Wall clock time and date at job start Tue Mar 31 2020 20:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53009 * 109.46979 * 2 1 4 4 C 1.53004 * 109.47338 * 240.00315 * 2 1 3 5 5 N 1.46503 * 109.47257 * 119.99915 * 2 1 3 6 6 N 1.28714 * 125.31863 * 239.97941 * 5 2 1 7 7 N 1.28981 * 108.98878 * 180.02562 * 6 5 2 8 8 C 1.34192 * 107.25096 * 359.97438 * 7 6 5 9 9 C 1.48006 * 126.70060 * 180.02562 * 8 7 6 10 10 O 1.21535 * 119.99905 * 179.97438 * 9 8 7 11 11 N 1.34780 * 119.99795 * 359.97438 * 9 8 7 12 12 C 1.46500 * 119.99499 * 174.27560 * 11 9 8 13 13 C 1.53006 * 109.46678 * 184.87430 * 12 11 9 14 14 C 1.53000 * 109.46721 * 178.80013 * 13 12 11 15 15 C 1.52997 * 115.55409 * 40.15543 * 14 13 12 16 16 N 1.46506 * 109.46585 * 65.20728 * 15 14 13 17 17 C 1.36940 * 119.99691 * 185.11966 * 16 15 14 18 18 H 1.08001 * 119.99569 * 4.91009 * 17 16 15 19 19 C 1.38809 * 119.99982 * 184.91146 * 17 16 15 20 20 N 1.31620 * 119.99913 * 183.49762 * 19 17 16 21 21 Si 1.86793 * 119.99965 * 3.49557 * 19 17 16 22 22 H 1.48496 * 109.47088 * 91.19828 * 21 19 17 23 23 H 1.48502 * 109.47125 * 211.19865 * 21 19 17 24 24 H 1.48496 * 109.47391 * 331.19784 * 21 19 17 25 25 C 1.53001 * 117.49399 * 254.44737 * 14 13 12 26 26 C 1.52999 * 60.00076 * 252.51590 * 25 14 13 27 27 N 1.28870 * 125.31965 * 60.00452 * 5 2 1 28 28 H 1.08999 * 109.47182 * 299.99882 * 1 2 3 29 29 H 1.08997 * 109.47573 * 60.00205 * 1 2 3 30 30 H 1.09003 * 109.47019 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47130 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.46801 * 300.00269 * 3 2 1 33 33 H 1.08994 * 109.46615 * 59.99932 * 3 2 1 34 34 H 1.08995 * 109.46643 * 299.99487 * 4 2 1 35 35 H 1.08998 * 109.46938 * 59.99732 * 4 2 1 36 36 H 1.08994 * 109.46995 * 179.97438 * 4 2 1 37 37 H 0.96996 * 120.00012 * 354.27229 * 11 9 8 38 38 H 1.08997 * 109.47528 * 304.87594 * 12 11 9 39 39 H 1.09004 * 109.47213 * 64.88103 * 12 11 9 40 40 H 1.08997 * 109.47000 * 298.79921 * 13 12 11 41 41 H 1.08993 * 109.47012 * 58.79792 * 13 12 11 42 42 H 1.08999 * 109.47153 * 185.19787 * 15 14 13 43 43 H 1.08993 * 109.47229 * 305.20247 * 15 14 13 44 44 H 0.96991 * 120.00341 * 5.11385 * 16 15 14 45 45 H 0.96995 * 120.00199 * 179.97438 * 20 19 17 46 46 H 1.09000 * 117.50557 * 0.02562 * 25 14 13 47 47 H 1.09009 * 117.49981 * 145.02504 * 25 14 13 48 48 H 1.09000 * 117.49819 * 252.51408 * 26 25 14 49 49 H 1.08993 * 117.50112 * 107.49260 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0183 -0.6906 1.1962 6 7 2.7618 -0.1663 2.1067 7 7 3.0038 -1.0521 3.0125 8 6 2.3779 -2.1802 2.6432 9 6 2.3699 -3.4672 3.3740 10 8 1.7582 -4.4168 2.9255 11 7 3.0410 -3.5860 4.5367 12 6 2.9317 -4.8173 5.3229 13 6 3.6860 -4.6480 6.6433 14 6 3.5468 -5.9231 7.4773 15 6 3.6371 -7.2356 6.6964 16 7 4.9820 -7.3768 6.1327 17 6 5.2696 -8.4274 5.3027 18 1 4.4863 -9.1066 5.0001 19 6 6.5678 -8.6192 4.8503 20 7 6.8315 -9.5872 3.9983 21 14 7.9405 -7.5036 5.4506 22 1 8.5662 -8.0956 6.6602 23 1 8.9636 -7.3598 4.3840 24 1 7.3829 -6.1685 5.7849 25 6 2.6034 -5.8802 8.6812 26 6 4.1180 -5.9046 8.8966 27 7 1.7711 -1.9181 1.5010 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6765 1.9564 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6767 -1.7488 -1.2492 35 1 1.6767 -0.2073 -2.1392 36 1 3.1300 -0.7208 -1.2495 37 1 3.5964 -2.8564 4.8529 38 1 1.8817 -5.0252 5.5285 39 1 3.3632 -5.6463 4.7618 40 1 4.7401 -4.4613 6.4381 41 1 3.2685 -3.8056 7.1948 42 1 3.4342 -8.0715 7.3659 43 1 2.9038 -7.2298 5.8900 44 1 5.6686 -6.7263 6.3474 45 1 7.7386 -9.7210 3.6819 46 1 2.0817 -4.9438 8.8787 47 1 2.0468 -6.7873 8.9170 48 1 4.5578 -6.8278 9.2741 49 1 4.5930 -4.9842 9.2361 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164596373.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:02 Heat of formation + Delta-G solvation = 100.855798 kcal Electronic energy + Delta-G solvation = -28935.497612 eV Core-core repulsion = 24936.117248 eV Total energy + Delta-G solvation = -3999.380364 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -45.64619 -40.94427 -39.59508 -38.64327 -36.28777 -35.93105 -34.71306 -33.71922 -33.21012 -31.36404 -28.65048 -28.56144 -28.07338 -26.74368 -25.65076 -24.30046 -24.14813 -23.02943 -22.29952 -21.69473 -20.47749 -19.53769 -18.80288 -18.60458 -17.75159 -17.40409 -16.77071 -16.59484 -16.31600 -15.83982 -15.45104 -15.30956 -15.21587 -15.12988 -15.07427 -14.74383 -14.30986 -14.08733 -14.00805 -13.50966 -13.42597 -13.32584 -13.24870 -13.08136 -12.86914 -12.86522 -12.68487 -12.63610 -12.39932 -12.21912 -12.18729 -12.15054 -12.14012 -11.94987 -11.84490 -11.60877 -11.51576 -11.08036 -10.94503 -10.56203 -10.29825 -9.25777 -8.02077 -5.34504 -0.20901 0.20355 0.60202 1.35420 1.40930 1.47652 1.62550 1.81934 2.48598 2.73246 2.85867 2.92507 3.28926 3.46090 3.54116 3.61638 3.71938 3.76489 3.91413 3.96650 4.06836 4.12087 4.26788 4.38218 4.40949 4.46968 4.50330 4.56353 4.58419 4.61938 4.71042 4.71343 4.88698 4.92560 4.96279 5.00314 5.08947 5.11922 5.14159 5.14815 5.17429 5.20549 5.26558 5.35022 5.38964 5.77097 6.16270 6.22359 6.80004 6.99186 7.10097 7.86432 8.08187 9.20075 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.012640 B = 0.002572 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.610921 B =10882.403415 C =12031.812880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.159 3.841 3 C -0.149 4.149 4 C -0.160 4.160 5 N -0.109 5.109 6 N -0.055 5.055 7 N -0.264 5.264 8 C 0.114 3.886 9 C 0.612 3.388 10 O -0.547 6.547 11 N -0.688 5.688 12 C 0.125 3.875 13 C -0.076 4.076 14 C -0.147 4.147 15 C 0.186 3.814 16 N -0.748 5.748 17 C -0.230 4.230 18 H 0.050 0.950 19 C -0.067 4.067 20 N -0.987 5.987 21 Si 0.958 3.042 22 H -0.278 1.278 23 H -0.299 1.299 24 H -0.247 1.247 25 C -0.146 4.146 26 C -0.165 4.165 27 N -0.259 5.259 28 H 0.065 0.935 29 H 0.130 0.870 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.128 0.872 33 H 0.072 0.928 34 H 0.060 0.940 35 H 0.130 0.870 36 H 0.060 0.940 37 H 0.421 0.579 38 H 0.076 0.924 39 H 0.051 0.949 40 H 0.069 0.931 41 H 0.104 0.896 42 H 0.019 0.981 43 H 0.025 0.975 44 H 0.368 0.632 45 H 0.257 0.743 46 H 0.120 0.880 47 H 0.094 0.906 48 H 0.083 0.917 49 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.281 29.482 -2.997 32.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.080 3.920 3 C -0.207 4.207 4 C -0.218 4.218 5 N -0.026 5.026 6 N -0.048 5.048 7 N -0.138 5.138 8 C -0.170 4.170 9 C 0.393 3.607 10 O -0.421 6.421 11 N -0.340 5.340 12 C 0.002 3.998 13 C -0.113 4.113 14 C -0.149 4.149 15 C 0.060 3.940 16 N -0.394 5.394 17 C -0.361 4.361 18 H 0.068 0.932 19 C -0.258 4.258 20 N -0.638 5.638 21 Si 0.785 3.215 22 H -0.204 1.204 23 H -0.226 1.226 24 H -0.171 1.171 25 C -0.184 4.184 26 C -0.202 4.202 27 N -0.113 5.113 28 H 0.084 0.916 29 H 0.148 0.852 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.146 0.854 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.149 0.851 36 H 0.079 0.921 37 H 0.258 0.742 38 H 0.094 0.906 39 H 0.070 0.930 40 H 0.087 0.913 41 H 0.122 0.878 42 H 0.037 0.963 43 H 0.043 0.957 44 H 0.202 0.798 45 H 0.065 0.935 46 H 0.138 0.862 47 H 0.113 0.887 48 H 0.102 0.898 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -13.663 29.209 -3.525 32.438 hybrid contribution 1.273 -0.638 0.095 1.427 sum -12.390 28.571 -3.429 31.330 Atomic orbital electron populations 1.22307 0.89181 1.04197 1.05839 1.22245 0.97551 0.94088 0.78079 1.22182 1.02808 0.89639 1.06054 1.22325 1.02054 1.01555 0.95862 1.51335 1.28274 1.04520 1.18463 1.78776 1.08649 1.21642 0.95689 1.76080 1.19679 0.97876 1.20169 1.25103 1.00787 0.97064 0.94000 1.16293 0.80097 0.83273 0.81085 1.90860 1.45104 1.38642 1.67466 1.45593 1.47596 1.20240 1.20592 1.21511 1.01513 0.84850 0.91933 1.21156 1.00633 0.96464 0.93052 1.21440 1.08631 0.94732 0.90049 1.20304 0.85905 0.93508 0.94300 1.42609 1.10147 1.29377 1.57277 1.19014 0.93873 1.03767 1.19428 0.93216 1.25550 0.99942 1.00250 1.00095 1.69906 1.20279 1.36115 1.37481 0.85357 0.78962 0.79887 0.77272 1.20409 1.22587 1.17130 1.23150 0.92421 1.04340 0.98450 1.23043 0.96975 1.03669 0.96520 1.74975 1.21265 1.00214 1.14871 0.91639 0.85203 0.91990 0.91239 0.85414 0.90856 0.92077 0.85122 0.92112 0.74174 0.90594 0.93012 0.91255 0.87755 0.96325 0.95694 0.79803 0.93450 0.86166 0.88741 0.89816 0.86848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.30 8.66 71.98 0.62 -0.67 16 2 C 0.16 1.81 1.30 3.61 0.00 1.82 16 3 C -0.15 -0.91 7.90 71.99 0.57 -0.34 16 4 C -0.16 -1.56 8.66 71.98 0.62 -0.93 16 5 N -0.11 -2.34 3.72 -152.24 -0.57 -2.91 16 6 N -0.06 -1.31 12.21 37.02 0.45 -0.86 16 7 N -0.26 -7.12 12.27 -52.36 -0.64 -7.77 16 8 C 0.11 3.44 8.14 137.15 1.12 4.55 16 9 C 0.61 20.50 7.83 86.83 0.68 21.18 16 10 O -0.55 -22.66 17.11 -3.83 -0.07 -22.73 16 11 N -0.69 -19.24 5.55 -465.80 -2.58 -21.83 16 12 C 0.12 3.74 4.80 86.38 0.41 4.16 16 13 C -0.08 -1.84 5.37 30.60 0.16 -1.67 16 14 C -0.15 -4.06 1.83 -52.18 -0.10 -4.15 16 15 C 0.19 7.21 5.32 86.38 0.46 7.67 16 16 N -0.75 -35.53 5.29 -343.45 -1.82 -37.34 16 17 C -0.23 -13.62 10.47 84.03 0.88 -12.74 16 18 H 0.05 3.27 8.06 -2.91 -0.02 3.25 16 19 C -0.07 -4.11 5.50 84.86 0.47 -3.65 16 20 N -0.99 -65.71 13.97 21.65 0.30 -65.41 16 21 Si 0.96 46.81 27.90 68.60 1.91 48.72 16 22 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 23 H -0.30 -14.86 7.11 99.48 0.71 -14.15 16 24 H -0.25 -10.64 6.30 99.48 0.63 -10.02 16 25 C -0.15 -3.04 9.87 30.59 0.30 -2.73 16 26 C -0.17 -3.86 9.97 30.59 0.31 -3.56 16 27 N -0.26 -7.32 11.85 -52.31 -0.62 -7.94 16 28 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.13 0.10 8.14 -2.39 -0.02 0.08 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.13 -0.12 8.14 -2.39 -0.02 -0.14 16 33 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.13 0.26 8.14 -2.39 -0.02 0.24 16 36 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.42 9.47 8.24 -92.71 -0.76 8.71 16 38 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.05 2.04 6.85 -2.38 -0.02 2.02 16 40 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.10 1.80 7.95 -2.39 -0.02 1.78 16 42 H 0.02 0.75 8.09 -2.39 -0.02 0.73 16 43 H 0.03 1.04 6.69 -2.39 -0.02 1.02 16 44 H 0.37 16.56 5.46 -92.71 -0.51 16.05 16 45 H 0.26 16.25 8.31 -92.71 -0.77 15.48 16 46 H 0.12 1.87 8.09 -2.39 -0.02 1.85 16 47 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16 48 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 49 H 0.11 2.14 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -83.04 407.70 2.50 -80.54 By element: Atomic # 1 Polarization: 28.98 SS G_CDS: -0.39 Total: 28.59 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: 6.51 Total: 8.92 kcal Atomic # 7 Polarization: -138.57 SS G_CDS: -5.48 Total: -144.05 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: -0.07 Total: -22.73 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 1.91 Total: 48.72 kcal Total: -83.04 2.50 -80.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164596373.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.393 kcal (2) G-P(sol) polarization free energy of solvation -83.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds