Wall clock time and date at job start Tue Mar 31 2020 19:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42902 * 114.00041 * 2 1 4 4 C 1.53003 * 109.47018 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46945 * 179.97438 * 4 3 2 6 6 C 1.35031 * 124.88692 * 124.97779 * 5 4 3 7 7 C 1.35361 * 107.23327 * 179.72093 * 6 5 4 8 8 C 1.41499 * 105.49852 * 0.41652 * 7 6 5 9 9 C 1.47715 * 126.51981 * 179.84293 * 8 7 6 10 10 O 1.21577 * 119.99273 * 359.70706 * 9 8 7 11 11 N 1.34766 * 120.00658 * 179.71241 * 9 8 7 12 12 C 1.46496 * 120.00402 * 179.97438 * 11 9 8 13 13 C 1.53007 * 109.47129 * 179.97438 * 12 11 9 14 14 C 1.53007 * 109.46868 * 175.02415 * 13 12 11 15 15 C 1.53000 * 115.54841 * 278.03435 * 14 13 12 16 16 N 1.46503 * 109.47113 * 303.90246 * 15 14 13 17 17 C 1.36936 * 119.99674 * 175.59731 * 16 15 14 18 18 H 1.07999 * 120.00600 * 359.97438 * 17 16 15 19 19 C 1.38816 * 119.99562 * 180.02562 * 17 16 15 20 20 N 1.31619 * 120.00505 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99760 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47410 * 359.97438 * 21 19 17 23 23 H 1.48507 * 109.47197 * 119.99525 * 21 19 17 24 24 H 1.48496 * 109.47036 * 239.99709 * 21 19 17 25 25 C 1.52993 * 117.49783 * 132.32899 * 14 13 12 26 26 C 1.52993 * 117.50023 * 63.70568 * 14 13 12 27 27 N 1.28469 * 124.88580 * 304.97136 * 5 4 3 28 28 H 1.08994 * 109.47062 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46626 * 300.00397 * 1 2 3 30 30 H 1.08997 * 109.46780 * 60.00147 * 1 2 3 31 31 H 1.09001 * 109.47549 * 60.00125 * 3 2 1 32 32 H 1.08997 * 109.47037 * 299.99687 * 3 2 1 33 33 H 1.08999 * 109.47000 * 60.00228 * 4 3 2 34 34 H 1.08997 * 109.46974 * 299.99742 * 4 3 2 35 35 H 1.08007 * 126.38395 * 359.97438 * 6 5 4 36 36 H 1.07997 * 127.25075 * 180.25237 * 7 6 5 37 37 H 0.97009 * 119.99677 * 359.97438 * 11 9 8 38 38 H 1.08995 * 109.47283 * 299.99479 * 12 11 9 39 39 H 1.09001 * 109.47418 * 60.00010 * 12 11 9 40 40 H 1.08996 * 109.47173 * 295.02357 * 13 12 11 41 41 H 1.09001 * 109.46727 * 55.02514 * 13 12 11 42 42 H 1.09000 * 109.47098 * 63.90269 * 15 14 13 43 43 H 1.08994 * 109.47274 * 183.90222 * 15 14 13 44 44 H 0.96994 * 120.00433 * 355.58948 * 16 15 14 45 45 H 0.96996 * 120.00217 * 180.02562 * 20 19 17 46 46 H 1.09004 * 117.50148 * 359.97438 * 25 14 13 47 47 H 1.09004 * 117.50120 * 145.01885 * 25 14 13 48 48 H 1.08995 * 117.49978 * 214.97858 * 26 14 13 49 49 H 1.09004 * 117.50148 * 359.97438 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 4.1314 2.5230 0.0000 6 6 5.0252 2.9708 0.9077 7 6 5.3397 4.2426 0.5670 8 6 4.5734 4.5250 -0.5885 9 6 4.5594 5.7933 -1.3456 10 8 5.2518 6.7248 -0.9838 11 7 3.7791 5.9179 -2.4374 12 6 3.7649 7.1759 -3.1879 13 6 2.8040 7.0523 -4.3722 14 6 2.6943 8.4029 -5.0830 15 6 1.7257 9.4044 -4.4508 16 7 0.3949 8.8002 -4.3505 17 6 -0.6204 9.4792 -3.7315 18 1 -0.4401 10.4599 -3.3167 19 6 -1.8813 8.9064 -3.6360 20 7 -2.1011 7.7109 -4.1410 21 14 -3.2662 9.8323 -2.7909 22 1 -2.7639 11.1451 -2.3118 23 1 -4.3768 10.0479 -3.7528 24 1 -3.7587 9.0398 -1.6357 25 6 2.8251 8.4116 -6.6073 26 6 3.9588 8.9607 -5.7390 27 7 3.8788 3.4393 -0.8642 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6887 1.8464 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 3.8575 0.6436 -0.8891 34 1 3.8567 0.6439 0.8909 35 1 5.4193 2.4162 1.7465 36 1 6.0283 4.9035 1.0724 37 1 3.2269 5.1745 -2.7262 38 1 3.4357 7.9845 -2.5355 39 1 4.7682 7.3911 -3.5555 40 1 3.1812 6.3044 -5.0696 41 1 1.8205 6.7502 -4.0122 42 1 2.0790 9.6726 -3.4551 43 1 1.6726 10.2994 -5.0706 44 1 0.2329 7.9193 -4.7228 45 1 -2.9822 7.3109 -4.0746 46 1 2.9897 7.4553 -7.1038 47 1 2.2209 9.1310 -7.1602 48 1 4.1006 10.0412 -5.7207 49 1 4.8692 8.3658 -5.6640 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166098560.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:56 Heat of formation + Delta-G solvation = 9.353793 kcal Electronic energy + Delta-G solvation = -28411.852235 eV Core-core repulsion = 24376.211295 eV Total energy + Delta-G solvation = -4035.640940 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.69525 -40.60332 -39.49089 -39.00606 -36.12465 -35.75824 -34.99159 -32.79837 -32.00135 -31.24285 -30.23337 -27.86294 -27.38383 -25.81557 -24.62937 -24.32001 -23.26415 -22.71411 -22.42762 -21.13873 -19.93595 -19.10458 -18.82425 -17.97518 -17.47639 -17.11248 -17.01548 -16.84880 -16.66433 -16.45014 -16.09233 -15.67651 -15.51752 -15.24663 -14.94893 -14.81054 -14.69410 -14.24796 -14.22589 -13.94453 -13.91068 -13.17919 -13.03558 -13.02194 -12.83043 -12.66059 -12.56229 -12.36963 -12.27254 -12.09708 -11.94982 -11.92516 -11.86699 -11.32508 -11.10009 -10.92136 -10.81243 -10.54662 -10.39657 -10.16501 -10.00361 -8.97441 -7.95429 -5.22762 0.46660 1.15408 1.32103 1.45183 1.45491 1.55743 2.12209 2.33748 2.53655 2.74916 2.90222 3.36178 3.38013 3.72130 3.80749 3.82809 3.84123 3.96586 3.97920 4.07742 4.11127 4.19689 4.27534 4.39912 4.42382 4.45940 4.47999 4.59922 4.62204 4.64928 4.73409 4.76234 4.81649 4.84812 4.94021 4.98014 5.08154 5.17953 5.25628 5.29678 5.34492 5.37338 5.40153 5.48814 5.79985 5.97212 6.27191 6.38592 6.84661 7.11302 7.34259 8.10513 8.36317 9.28144 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.007451 B = 0.002934 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3757.126648 B = 9539.823468 C =11946.087697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.398 6.398 3 C 0.049 3.951 4 C 0.124 3.876 5 N -0.277 5.277 6 C 0.011 3.989 7 C -0.201 4.201 8 C -0.041 4.041 9 C 0.597 3.403 10 O -0.572 6.572 11 N -0.708 5.708 12 C 0.134 3.866 13 C -0.078 4.078 14 C -0.141 4.141 15 C 0.188 3.812 16 N -0.736 5.736 17 C -0.245 4.245 18 H 0.070 0.930 19 C -0.071 4.071 20 N -0.966 5.966 21 Si 0.969 3.031 22 H -0.269 1.269 23 H -0.291 1.291 24 H -0.293 1.293 25 C -0.163 4.163 26 C -0.150 4.150 27 N -0.278 5.278 28 H 0.108 0.892 29 H 0.049 0.951 30 H 0.041 0.959 31 H 0.056 0.944 32 H 0.050 0.950 33 H 0.111 0.889 34 H 0.151 0.849 35 H 0.233 0.767 36 H 0.167 0.833 37 H 0.412 0.588 38 H 0.046 0.954 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.056 0.944 42 H 0.016 0.984 43 H 0.016 0.984 44 H 0.377 0.623 45 H 0.251 0.749 46 H 0.107 0.893 47 H 0.084 0.916 48 H 0.099 0.901 49 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.512 -17.660 7.864 24.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.316 6.316 3 C -0.028 4.028 4 C 0.005 3.995 5 N -0.067 5.067 6 C -0.132 4.132 7 C -0.229 4.229 8 C -0.200 4.200 9 C 0.383 3.617 10 O -0.450 6.450 11 N -0.359 5.359 12 C 0.011 3.989 13 C -0.116 4.116 14 C -0.142 4.142 15 C 0.061 3.939 16 N -0.379 5.379 17 C -0.377 4.377 18 H 0.088 0.912 19 C -0.264 4.264 20 N -0.617 5.617 21 Si 0.798 3.202 22 H -0.194 1.194 23 H -0.218 1.218 24 H -0.221 1.221 25 C -0.200 4.200 26 C -0.187 4.187 27 N -0.115 5.115 28 H 0.126 0.874 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.129 0.871 34 H 0.169 0.831 35 H 0.250 0.750 36 H 0.185 0.815 37 H 0.248 0.752 38 H 0.064 0.936 39 H 0.096 0.904 40 H 0.106 0.894 41 H 0.075 0.925 42 H 0.034 0.966 43 H 0.034 0.966 44 H 0.209 0.791 45 H 0.060 0.940 46 H 0.125 0.875 47 H 0.103 0.897 48 H 0.117 0.883 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 15.198 -17.552 7.431 24.378 hybrid contribution -1.266 0.683 0.623 1.568 sum 13.932 -16.869 8.053 23.313 Atomic orbital electron populations 1.22960 0.78916 1.04342 1.00716 1.87728 1.21661 1.26598 1.95657 1.22603 0.93206 0.85513 1.01523 1.21972 0.91913 0.77132 1.08480 1.45660 1.30893 1.11792 1.18371 1.23551 0.95766 0.95642 0.98214 1.22038 1.05101 0.97637 0.98099 1.21871 1.03452 0.93730 1.00988 1.17247 0.79205 0.85452 0.79783 1.90750 1.44258 1.40723 1.69301 1.45875 1.44845 1.17283 1.27870 1.21256 1.00124 0.84926 0.92567 1.21099 0.98935 0.95566 0.95951 1.21381 1.00382 0.96841 0.95564 1.20238 0.83977 0.93320 0.96354 1.42461 1.06205 1.20233 1.68976 1.19648 0.90302 0.99684 1.28017 0.91186 1.25478 0.99948 0.97913 1.03038 1.69810 1.22204 1.17093 1.52554 0.85137 0.79460 0.78044 0.77529 1.19389 1.21774 1.22063 1.23056 1.02026 1.03308 0.91610 1.23058 0.92093 1.01591 1.01959 1.73453 1.22816 0.98124 1.17142 0.87354 0.93239 0.93997 0.92596 0.93196 0.87057 0.83118 0.75042 0.81498 0.75249 0.93584 0.90363 0.89438 0.92487 0.96603 0.96567 0.79067 0.94031 0.87492 0.89723 0.88272 0.86847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 113.37 1.25 1.60 16 2 O -0.40 -6.27 10.70 -148.98 -1.59 -7.87 16 3 C 0.05 0.75 6.04 71.98 0.44 1.19 16 4 C 0.12 1.31 6.77 86.38 0.58 1.90 16 5 N -0.28 -4.71 3.41 -347.95 -1.19 -5.89 16 6 C 0.01 0.15 11.40 83.54 0.95 1.10 16 7 C -0.20 -4.35 10.81 22.41 0.24 -4.11 16 8 C -0.04 -1.16 7.13 42.46 0.30 -0.85 16 9 C 0.60 19.84 7.82 86.75 0.68 20.52 16 10 O -0.57 -22.27 16.93 -3.96 -0.07 -22.34 16 11 N -0.71 -21.75 5.55 -466.10 -2.59 -24.34 16 12 C 0.13 4.21 5.49 86.38 0.47 4.69 16 13 C -0.08 -2.42 5.20 30.60 0.16 -2.26 16 14 C -0.14 -4.57 1.65 -52.18 -0.09 -4.65 16 15 C 0.19 7.89 6.15 86.38 0.53 8.42 16 16 N -0.74 -38.31 5.23 -343.45 -1.80 -40.11 16 17 C -0.24 -14.08 9.99 84.03 0.84 -13.24 16 18 H 0.07 3.94 7.83 -2.91 -0.02 3.92 16 19 C -0.07 -4.17 5.50 84.86 0.47 -3.70 16 20 N -0.97 -59.44 13.06 21.65 0.28 -59.16 16 21 Si 0.97 47.12 29.55 68.60 2.03 49.14 16 22 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 23 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 24 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 25 C -0.16 -4.57 9.87 30.59 0.30 -4.27 16 26 C -0.15 -3.75 9.57 30.59 0.29 -3.46 16 27 N -0.28 -6.87 11.36 -48.18 -0.55 -7.42 16 28 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.05 0.97 8.08 -2.39 -0.02 0.96 16 33 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.15 0.48 8.04 -2.39 -0.02 0.46 16 35 H 0.23 0.70 8.06 -2.91 -0.02 0.68 16 36 H 0.17 3.34 8.06 -2.91 -0.02 3.32 16 37 H 0.41 11.64 8.20 -92.70 -0.76 10.88 16 38 H 0.05 1.70 7.96 -2.39 -0.02 1.68 16 39 H 0.08 2.25 7.72 -2.39 -0.02 2.23 16 40 H 0.09 2.27 7.93 -2.39 -0.02 2.25 16 41 H 0.06 2.16 6.94 -2.39 -0.02 2.15 16 42 H 0.02 0.70 7.96 -2.39 -0.02 0.68 16 43 H 0.02 0.69 8.10 -2.39 -0.02 0.68 16 44 H 0.38 20.58 6.80 -92.71 -0.63 19.95 16 45 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 46 H 0.11 2.61 8.07 -2.38 -0.02 2.59 16 47 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 48 H 0.10 2.38 8.14 -2.39 -0.02 2.37 16 49 H 0.11 2.38 7.90 -2.39 -0.02 2.36 16 Total: -1.00 -77.36 414.47 1.52 -75.84 By element: Atomic # 1 Polarization: 39.73 SS G_CDS: -0.43 Total: 39.29 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: 7.42 Total: 2.86 kcal Atomic # 7 Polarization: -131.09 SS G_CDS: -5.83 Total: -136.92 kcal Atomic # 8 Polarization: -28.55 SS G_CDS: -1.66 Total: -30.21 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 2.03 Total: 49.14 kcal Total: -77.36 1.52 -75.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166098560.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.189 kcal (2) G-P(sol) polarization free energy of solvation -77.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds