 7 C 0.54 12.02 7.58 87.66 0.66 12.68 16 8 O -0.55 -15.60 14.65 -3.03 -0.04 -15.65 16 9 N -0.61 -12.45 3.34 -811.12 -2.71 -15.16 16 10 C 0.08 1.97 5.96 86.85 0.52 2.48 16 11 C 0.16 4.68 3.55 46.38 0.16 4.85 16 12 H 0.11 2.97 8.13 -2.38 -0.02 2.96 16 13 N -0.74 -30.85 5.02 -316.38 -1.59 -32.44 16 14 C -0.23 -11.68 10.47 84.03 0.88 -10.80 16 15 H 0.08 4.41 8.06 -2.91 -0.02 4.39 16 16 C -0.04 -2.20 5.50 84.86 0.47 -1.73 16 17 N -0.97 -58.92 13.97 21.65 0.30 -58.62 16 18 Si 0.93 47.31 27.73 68.60 1.90 49.21 16 19 H -0.29 -15.09 7.11 99.48 0.71 -14.38 16 20 H -0.29 -14.93 7.11 99.48 0.71 -14.23 16 21 H -0.27 -13.55 6.52 99.48 0.65 -12.91 16 22 C 0.12 2.72 3.97 46.18 0.18 2.91 16 23 H 0.15 3.13 8.14 -2.39 -0.02 3.11 16 24 N -0.27 -7.85 2.43 -321.55 -0.78 -8.63 16 25 C -0.03 -0.84 9.33 83.49 0.78 -0.06 16 26 C -0.06 -1.67 12.05 83.73 1.01 -0.66 16 27 N -0.31 -11.26 12.41 -58.25 -0.72 -11.99 16 28 N -0.12 -4.35 12.17 37.02 0.45 -3.90 16 29 C 0.12 2.17 5.92 86.68 0.51 2.68 16 30 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 31 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.06 0.85 6.47 -2.39 -0.02 0.84 16 34 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.08 1.15 7.93 -2.39 -0.02 1.13 16 36 H 0.04 0.58 8.12 -2.39 -0.02 0.56 16 37 H 0.07 1.58 5.88 -2.39 -0.01 1.57 16 38 H 0.08 1.32 6.30 -2.38 -0.02 1.30 16 39 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 40 H 0.12 1.89 7.93 -2.39 -0.02 1.87 16 41 H 0.08 1.30 7.82 -2.39 -0.02 1.28 16 42 H 0.07 1.76 7.58 -2.39 -0.02 1.74 16 43 H 0.09 2.13 7.47 -2.39 -0.02 2.11 16 44 H 0.37 16.15 3.75 -92.71 -0.35 15.81 16 45 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 46 H 0.21 3.88 7.71 -2.91 -0.02 3.86 16 47 H 0.22 4.16 8.06 -2.91 -0.02 4.13 16 48 H 0.12 1.80 8.14 -2.38 -0.02 1.78 16 49 H 0.09 1.61 7.18 -2.39 -0.02 1.59 16 Total: -1.00 -72.93 389.18 1.22 -71.71 By element: Atomic # 1 Polarization: 25.65 SS G_CDS: 0.55 Total: 26.20 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: 8.03 Total: 13.92 kcal Atomic # 7 Polarization: -136.17 SS G_CDS: -9.22 Total: -145.39 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: -0.04 Total: -15.65 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 1.90 Total: 49.21 kcal Total: -72.93 1.22 -71.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130107354.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.981 kcal (2) G-P(sol) polarization free energy of solvation -72.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds