Wall clock time and date at job start Tue Mar 31 2020 19:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52994 * 109.47324 * 2 1 4 4 C 1.50706 * 109.47171 * 120.00030 * 2 1 3 5 5 N 1.31078 * 126.65674 * 300.04237 * 4 2 1 6 6 N 1.28838 * 107.98555 * 179.97438 * 5 4 2 7 7 N 1.28736 * 109.39977 * 359.73518 * 6 5 4 8 8 N 1.29018 * 108.80895 * 0.43215 * 7 6 5 9 9 C 1.46497 * 126.43684 * 179.83193 * 8 7 6 10 10 C 1.50704 * 109.47293 * 269.69590 * 9 8 7 11 11 O 1.21279 * 119.99876 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99601 * 179.97438 * 10 9 8 13 13 C 1.46509 * 119.99598 * 179.72586 * 12 10 9 14 14 C 1.52998 * 109.47176 * 180.02562 * 13 12 10 15 15 C 1.52998 * 109.47369 * 175.02439 * 14 13 12 16 16 C 1.53007 * 115.54870 * 278.03478 * 15 14 13 17 17 N 1.46497 * 109.47182 * 303.90041 * 16 15 14 18 18 C 1.36937 * 120.00446 * 175.59709 * 17 16 15 19 19 H 1.07998 * 119.99425 * 359.97438 * 18 17 16 20 20 C 1.38803 * 120.00442 * 179.97438 * 18 17 16 21 21 N 1.31620 * 119.99983 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00195 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47108 * 59.99552 * 22 20 18 24 24 H 1.48496 * 109.47257 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.46747 * 299.99584 * 22 20 18 26 26 C 1.52994 * 117.50087 * 132.32418 * 15 14 13 27 27 C 1.52998 * 117.49589 * 63.70027 * 15 14 13 28 28 H 1.09005 * 109.47451 * 300.00461 * 1 2 3 29 29 H 1.08997 * 109.47108 * 59.99967 * 1 2 3 30 30 H 1.09004 * 109.47607 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47451 * 239.99539 * 2 1 3 32 32 H 1.09005 * 109.47348 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47094 * 299.99511 * 3 2 1 34 34 H 1.08997 * 109.47434 * 59.99664 * 3 2 1 35 35 H 1.09003 * 109.47314 * 149.69693 * 9 8 7 36 36 H 1.09001 * 109.47296 * 29.69658 * 9 8 7 37 37 H 0.96998 * 120.00514 * 0.02562 * 12 10 9 38 38 H 1.09003 * 109.46826 * 299.99905 * 13 12 10 39 39 H 1.08995 * 109.47138 * 60.00116 * 13 12 10 40 40 H 1.09000 * 109.47515 * 295.02829 * 14 13 12 41 41 H 1.09008 * 109.46857 * 55.02237 * 14 13 12 42 42 H 1.09004 * 109.46856 * 63.89851 * 16 15 14 43 43 H 1.08991 * 109.46852 * 183.89560 * 16 15 14 44 44 H 0.97002 * 119.99802 * 355.58990 * 17 16 15 45 45 H 0.97006 * 120.00252 * 180.02562 * 21 20 18 46 46 H 1.09002 * 117.49982 * 0.02562 * 26 15 14 47 47 H 1.09004 * 117.49943 * 145.02139 * 26 15 14 48 48 H 1.09004 * 117.49766 * 214.97936 * 27 15 14 49 49 H 1.08997 * 117.50178 * 0.02562 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7968 -0.3788 2.4766 6 7 2.3979 -1.2293 3.2350 7 7 3.0061 -2.0980 2.5052 8 7 2.8092 -1.8090 1.2633 9 6 3.3288 -2.5422 0.1063 10 6 4.6669 -1.9731 -0.2896 11 8 5.1402 -1.0466 0.3336 12 7 5.3380 -2.4945 -1.3356 13 6 6.6361 -1.9374 -1.7243 14 6 7.1792 -2.7040 -2.9318 15 6 8.4729 -2.0451 -3.4145 16 6 8.2939 -0.8238 -4.3187 17 7 7.4751 -1.1897 -5.4771 18 6 7.1041 -0.2323 -6.3832 19 1 7.4148 0.7925 -6.2435 20 6 6.3287 -0.5791 -7.4810 21 7 5.9505 -1.8282 -7.6514 22 14 5.8221 0.7271 -8.7167 23 1 7.0354 1.3408 -9.3138 24 1 5.0045 0.1040 -9.7884 25 1 5.0240 1.7746 -8.0304 26 6 9.6711 -2.9566 -3.6867 27 6 9.6662 -2.0463 -2.4570 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9562 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 2.6325 -2.4468 -0.7269 36 1 3.4438 -3.5948 0.3650 37 1 4.9596 -3.2358 -1.8339 38 1 6.5165 -0.8859 -1.9857 39 1 7.3341 -2.0278 -0.8921 40 1 7.3819 -3.7361 -2.6458 41 1 6.4417 -2.6877 -3.7343 42 1 7.7996 -0.0283 -3.7610 43 1 9.2698 -0.4772 -4.6584 44 1 7.1958 -2.1101 -5.6023 45 1 5.4089 -2.0706 -8.4189 46 1 9.5377 -4.0259 -3.5223 47 1 10.3322 -2.6865 -4.5103 48 1 10.3241 -1.1773 -2.4715 49 1 9.5298 -2.5170 -1.4833 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167414470.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:14 Heat of formation + Delta-G solvation = 81.785305 kcal Electronic energy + Delta-G solvation = -29144.381342 eV Core-core repulsion = 25144.174020 eV Total energy + Delta-G solvation = -4000.207322 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -45.31990 -41.04153 -39.57548 -37.21601 -36.56778 -36.13385 -35.78538 -32.77738 -32.64146 -31.72093 -29.68165 -28.15156 -27.78020 -25.51767 -25.17438 -24.59971 -24.05165 -22.99887 -22.12252 -21.56460 -20.06663 -19.16170 -18.85327 -18.79325 -17.45109 -17.14215 -16.86018 -16.74098 -16.44877 -16.14328 -15.75534 -15.55667 -15.20568 -14.98951 -14.79612 -14.49656 -14.26502 -14.23515 -13.92778 -13.74390 -13.24058 -13.15851 -13.12934 -13.00800 -12.75751 -12.71813 -12.57498 -12.52148 -12.33929 -12.31242 -12.28985 -12.14164 -11.93296 -11.91602 -11.84863 -11.28122 -11.09304 -11.00066 -10.90027 -10.54603 -10.25166 -8.95040 -7.92722 -5.19806 0.06281 0.80780 1.10570 1.28586 1.49481 1.50758 1.56931 1.97371 2.56225 2.84197 2.88943 3.12468 3.38154 3.40962 3.57975 3.83081 3.84221 3.88244 3.97308 3.98020 4.02223 4.09454 4.16962 4.25476 4.34917 4.39174 4.47426 4.61148 4.64037 4.74103 4.79191 4.83639 4.87152 4.91515 4.93597 4.97514 5.07685 5.10772 5.15447 5.23523 5.26895 5.32192 5.32996 5.33331 5.39405 5.51474 6.29852 6.31178 6.98264 7.37819 7.45993 8.12615 8.39786 9.29907 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.010077 B = 0.002866 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2777.876738 B = 9766.452823 C =11810.990561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.013 4.013 3 C -0.143 4.143 4 C 0.209 3.791 5 N -0.327 5.327 6 N -0.106 5.106 7 N -0.101 5.101 8 N -0.291 5.291 9 C 0.087 3.913 10 C 0.499 3.501 11 O -0.576 6.576 12 N -0.700 5.700 13 C 0.135 3.865 14 C -0.078 4.078 15 C -0.138 4.138 16 C 0.188 3.812 17 N -0.733 5.733 18 C -0.248 4.248 19 H 0.067 0.933 20 C -0.065 4.065 21 N -0.962 5.962 22 Si 0.965 3.035 23 H -0.284 1.284 24 H -0.293 1.293 25 H -0.279 1.279 26 C -0.163 4.163 27 C -0.156 4.156 28 H 0.058 0.942 29 H 0.095 0.905 30 H 0.067 0.933 31 H 0.116 0.884 32 H 0.036 0.964 33 H 0.096 0.904 34 H 0.061 0.939 35 H 0.187 0.813 36 H 0.181 0.819 37 H 0.423 0.577 38 H 0.045 0.955 39 H 0.069 0.931 40 H 0.092 0.908 41 H 0.067 0.933 42 H 0.016 0.984 43 H 0.009 0.991 44 H 0.379 0.621 45 H 0.252 0.748 46 H 0.110 0.890 47 H 0.081 0.919 48 H 0.093 0.907 49 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.076 -5.504 12.785 15.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.034 4.034 3 C -0.201 4.201 4 C -0.069 4.069 5 N -0.176 5.176 6 N -0.100 5.100 7 N -0.087 5.087 8 N -0.092 5.092 9 C -0.037 4.037 10 C 0.283 3.717 11 O -0.456 6.456 12 N -0.353 5.353 13 C 0.012 3.988 14 C -0.116 4.116 15 C -0.139 4.139 16 C 0.062 3.938 17 N -0.376 5.376 18 C -0.379 4.379 19 H 0.085 0.915 20 C -0.258 4.258 21 N -0.612 5.612 22 Si 0.795 3.205 23 H -0.211 1.211 24 H -0.219 1.219 25 H -0.205 1.205 26 C -0.201 4.201 27 C -0.193 4.193 28 H 0.077 0.923 29 H 0.114 0.886 30 H 0.086 0.914 31 H 0.134 0.866 32 H 0.056 0.944 33 H 0.114 0.886 34 H 0.080 0.920 35 H 0.204 0.796 36 H 0.198 0.802 37 H 0.261 0.739 38 H 0.063 0.937 39 H 0.087 0.913 40 H 0.111 0.889 41 H 0.086 0.914 42 H 0.034 0.966 43 H 0.027 0.973 44 H 0.212 0.788 45 H 0.061 0.939 46 H 0.128 0.872 47 H 0.099 0.901 48 H 0.111 0.889 49 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -6.609 -4.864 14.586 16.736 hybrid contribution -0.042 0.273 -1.944 1.963 sum -6.651 -4.591 12.642 15.004 Atomic orbital electron populations 1.21841 0.90244 1.03449 1.04139 1.20083 0.98604 0.95916 0.88846 1.21815 1.00307 0.93883 1.04092 1.26685 0.93703 0.88343 0.98163 1.74869 1.21616 1.21467 0.99656 1.78544 1.08095 0.99769 1.23593 1.78753 1.19332 1.22121 0.88458 1.48090 1.33300 1.20951 1.06857 1.22528 0.94916 0.99696 0.86569 1.20791 0.87094 0.83125 0.80676 1.90822 1.69873 1.30505 1.54366 1.45728 1.21142 1.37172 1.31238 1.21191 0.83476 0.97301 0.96869 1.21123 0.95334 0.98987 0.96129 1.21421 0.90948 0.99261 1.02258 1.20204 0.92905 0.93851 0.86866 1.42397 1.61645 1.08439 1.25136 1.19517 1.25338 0.90970 1.02123 0.91512 1.25390 1.01610 0.98143 1.00651 1.69769 1.42681 1.17395 1.31381 0.85346 0.77737 0.78623 0.78840 1.21057 1.21871 1.20508 1.23057 0.99787 0.97662 0.99547 1.23040 0.99314 1.02157 0.94838 0.92254 0.88623 0.91405 0.86582 0.94433 0.88569 0.92001 0.79606 0.80200 0.73878 0.93697 0.91276 0.88916 0.91402 0.96584 0.97292 0.78830 0.93924 0.87173 0.90089 0.88891 0.86943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.17 71.98 0.66 -0.90 16 2 C -0.01 -0.20 3.26 -11.54 -0.04 -0.23 16 3 C -0.14 -2.54 9.17 71.98 0.66 -1.88 16 4 C 0.21 4.69 6.64 138.14 0.92 5.61 16 5 N -0.33 -9.49 12.36 -50.45 -0.62 -10.11 16 6 N -0.11 -3.38 13.43 37.01 0.50 -2.88 16 7 N -0.10 -2.80 13.29 37.02 0.49 -2.31 16 8 N -0.29 -6.17 2.83 -341.97 -0.97 -7.14 16 9 C 0.09 0.96 6.57 85.64 0.56 1.52 16 10 C 0.50 9.77 7.90 87.66 0.69 10.47 16 11 O -0.58 -18.05 16.43 -3.03 -0.05 -18.10 16 12 N -0.70 -11.57 5.56 -463.04 -2.57 -14.14 16 13 C 0.14 3.09 5.49 86.38 0.47 3.57 16 14 C -0.08 -1.82 5.20 30.59 0.16 -1.67 16 15 C -0.14 -3.84 1.65 -52.18 -0.09 -3.93 16 16 C 0.19 7.17 6.15 86.38 0.53 7.70 16 17 N -0.73 -34.67 5.23 -343.46 -1.80 -36.47 16 18 C -0.25 -13.25 9.99 84.03 0.84 -12.41 16 19 H 0.07 3.52 7.83 -2.91 -0.02 3.49 16 20 C -0.06 -3.54 5.50 84.86 0.47 -3.07 16 21 N -0.96 -54.89 13.06 21.65 0.28 -54.60 16 22 Si 0.97 44.06 29.55 68.60 2.03 46.09 16 23 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 24 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 25 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 26 C -0.16 -4.03 9.87 30.59 0.30 -3.73 16 27 C -0.16 -3.48 9.57 30.59 0.29 -3.18 16 28 H 0.06 0.83 8.14 -2.38 -0.02 0.82 16 29 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 31 H 0.12 1.19 6.85 -2.38 -0.02 1.18 16 32 H 0.04 0.86 8.14 -2.38 -0.02 0.84 16 33 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.19 0.36 7.13 -2.39 -0.02 0.35 16 36 H 0.18 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.42 3.94 8.47 -92.71 -0.79 3.15 16 38 H 0.04 1.32 7.96 -2.39 -0.02 1.30 16 39 H 0.07 1.58 7.72 -2.39 -0.02 1.56 16 40 H 0.09 1.65 7.93 -2.39 -0.02 1.63 16 41 H 0.07 1.95 6.94 -2.38 -0.02 1.93 16 42 H 0.02 0.64 7.96 -2.39 -0.02 0.62 16 43 H 0.01 0.37 8.10 -2.39 -0.02 0.35 16 44 H 0.38 18.59 6.80 -92.71 -0.63 17.96 16 45 H 0.25 13.99 8.31 -92.70 -0.77 13.22 16 46 H 0.11 2.26 8.07 -2.39 -0.02 2.24 16 47 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 48 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 49 H 0.11 2.05 7.90 -2.39 -0.02 2.03 16 Total: -1.00 -79.99 410.44 3.28 -76.71 By element: Atomic # 1 Polarization: 25.55 SS G_CDS: -0.45 Total: 25.10 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: 6.44 Total: -2.15 kcal Atomic # 7 Polarization: -122.96 SS G_CDS: -4.69 Total: -127.65 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: -0.05 Total: -18.10 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -79.99 3.28 -76.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167414470.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.493 kcal (2) G-P(sol) polarization free energy of solvation -79.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds