Wall clock time and date at job start Tue Mar 31 2020 20:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53009 * 109.46979 * 2 1 4 4 C 1.53004 * 109.47338 * 240.00315 * 2 1 3 5 5 N 1.46503 * 109.47257 * 119.99915 * 2 1 3 6 6 N 1.28714 * 125.31863 * 239.97941 * 5 2 1 7 7 N 1.28981 * 108.98878 * 180.02562 * 6 5 2 8 8 C 1.34192 * 107.25096 * 359.97438 * 7 6 5 9 9 C 1.48006 * 126.70060 * 180.02562 * 8 7 6 10 10 O 1.21535 * 119.99905 * 179.97438 * 9 8 7 11 11 N 1.34780 * 119.99795 * 359.97438 * 9 8 7 12 12 C 1.46500 * 119.99499 * 174.27560 * 11 9 8 13 13 C 1.53006 * 109.46678 * 184.87430 * 12 11 9 14 14 C 1.53000 * 109.46721 * 178.80013 * 13 12 11 15 15 C 1.52997 * 115.55409 * 40.15543 * 14 13 12 16 16 N 1.46506 * 109.46585 * 65.20728 * 15 14 13 17 17 C 1.36940 * 119.99691 * 185.11966 * 16 15 14 18 18 H 1.08001 * 119.99569 * 4.91009 * 17 16 15 19 19 C 1.38809 * 119.99982 * 184.91146 * 17 16 15 20 20 N 1.31620 * 119.99913 * 183.49762 * 19 17 16 21 21 Si 1.86793 * 119.99965 * 3.49557 * 19 17 16 22 22 H 1.48496 * 109.47088 * 91.19828 * 21 19 17 23 23 H 1.48502 * 109.47125 * 211.19865 * 21 19 17 24 24 H 1.48496 * 109.47391 * 331.19784 * 21 19 17 25 25 C 1.53001 * 117.49399 * 254.44737 * 14 13 12 26 26 C 1.52999 * 60.00076 * 252.51590 * 25 14 13 27 27 N 1.28870 * 125.31965 * 60.00452 * 5 2 1 28 28 H 1.08999 * 109.47182 * 299.99882 * 1 2 3 29 29 H 1.08997 * 109.47573 * 60.00205 * 1 2 3 30 30 H 1.09003 * 109.47019 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47130 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.46801 * 300.00269 * 3 2 1 33 33 H 1.08994 * 109.46615 * 59.99932 * 3 2 1 34 34 H 1.08995 * 109.46643 * 299.99487 * 4 2 1 35 35 H 1.08998 * 109.46938 * 59.99732 * 4 2 1 36 36 H 1.08994 * 109.46995 * 179.97438 * 4 2 1 37 37 H 0.96996 * 120.00012 * 354.27229 * 11 9 8 38 38 H 1.08997 * 109.47528 * 304.87594 * 12 11 9 39 39 H 1.09004 * 109.47213 * 64.88103 * 12 11 9 40 40 H 1.08997 * 109.47000 * 298.79921 * 13 12 11 41 41 H 1.08993 * 109.47012 * 58.79792 * 13 12 11 42 42 H 1.08999 * 109.47153 * 185.19787 * 15 14 13 43 43 H 1.08993 * 109.47229 * 305.20247 * 15 14 13 44 44 H 0.96991 * 120.00341 * 5.11385 * 16 15 14 45 45 H 0.96995 * 120.00199 * 179.97438 * 20 19 17 46 46 H 1.09000 * 117.50557 * 0.02562 * 25 14 13 47 47 H 1.09009 * 117.49981 * 145.02504 * 25 14 13 48 48 H 1.09000 * 117.49819 * 252.51408 * 26 25 14 49 49 H 1.08993 * 117.50112 * 107.49260 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0183 -0.6906 1.1962 6 7 2.7618 -0.1663 2.1067 7 7 3.0038 -1.0521 3.0125 8 6 2.3779 -2.1802 2.6432 9 6 2.3699 -3.4672 3.3740 10 8 1.7582 -4.4168 2.9255 11 7 3.0410 -3.5860 4.5367 12 6 2.9317 -4.8173 5.3229 13 6 3.6860 -4.6480 6.6433 14 6 3.5468 -5.9231 7.4773 15 6 3.6371 -7.2356 6.6964 16 7 4.9820 -7.3768 6.1327 17 6 5.2696 -8.4274 5.3027 18 1 4.4863 -9.1066 5.0001 19 6 6.5678 -8.6192 4.8503 20 7 6.8315 -9.5872 3.9983 21 14 7.9405 -7.5036 5.4506 22 1 8.5662 -8.0956 6.6602 23 1 8.9636 -7.3598 4.3840 24 1 7.3829 -6.1685 5.7849 25 6 2.6034 -5.8802 8.6812 26 6 4.1180 -5.9046 8.8966 27 7 1.7711 -1.9181 1.5010 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6765 1.9564 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6767 -1.7488 -1.2492 35 1 1.6767 -0.2073 -2.1392 36 1 3.1300 -0.7208 -1.2495 37 1 3.5964 -2.8564 4.8529 38 1 1.8817 -5.0252 5.5285 39 1 3.3632 -5.6463 4.7618 40 1 4.7401 -4.4613 6.4381 41 1 3.2685 -3.8056 7.1948 42 1 3.4342 -8.0715 7.3659 43 1 2.9038 -7.2298 5.8900 44 1 5.6686 -6.7263 6.3474 45 1 7.7386 -9.7210 3.6819 46 1 2.0817 -4.9438 8.8787 47 1 2.0468 -6.7873 8.9170 48 1 4.5578 -6.8278 9.2741 49 1 4.5930 -4.9842 9.2361 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164596373.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:03 Heat of formation + Delta-G solvation = 127.400603 kcal Electronic energy + Delta-G solvation = -28934.346543 eV Core-core repulsion = 24936.117248 eV Total energy + Delta-G solvation = -3998.229295 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -44.65417 -39.66948 -38.38878 -37.99598 -34.98813 -34.02381 -33.72485 -32.76511 -31.10743 -30.17477 -28.20684 -28.13879 -26.34287 -25.63398 -24.73652 -23.09795 -22.43203 -21.78840 -21.22076 -20.75223 -19.00214 -18.10043 -17.64163 -17.33089 -16.96852 -16.12282 -15.53097 -15.07270 -14.85144 -14.78036 -14.52585 -14.46302 -14.16729 -13.93323 -13.57363 -13.48193 -13.16558 -13.06538 -12.96649 -12.60263 -12.47955 -12.43621 -12.35079 -12.10945 -11.92967 -11.73049 -11.60394 -11.43071 -11.28439 -11.23188 -11.12820 -10.88507 -10.73042 -10.57952 -10.33074 -10.10329 -9.84917 -9.56761 -9.43443 -9.02482 -8.82766 -7.15648 -5.71074 -3.06022 0.82166 1.29771 1.38547 2.73761 3.06338 3.40094 3.44132 3.48998 3.61758 3.86527 3.92107 3.96701 4.03347 4.36591 4.64056 4.81099 4.83884 4.86374 4.87277 4.95214 5.00866 5.04032 5.05878 5.06764 5.09442 5.24186 5.30917 5.40639 5.44807 5.51157 5.57479 5.61190 5.68837 5.71780 5.81814 5.84669 5.89175 6.11035 6.17455 6.29698 6.33157 6.37454 6.44856 6.70306 6.76146 7.33937 7.93134 8.07154 8.08470 8.48414 9.28454 10.00274 10.21255 11.47499 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.012640 B = 0.002572 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.610921 B =10882.403415 C =12031.812880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.176 3.824 3 C -0.153 4.153 4 C -0.162 4.162 5 N -0.126 5.126 6 N -0.057 5.057 7 N -0.258 5.258 8 C 0.130 3.870 9 C 0.613 3.387 10 O -0.502 6.502 11 N -0.704 5.704 12 C 0.118 3.882 13 C -0.086 4.086 14 C -0.127 4.127 15 C 0.188 3.812 16 N -0.751 5.751 17 C -0.240 4.240 18 H 0.090 0.910 19 C 0.004 3.996 20 N -0.934 5.934 21 Si 0.886 3.114 22 H -0.285 1.285 23 H -0.293 1.293 24 H -0.278 1.278 25 C -0.171 4.171 26 C -0.170 4.170 27 N -0.244 5.244 28 H 0.068 0.932 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.069 0.931 37 H 0.407 0.593 38 H 0.073 0.927 39 H 0.096 0.904 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.025 0.975 43 H 0.039 0.961 44 H 0.363 0.637 45 H 0.258 0.742 46 H 0.090 0.910 47 H 0.094 0.906 48 H 0.097 0.903 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.025 25.321 -4.167 28.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.096 3.904 3 C -0.211 4.211 4 C -0.220 4.220 5 N -0.041 5.041 6 N -0.050 5.050 7 N -0.133 5.133 8 C -0.154 4.154 9 C 0.392 3.608 10 O -0.372 6.372 11 N -0.356 5.356 12 C -0.004 4.004 13 C -0.124 4.124 14 C -0.128 4.128 15 C 0.061 3.939 16 N -0.397 5.397 17 C -0.370 4.370 18 H 0.107 0.893 19 C -0.192 4.192 20 N -0.582 5.582 21 Si 0.717 3.283 22 H -0.212 1.212 23 H -0.219 1.219 24 H -0.204 1.204 25 C -0.209 4.209 26 C -0.207 4.207 27 N -0.097 5.097 28 H 0.087 0.913 29 H 0.111 0.889 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.110 0.890 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.111 0.889 36 H 0.088 0.912 37 H 0.243 0.757 38 H 0.091 0.909 39 H 0.114 0.886 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.043 0.957 43 H 0.057 0.943 44 H 0.196 0.804 45 H 0.068 0.932 46 H 0.109 0.891 47 H 0.113 0.887 48 H 0.116 0.884 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -13.393 24.983 -4.752 28.742 hybrid contribution 1.344 0.662 0.570 1.603 sum -12.048 25.645 -4.183 28.641 Atomic orbital electron populations 1.22262 0.90547 1.04900 1.04168 1.21538 0.96406 0.93080 0.79399 1.22112 1.03293 0.91278 1.04422 1.22275 1.02639 1.02255 0.94839 1.50758 1.29763 1.05416 1.18119 1.78852 1.08482 1.22030 0.95589 1.76123 1.19475 0.98204 1.19496 1.25411 0.99436 0.97220 0.93364 1.16073 0.80674 0.83209 0.80860 1.90890 1.43061 1.37013 1.66244 1.45704 1.48266 1.20243 1.21392 1.21674 1.01350 0.85886 0.91456 1.21197 1.01063 0.95918 0.94233 1.21639 1.04943 0.96836 0.89403 1.20234 0.88561 0.90645 0.94457 1.42683 1.08221 1.30804 1.58001 1.19058 0.94823 1.03540 1.19596 0.89268 1.24678 0.96983 0.98038 0.99471 1.69708 1.19780 1.33407 1.35342 0.86527 0.83045 0.80682 0.78089 1.21216 1.21934 1.20448 1.23034 0.92884 1.02816 1.02151 1.22964 0.95828 1.03111 0.98769 1.75008 1.20940 0.98743 1.14975 0.91305 0.88912 0.90119 0.90447 0.89042 0.90518 0.90065 0.88905 0.91186 0.75735 0.90858 0.88597 0.90726 0.91579 0.95694 0.94336 0.80435 0.93150 0.89114 0.88736 0.88439 0.89258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.82 8.66 37.15 0.32 -0.50 16 2 C 0.18 1.16 1.30 -131.81 -0.17 0.99 16 3 C -0.15 -0.67 7.90 37.16 0.29 -0.38 16 4 C -0.16 -0.91 8.66 37.16 0.32 -0.59 16 5 N -0.13 -1.39 3.72 0.53 0.00 -1.39 16 6 N -0.06 -0.70 12.21 60.35 0.74 0.04 16 7 N -0.26 -3.56 12.27 32.10 0.39 -3.17 16 8 C 0.13 1.94 8.14 -156.24 -1.27 0.67 16 9 C 0.61 10.01 7.83 -12.25 -0.10 9.92 16 10 O -0.50 -9.90 17.11 5.33 0.09 -9.81 16 11 N -0.70 -9.97 5.55 -61.19 -0.34 -10.31 16 12 C 0.12 1.79 4.80 -4.04 -0.02 1.77 16 13 C -0.09 -1.16 5.37 -26.73 -0.14 -1.31 16 14 C -0.13 -1.88 1.83 -154.51 -0.28 -2.17 16 15 C 0.19 3.61 5.32 -4.04 -0.02 3.59 16 16 N -0.75 -17.69 5.29 -59.91 -0.32 -18.01 16 17 C -0.24 -6.87 10.47 -15.06 -0.16 -7.03 16 18 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 19 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 20 N -0.93 -29.93 13.97 55.49 0.78 -29.15 16 21 Si 0.89 22.53 27.90 -169.99 -4.74 17.78 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 23 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 24 H -0.28 -6.56 6.30 56.52 0.36 -6.21 16 25 C -0.17 -2.09 9.87 -26.73 -0.26 -2.35 16 26 C -0.17 -2.28 9.97 -26.73 -0.27 -2.54 16 27 N -0.24 -3.40 11.85 32.11 0.38 -3.01 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.09 0.21 8.14 -51.93 -0.42 -0.22 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 33 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.41 4.88 8.24 -40.82 -0.34 4.54 16 38 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.10 1.81 6.85 -51.93 -0.36 1.46 16 40 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 41 H 0.07 0.73 7.95 -51.93 -0.41 0.31 16 42 H 0.03 0.49 8.09 -51.93 -0.42 0.07 16 43 H 0.04 0.77 6.69 -51.93 -0.35 0.42 16 44 H 0.36 8.39 5.46 -40.82 -0.22 8.16 16 45 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16 46 H 0.09 0.95 8.09 -51.93 -0.42 0.53 16 47 H 0.09 1.13 8.14 -51.92 -0.42 0.70 16 48 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 49 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 407.70 15.07 6.14 6.14 Total: -1.00 -35.75 407.70 -6.76 -42.51 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: -8.04 Total: 8.29 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: -1.85 Total: 0.09 kcal Atomic # 7 Polarization: -66.64 SS G_CDS: 1.63 Total: -65.01 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.09 Total: -9.81 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -4.74 Total: 17.78 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -35.75 -6.76 -42.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164596373.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.913 kcal (2) G-P(sol) polarization free energy of solvation -35.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds