Wall clock time and date at job start Tue Mar 31 2020 19:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52994 * 109.47324 * 2 1 4 4 C 1.50706 * 109.47171 * 120.00030 * 2 1 3 5 5 N 1.31078 * 126.65674 * 300.04237 * 4 2 1 6 6 N 1.28838 * 107.98555 * 179.97438 * 5 4 2 7 7 N 1.28736 * 109.39977 * 359.73518 * 6 5 4 8 8 N 1.29018 * 108.80895 * 0.43215 * 7 6 5 9 9 C 1.46497 * 126.43684 * 179.83193 * 8 7 6 10 10 C 1.50704 * 109.47293 * 269.69590 * 9 8 7 11 11 O 1.21279 * 119.99876 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99601 * 179.97438 * 10 9 8 13 13 C 1.46509 * 119.99598 * 179.72586 * 12 10 9 14 14 C 1.52998 * 109.47176 * 180.02562 * 13 12 10 15 15 C 1.52998 * 109.47369 * 175.02439 * 14 13 12 16 16 C 1.53007 * 115.54870 * 278.03478 * 15 14 13 17 17 N 1.46497 * 109.47182 * 303.90041 * 16 15 14 18 18 C 1.36937 * 120.00446 * 175.59709 * 17 16 15 19 19 H 1.07998 * 119.99425 * 359.97438 * 18 17 16 20 20 C 1.38803 * 120.00442 * 179.97438 * 18 17 16 21 21 N 1.31620 * 119.99983 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00195 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47108 * 59.99552 * 22 20 18 24 24 H 1.48496 * 109.47257 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.46747 * 299.99584 * 22 20 18 26 26 C 1.52994 * 117.50087 * 132.32418 * 15 14 13 27 27 C 1.52998 * 117.49589 * 63.70027 * 15 14 13 28 28 H 1.09005 * 109.47451 * 300.00461 * 1 2 3 29 29 H 1.08997 * 109.47108 * 59.99967 * 1 2 3 30 30 H 1.09004 * 109.47607 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47451 * 239.99539 * 2 1 3 32 32 H 1.09005 * 109.47348 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47094 * 299.99511 * 3 2 1 34 34 H 1.08997 * 109.47434 * 59.99664 * 3 2 1 35 35 H 1.09003 * 109.47314 * 149.69693 * 9 8 7 36 36 H 1.09001 * 109.47296 * 29.69658 * 9 8 7 37 37 H 0.96998 * 120.00514 * 0.02562 * 12 10 9 38 38 H 1.09003 * 109.46826 * 299.99905 * 13 12 10 39 39 H 1.08995 * 109.47138 * 60.00116 * 13 12 10 40 40 H 1.09000 * 109.47515 * 295.02829 * 14 13 12 41 41 H 1.09008 * 109.46857 * 55.02237 * 14 13 12 42 42 H 1.09004 * 109.46856 * 63.89851 * 16 15 14 43 43 H 1.08991 * 109.46852 * 183.89560 * 16 15 14 44 44 H 0.97002 * 119.99802 * 355.58990 * 17 16 15 45 45 H 0.97006 * 120.00252 * 180.02562 * 21 20 18 46 46 H 1.09002 * 117.49982 * 0.02562 * 26 15 14 47 47 H 1.09004 * 117.49943 * 145.02139 * 26 15 14 48 48 H 1.09004 * 117.49766 * 214.97936 * 27 15 14 49 49 H 1.08997 * 117.50178 * 0.02562 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7968 -0.3788 2.4766 6 7 2.3979 -1.2293 3.2350 7 7 3.0061 -2.0980 2.5052 8 7 2.8092 -1.8090 1.2633 9 6 3.3288 -2.5422 0.1063 10 6 4.6669 -1.9731 -0.2896 11 8 5.1402 -1.0466 0.3336 12 7 5.3380 -2.4945 -1.3356 13 6 6.6361 -1.9374 -1.7243 14 6 7.1792 -2.7040 -2.9318 15 6 8.4729 -2.0451 -3.4145 16 6 8.2939 -0.8238 -4.3187 17 7 7.4751 -1.1897 -5.4771 18 6 7.1041 -0.2323 -6.3832 19 1 7.4148 0.7925 -6.2435 20 6 6.3287 -0.5791 -7.4810 21 7 5.9505 -1.8282 -7.6514 22 14 5.8221 0.7271 -8.7167 23 1 7.0354 1.3408 -9.3138 24 1 5.0045 0.1040 -9.7884 25 1 5.0240 1.7746 -8.0304 26 6 9.6711 -2.9566 -3.6867 27 6 9.6662 -2.0463 -2.4570 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9562 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 2.6325 -2.4468 -0.7269 36 1 3.4438 -3.5948 0.3650 37 1 4.9596 -3.2358 -1.8339 38 1 6.5165 -0.8859 -1.9857 39 1 7.3341 -2.0278 -0.8921 40 1 7.3819 -3.7361 -2.6458 41 1 6.4417 -2.6877 -3.7343 42 1 7.7996 -0.0283 -3.7610 43 1 9.2698 -0.4772 -4.6584 44 1 7.1958 -2.1101 -5.6023 45 1 5.4089 -2.0706 -8.4189 46 1 9.5377 -4.0259 -3.5223 47 1 10.3322 -2.6865 -4.5103 48 1 10.3241 -1.1773 -2.4715 49 1 9.5298 -2.5170 -1.4833 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167414470.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:15 Heat of formation + Delta-G solvation = 106.826336 kcal Electronic energy + Delta-G solvation = -29143.295481 eV Core-core repulsion = 25144.174020 eV Total energy + Delta-G solvation = -3999.121462 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -44.37483 -40.13069 -38.42192 -36.46142 -35.68939 -35.09255 -34.03184 -31.74548 -30.94602 -30.70327 -28.83070 -27.52453 -26.06031 -24.64877 -24.15327 -23.11163 -22.79513 -21.93745 -21.27354 -20.75913 -18.87953 -18.05306 -17.94865 -17.17800 -16.49073 -16.30848 -15.97153 -15.63377 -15.24225 -14.92159 -14.62244 -14.48096 -14.09258 -13.84008 -13.57886 -13.45702 -13.21145 -12.98439 -12.77985 -12.51180 -12.45338 -12.34683 -12.05650 -11.97722 -11.66838 -11.58210 -11.55248 -11.50600 -11.24194 -11.13913 -11.04068 -10.89702 -10.73637 -10.33185 -10.23213 -10.08581 -10.01752 -9.74194 -9.43667 -9.33328 -8.92283 -6.99186 -5.84698 -3.12679 0.98002 1.55719 2.08633 2.11277 2.77137 3.38087 3.43110 3.43670 3.59979 3.83137 3.94193 4.11026 4.15962 4.33511 4.53690 4.62691 4.73463 4.87230 4.89159 4.96334 5.03260 5.18459 5.21219 5.32426 5.38845 5.40849 5.49039 5.49777 5.53142 5.54289 5.58046 5.61003 5.81852 5.83513 5.88208 5.95606 5.98536 6.04305 6.10739 6.18793 6.32644 6.35603 6.45180 6.66156 6.73797 7.07239 7.62774 7.74071 8.34620 8.45078 9.46383 10.03561 10.39364 11.38017 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.010077 B = 0.002866 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2777.876738 B = 9766.452823 C =11810.990561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.013 4.013 3 C -0.144 4.144 4 C 0.206 3.794 5 N -0.301 5.301 6 N -0.074 5.074 7 N -0.088 5.088 8 N -0.295 5.295 9 C 0.091 3.909 10 C 0.499 3.501 11 O -0.520 6.520 12 N -0.714 5.714 13 C 0.126 3.874 14 C -0.092 4.092 15 C -0.119 4.119 16 C 0.188 3.812 17 N -0.727 5.727 18 C -0.239 4.239 19 H 0.069 0.931 20 C -0.012 4.012 21 N -0.934 5.934 22 Si 0.906 3.094 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C -0.165 4.165 27 C -0.178 4.178 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.057 0.943 31 H 0.092 0.908 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.141 0.859 36 H 0.143 0.857 37 H 0.405 0.595 38 H 0.076 0.924 39 H 0.067 0.933 40 H 0.063 0.937 41 H 0.091 0.909 42 H 0.025 0.975 43 H 0.018 0.982 44 H 0.384 0.616 45 H 0.255 0.745 46 H 0.089 0.911 47 H 0.095 0.905 48 H 0.093 0.907 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.483 -4.283 13.388 15.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.034 4.034 3 C -0.203 4.203 4 C -0.072 4.072 5 N -0.149 5.149 6 N -0.068 5.068 7 N -0.073 5.073 8 N -0.095 5.095 9 C -0.035 4.035 10 C 0.281 3.719 11 O -0.395 6.395 12 N -0.366 5.366 13 C 0.003 3.997 14 C -0.130 4.130 15 C -0.120 4.120 16 C 0.060 3.940 17 N -0.372 5.372 18 C -0.370 4.370 19 H 0.087 0.913 20 C -0.208 4.208 21 N -0.583 5.583 22 Si 0.737 3.263 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.202 4.202 27 C -0.216 4.216 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.076 0.924 31 H 0.110 0.890 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.159 0.841 36 H 0.161 0.839 37 H 0.240 0.760 38 H 0.095 0.905 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.110 0.890 42 H 0.043 0.957 43 H 0.036 0.964 44 H 0.218 0.782 45 H 0.065 0.935 46 H 0.107 0.893 47 H 0.114 0.886 48 H 0.111 0.889 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.027 -3.620 15.195 16.743 hybrid contribution -0.323 -0.145 -2.096 2.126 sum -6.351 -3.764 13.099 15.036 Atomic orbital electron populations 1.21852 0.91868 1.02654 1.03797 1.19832 0.97376 0.96745 0.89479 1.21832 1.02063 0.92906 1.03470 1.26134 0.94495 0.88555 0.98026 1.74957 1.20687 1.20922 0.98343 1.78588 1.06881 0.98858 1.22446 1.78866 1.19280 1.21971 0.87219 1.47837 1.33943 1.20938 1.06806 1.22015 0.96319 0.98686 0.86526 1.20227 0.86198 0.84084 0.81419 1.90831 1.68266 1.27905 1.52506 1.45900 1.22080 1.37111 1.31526 1.21461 0.82176 0.98959 0.97069 1.21272 0.97027 0.97655 0.97032 1.21558 0.89047 1.00118 1.01314 1.20175 0.94501 0.91728 0.87581 1.42292 1.61255 1.09252 1.24371 1.19186 1.25893 0.90388 1.01552 0.91325 1.24697 1.00959 0.96305 0.98850 1.69641 1.41804 1.15920 1.30942 0.86290 0.78209 0.80757 0.81073 1.21285 1.21676 1.21269 1.23000 1.01258 0.96539 0.99415 1.22976 1.01666 1.02535 0.94382 0.90973 0.90595 0.92412 0.88966 0.91820 0.90659 0.91119 0.84099 0.83892 0.76021 0.90540 0.91440 0.91817 0.89014 0.95700 0.96413 0.78165 0.93504 0.89262 0.88629 0.88885 0.89219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 9.17 37.15 0.34 -0.63 16 2 C -0.01 -0.11 3.26 -91.78 -0.30 -0.41 16 3 C -0.14 -1.32 9.17 37.15 0.34 -0.98 16 4 C 0.21 2.40 6.64 -155.43 -1.03 1.37 16 5 N -0.30 -4.30 12.36 32.70 0.40 -3.90 16 6 N -0.07 -1.15 13.43 60.35 0.81 -0.34 16 7 N -0.09 -1.24 13.29 60.35 0.80 -0.44 16 8 N -0.29 -3.34 2.83 -59.44 -0.17 -3.51 16 9 C 0.09 0.64 6.57 -5.19 -0.03 0.61 16 10 C 0.50 5.33 7.90 -10.98 -0.09 5.24 16 11 O -0.52 -8.17 16.43 5.56 0.09 -8.08 16 12 N -0.71 -6.67 5.56 -60.29 -0.33 -7.00 16 13 C 0.13 1.51 5.49 -4.04 -0.02 1.49 16 14 C -0.09 -1.16 5.20 -26.73 -0.14 -1.29 16 15 C -0.12 -1.73 1.65 -154.51 -0.25 -1.98 16 16 C 0.19 3.54 6.15 -4.04 -0.02 3.52 16 17 N -0.73 -17.06 5.23 -59.91 -0.31 -17.37 16 18 C -0.24 -6.37 9.99 -15.06 -0.15 -6.52 16 19 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 20 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 21 N -0.93 -26.63 13.06 55.49 0.72 -25.91 16 22 Si 0.91 21.52 29.55 -169.99 -5.02 16.50 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 26 C -0.17 -2.20 9.87 -26.73 -0.26 -2.46 16 27 C -0.18 -2.18 9.57 -26.73 -0.26 -2.43 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.09 0.62 6.85 -51.93 -0.36 0.27 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.14 0.47 7.13 -51.93 -0.37 0.10 16 36 H 0.14 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.41 2.53 8.47 -40.82 -0.35 2.18 16 38 H 0.08 1.11 7.96 -51.93 -0.41 0.70 16 39 H 0.07 0.82 7.72 -51.93 -0.40 0.42 16 40 H 0.06 0.67 7.93 -51.93 -0.41 0.26 16 41 H 0.09 1.36 6.94 -51.92 -0.36 1.00 16 42 H 0.03 0.49 7.96 -51.93 -0.41 0.07 16 43 H 0.02 0.35 8.10 -51.93 -0.42 -0.07 16 44 H 0.38 9.36 6.80 -40.82 -0.28 9.09 16 45 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 46 H 0.09 1.06 8.07 -51.93 -0.42 0.64 16 47 H 0.10 1.37 8.14 -51.93 -0.42 0.94 16 48 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 49 H 0.09 0.97 7.90 -51.93 -0.41 0.56 16 LS Contribution 410.44 15.07 6.19 6.19 Total: -1.00 -35.36 410.44 -6.75 -42.11 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -7.95 Total: 6.67 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: -1.98 Total: -4.91 kcal Atomic # 7 Polarization: -60.40 SS G_CDS: 1.92 Total: -58.47 kcal Atomic # 8 Polarization: -8.17 SS G_CDS: 0.09 Total: -8.08 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -35.36 -6.75 -42.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167414470.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.936 kcal (2) G-P(sol) polarization free energy of solvation -35.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds