Wall clock time and date at job start Tue Mar 31 2020 19:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42902 * 114.00041 * 2 1 4 4 C 1.53003 * 109.47018 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46945 * 179.97438 * 4 3 2 6 6 C 1.35031 * 124.88692 * 124.97779 * 5 4 3 7 7 C 1.35361 * 107.23327 * 179.72093 * 6 5 4 8 8 C 1.41499 * 105.49852 * 0.41652 * 7 6 5 9 9 C 1.47715 * 126.51981 * 179.84293 * 8 7 6 10 10 O 1.21577 * 119.99273 * 359.70706 * 9 8 7 11 11 N 1.34766 * 120.00658 * 179.71241 * 9 8 7 12 12 C 1.46496 * 120.00402 * 179.97438 * 11 9 8 13 13 C 1.53007 * 109.47129 * 179.97438 * 12 11 9 14 14 C 1.53007 * 109.46868 * 175.02415 * 13 12 11 15 15 C 1.53000 * 115.54841 * 278.03435 * 14 13 12 16 16 N 1.46503 * 109.47113 * 303.90246 * 15 14 13 17 17 C 1.36936 * 119.99674 * 175.59731 * 16 15 14 18 18 H 1.07999 * 120.00600 * 359.97438 * 17 16 15 19 19 C 1.38816 * 119.99562 * 180.02562 * 17 16 15 20 20 N 1.31619 * 120.00505 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99760 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47410 * 359.97438 * 21 19 17 23 23 H 1.48507 * 109.47197 * 119.99525 * 21 19 17 24 24 H 1.48496 * 109.47036 * 239.99709 * 21 19 17 25 25 C 1.52993 * 117.49783 * 132.32899 * 14 13 12 26 26 C 1.52993 * 117.50023 * 63.70568 * 14 13 12 27 27 N 1.28469 * 124.88580 * 304.97136 * 5 4 3 28 28 H 1.08994 * 109.47062 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46626 * 300.00397 * 1 2 3 30 30 H 1.08997 * 109.46780 * 60.00147 * 1 2 3 31 31 H 1.09001 * 109.47549 * 60.00125 * 3 2 1 32 32 H 1.08997 * 109.47037 * 299.99687 * 3 2 1 33 33 H 1.08999 * 109.47000 * 60.00228 * 4 3 2 34 34 H 1.08997 * 109.46974 * 299.99742 * 4 3 2 35 35 H 1.08007 * 126.38395 * 359.97438 * 6 5 4 36 36 H 1.07997 * 127.25075 * 180.25237 * 7 6 5 37 37 H 0.97009 * 119.99677 * 359.97438 * 11 9 8 38 38 H 1.08995 * 109.47283 * 299.99479 * 12 11 9 39 39 H 1.09001 * 109.47418 * 60.00010 * 12 11 9 40 40 H 1.08996 * 109.47173 * 295.02357 * 13 12 11 41 41 H 1.09001 * 109.46727 * 55.02514 * 13 12 11 42 42 H 1.09000 * 109.47098 * 63.90269 * 15 14 13 43 43 H 1.08994 * 109.47274 * 183.90222 * 15 14 13 44 44 H 0.96994 * 120.00433 * 355.58948 * 16 15 14 45 45 H 0.96996 * 120.00217 * 180.02562 * 20 19 17 46 46 H 1.09004 * 117.50148 * 359.97438 * 25 14 13 47 47 H 1.09004 * 117.50120 * 145.01885 * 25 14 13 48 48 H 1.08995 * 117.49978 * 214.97858 * 26 14 13 49 49 H 1.09004 * 117.50148 * 359.97438 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 4.1314 2.5230 0.0000 6 6 5.0252 2.9708 0.9077 7 6 5.3397 4.2426 0.5670 8 6 4.5734 4.5250 -0.5885 9 6 4.5594 5.7933 -1.3456 10 8 5.2518 6.7248 -0.9838 11 7 3.7791 5.9179 -2.4374 12 6 3.7649 7.1759 -3.1879 13 6 2.8040 7.0523 -4.3722 14 6 2.6943 8.4029 -5.0830 15 6 1.7257 9.4044 -4.4508 16 7 0.3949 8.8002 -4.3505 17 6 -0.6204 9.4792 -3.7315 18 1 -0.4401 10.4599 -3.3167 19 6 -1.8813 8.9064 -3.6360 20 7 -2.1011 7.7109 -4.1410 21 14 -3.2662 9.8323 -2.7909 22 1 -2.7639 11.1451 -2.3118 23 1 -4.3768 10.0479 -3.7528 24 1 -3.7587 9.0398 -1.6357 25 6 2.8251 8.4116 -6.6073 26 6 3.9588 8.9607 -5.7390 27 7 3.8788 3.4393 -0.8642 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6887 1.8464 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 3.8575 0.6436 -0.8891 34 1 3.8567 0.6439 0.8909 35 1 5.4193 2.4162 1.7465 36 1 6.0283 4.9035 1.0724 37 1 3.2269 5.1745 -2.7262 38 1 3.4357 7.9845 -2.5355 39 1 4.7682 7.3911 -3.5555 40 1 3.1812 6.3044 -5.0696 41 1 1.8205 6.7502 -4.0122 42 1 2.0790 9.6726 -3.4551 43 1 1.6726 10.2994 -5.0706 44 1 0.2329 7.9193 -4.7228 45 1 -2.9822 7.3109 -4.0746 46 1 2.9897 7.4553 -7.1038 47 1 2.2209 9.1310 -7.1602 48 1 4.1006 10.0412 -5.7207 49 1 4.8692 8.3658 -5.6640 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166098560.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:57 Heat of formation + Delta-G solvation = 33.829875 kcal Electronic energy + Delta-G solvation = -28410.790872 eV Core-core repulsion = 24376.211295 eV Total energy + Delta-G solvation = -4034.579577 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.88054 -39.35607 -38.39727 -38.13747 -34.71688 -34.27013 -33.90408 -31.12715 -30.75865 -30.23729 -29.31571 -26.79465 -25.96233 -24.82019 -23.32080 -22.70888 -22.22099 -21.67705 -21.52713 -20.05318 -18.59835 -17.97637 -17.18082 -17.04111 -16.65466 -16.38251 -15.98651 -15.73535 -15.42952 -15.10071 -14.81779 -14.36932 -14.30654 -14.03986 -13.96080 -13.54885 -13.25700 -13.23686 -12.98363 -12.64933 -12.43922 -12.28429 -12.07919 -11.80792 -11.76955 -11.38146 -11.10634 -11.05938 -10.90633 -10.83702 -10.56757 -10.17451 -10.12865 -10.00349 -9.88513 -9.60598 -9.49743 -9.29606 -9.28730 -8.86853 -8.80440 -6.87079 -5.74042 -3.01353 1.44469 1.93395 2.01028 3.22458 3.39535 3.44596 3.48550 3.50715 3.52631 4.05606 4.10875 4.37984 4.52072 4.54889 4.63377 4.70113 4.94395 4.96248 5.04305 5.09707 5.15279 5.16496 5.21417 5.28078 5.32939 5.39581 5.45740 5.56949 5.59437 5.66462 5.75232 5.83655 5.95745 6.18077 6.21245 6.24005 6.27574 6.44960 6.47670 6.50127 6.55294 6.59540 6.68273 6.81417 6.88146 7.50365 7.73839 7.78831 8.31089 8.45272 9.56977 10.15661 10.51309 11.49011 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.007451 B = 0.002934 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3757.126648 B = 9539.823468 C =11946.087697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.391 6.391 3 C 0.048 3.952 4 C 0.126 3.874 5 N -0.283 5.283 6 C -0.017 4.017 7 C -0.178 4.178 8 C -0.009 4.009 9 C 0.602 3.398 10 O -0.536 6.536 11 N -0.712 5.712 12 C 0.126 3.874 13 C -0.092 4.092 14 C -0.118 4.118 15 C 0.187 3.813 16 N -0.728 5.728 17 C -0.235 4.235 18 H 0.070 0.930 19 C -0.014 4.014 20 N -0.934 5.934 21 Si 0.905 3.095 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.293 1.293 25 C -0.167 4.167 26 C -0.177 4.177 27 N -0.260 5.260 28 H 0.090 0.910 29 H 0.045 0.955 30 H 0.049 0.951 31 H 0.058 0.942 32 H 0.072 0.928 33 H 0.103 0.897 34 H 0.112 0.888 35 H 0.183 0.817 36 H 0.164 0.836 37 H 0.406 0.594 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.090 0.910 42 H 0.026 0.974 43 H 0.018 0.982 44 H 0.385 0.615 45 H 0.253 0.747 46 H 0.088 0.912 47 H 0.094 0.906 48 H 0.092 0.908 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.263 -16.181 7.172 22.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.310 6.310 3 C -0.030 4.030 4 C 0.005 3.995 5 N -0.072 5.072 6 C -0.159 4.159 7 C -0.206 4.206 8 C -0.170 4.170 9 C 0.386 3.614 10 O -0.411 6.411 11 N -0.363 5.363 12 C 0.003 3.997 13 C -0.130 4.130 14 C -0.119 4.119 15 C 0.060 3.940 16 N -0.372 5.372 17 C -0.366 4.366 18 H 0.088 0.912 19 C -0.210 4.210 20 N -0.583 5.583 21 Si 0.736 3.264 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.220 1.220 25 C -0.204 4.204 26 C -0.215 4.215 27 N -0.095 5.095 28 H 0.109 0.891 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.121 0.879 34 H 0.130 0.870 35 H 0.200 0.800 36 H 0.181 0.819 37 H 0.241 0.759 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.108 0.892 42 H 0.044 0.956 43 H 0.036 0.964 44 H 0.219 0.781 45 H 0.063 0.937 46 H 0.107 0.893 47 H 0.113 0.887 48 H 0.111 0.889 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 13.939 -16.084 6.756 22.330 hybrid contribution -0.883 0.275 0.817 1.234 sum 13.056 -15.809 7.573 21.857 Atomic orbital electron populations 1.22816 0.79526 1.03172 1.00845 1.87746 1.20914 1.26605 1.95688 1.22663 0.91930 0.85725 1.02685 1.21682 0.93261 0.78420 1.06131 1.45318 1.31300 1.11552 1.19069 1.22881 0.97871 0.96737 0.98373 1.21799 1.04469 0.95962 0.98338 1.22040 1.01341 0.94021 0.99622 1.16857 0.79890 0.84839 0.79855 1.90792 1.42732 1.39250 1.68337 1.45890 1.45031 1.17374 1.27989 1.21394 0.99703 0.85461 0.93142 1.21266 1.00706 0.95348 0.95676 1.21560 0.98880 0.97108 0.94320 1.20183 0.85006 0.92282 0.96547 1.42316 1.04902 1.20572 1.69393 1.19291 0.89307 0.99569 1.28449 0.91203 1.24701 0.97618 0.96913 1.01775 1.69668 1.21902 1.15667 1.51057 0.86144 0.82564 0.78890 0.78800 1.20558 1.21931 1.21987 1.22993 1.01779 1.02488 0.93112 1.22963 0.92535 1.00840 1.05170 1.73509 1.22447 0.97775 1.15810 0.89112 0.93683 0.93249 0.92370 0.90970 0.87869 0.86965 0.79969 0.81862 0.75872 0.90732 0.91631 0.91964 0.89191 0.95578 0.96448 0.78138 0.93704 0.89333 0.88723 0.88941 0.89180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.39 -3.35 10.70 -35.23 -0.38 -3.73 16 3 C 0.05 0.39 6.04 37.16 0.22 0.61 16 4 C 0.13 0.83 6.77 -4.04 -0.03 0.80 16 5 N -0.28 -2.69 3.41 -61.33 -0.21 -2.90 16 6 C -0.02 -0.14 11.40 -17.17 -0.20 -0.34 16 7 C -0.18 -2.01 10.81 -39.37 -0.43 -2.43 16 8 C -0.01 -0.13 7.13 -82.77 -0.59 -0.72 16 9 C 0.60 9.64 7.82 -12.39 -0.10 9.54 16 10 O -0.54 -10.04 16.93 5.30 0.09 -9.95 16 11 N -0.71 -10.57 5.55 -61.29 -0.34 -10.91 16 12 C 0.13 1.93 5.49 -4.04 -0.02 1.91 16 13 C -0.09 -1.43 5.20 -26.72 -0.14 -1.57 16 14 C -0.12 -1.93 1.65 -154.51 -0.25 -2.19 16 15 C 0.19 3.86 6.15 -4.04 -0.02 3.83 16 16 N -0.73 -18.41 5.23 -59.91 -0.31 -18.72 16 17 C -0.23 -6.63 9.99 -15.06 -0.15 -6.78 16 18 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 19 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 20 N -0.93 -28.15 13.06 55.49 0.72 -27.42 16 21 Si 0.90 22.64 29.55 -169.99 -5.02 17.62 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 24 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 25 C -0.17 -2.47 9.87 -26.74 -0.26 -2.73 16 26 C -0.18 -2.42 9.57 -26.74 -0.26 -2.68 16 27 N -0.26 -3.25 11.36 33.42 0.38 -2.87 16 28 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.69 8.08 -51.93 -0.42 0.27 16 33 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.11 0.43 8.04 -51.93 -0.42 0.02 16 35 H 0.18 0.76 8.06 -52.48 -0.42 0.34 16 36 H 0.16 1.66 8.06 -52.49 -0.42 1.24 16 37 H 0.41 5.53 8.20 -40.82 -0.33 5.19 16 38 H 0.07 1.31 7.96 -51.93 -0.41 0.89 16 39 H 0.07 0.96 7.72 -51.93 -0.40 0.56 16 40 H 0.06 0.85 7.93 -51.93 -0.41 0.43 16 41 H 0.09 1.64 6.94 -51.93 -0.36 1.28 16 42 H 0.03 0.56 7.96 -51.93 -0.41 0.14 16 43 H 0.02 0.37 8.10 -51.93 -0.42 -0.05 16 44 H 0.38 10.15 6.80 -40.82 -0.28 9.87 16 45 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 46 H 0.09 1.19 8.07 -51.93 -0.42 0.77 16 47 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 48 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 49 H 0.09 1.10 7.90 -51.93 -0.41 0.69 16 LS Contribution 414.47 15.07 6.25 6.25 Total: -1.00 -34.60 414.47 -8.08 -42.68 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: -8.05 Total: 11.87 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: -1.21 Total: -1.90 kcal Atomic # 7 Polarization: -63.07 SS G_CDS: 0.24 Total: -62.83 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: -0.29 Total: -13.68 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -34.60 -8.08 -42.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166098560.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.510 kcal (2) G-P(sol) polarization free energy of solvation -34.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds