Wall clock time and date at job start Tue Mar 31 2020 19:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42904 * 113.99927 * 2 1 4 4 C 1.52995 * 109.47411 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47429 * 179.97438 * 4 3 2 6 6 C 1.34256 * 125.75089 * 124.99895 * 5 4 3 7 7 C 1.38050 * 107.41337 * 180.02562 * 6 5 4 8 8 C 1.47425 * 126.41212 * 179.97438 * 7 6 5 9 9 O 1.21609 * 120.00429 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99752 * 179.97438 * 8 7 6 11 11 C 1.46505 * 119.99848 * 185.14834 * 10 8 7 12 12 C 1.52999 * 109.47009 * 184.89163 * 11 10 8 13 13 C 1.53004 * 109.47273 * 184.89527 * 12 11 10 14 14 C 1.53002 * 115.55343 * 294.51793 * 13 12 11 15 15 N 1.46494 * 109.46768 * 279.61465 * 14 13 12 16 16 C 1.36939 * 119.99892 * 175.04191 * 15 14 13 17 17 H 1.07996 * 119.99770 * 4.51799 * 16 15 14 18 18 C 1.38807 * 119.99939 * 184.79124 * 16 15 14 19 19 N 1.31620 * 120.00029 * 173.90418 * 18 16 15 20 20 Si 1.86803 * 120.00115 * 353.90492 * 18 16 15 21 21 H 1.48503 * 109.47131 * 94.13488 * 20 18 16 22 22 H 1.48501 * 109.46900 * 214.13113 * 20 18 16 23 23 H 1.48493 * 109.47189 * 334.13086 * 20 18 16 24 24 C 1.53003 * 117.51335 * 80.21306 * 13 12 11 25 25 C 1.53002 * 117.49651 * 148.84158 * 13 12 11 26 26 C 1.41291 * 107.17206 * 0.24366 * 7 6 5 27 27 N 1.30455 * 108.01992 * 359.58935 * 26 7 6 28 28 H 1.08999 * 109.47106 * 60.00053 * 1 2 3 29 29 H 1.09004 * 109.46869 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47105 * 299.99638 * 1 2 3 31 31 H 1.09006 * 109.47004 * 59.99732 * 3 2 1 32 32 H 1.09005 * 109.47234 * 300.00409 * 3 2 1 33 33 H 1.09002 * 109.46814 * 59.99813 * 4 3 2 34 34 H 1.09005 * 109.47222 * 300.00375 * 4 3 2 35 35 H 1.07996 * 126.29551 * 0.02562 * 6 5 4 36 36 H 0.96998 * 120.00607 * 5.15380 * 10 8 7 37 37 H 1.08996 * 109.47110 * 64.89201 * 11 10 8 38 38 H 1.08997 * 109.47276 * 304.89124 * 11 10 8 39 39 H 1.09006 * 109.46857 * 64.90072 * 12 11 10 40 40 H 1.08991 * 109.47549 * 304.90313 * 12 11 10 41 41 H 1.08994 * 109.47232 * 159.61010 * 14 13 12 42 42 H 1.08999 * 109.46958 * 39.61158 * 14 13 12 43 43 H 0.96999 * 120.00403 * 355.03653 * 15 14 13 44 44 H 0.97002 * 120.00063 * 180.02562 * 19 18 16 45 45 H 1.08997 * 117.50115 * 214.97096 * 24 13 12 46 46 H 1.09006 * 117.50097 * 359.97438 * 24 13 12 47 47 H 1.08996 * 117.50028 * 359.97438 * 25 13 12 48 48 H 1.08999 * 117.49398 * 145.00560 * 25 13 12 49 49 H 1.07992 * 125.99068 * 179.73501 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 4.1313 2.5232 -0.0013 6 6 5.0216 2.9858 0.8908 7 6 5.3264 4.2843 0.5348 8 6 6.2617 5.1861 1.2316 9 8 6.8517 4.8022 2.2233 10 7 6.4636 6.4358 0.7689 11 6 7.4749 7.2931 1.3923 12 6 7.4183 8.6875 0.7649 13 6 8.5525 9.5465 1.3278 14 6 8.4612 9.8637 2.8218 15 7 7.5236 10.9699 3.0295 16 6 7.2009 11.3644 4.3006 17 1 7.6921 10.9097 5.1481 18 6 6.2385 12.3447 4.4998 19 7 5.8417 12.6391 5.7197 20 14 5.5065 13.2460 3.0365 21 1 4.2509 12.5726 2.6179 22 1 5.2115 14.6507 3.4174 23 1 6.4751 13.2313 1.9110 24 6 9.9479 9.3543 0.7304 25 6 9.1472 10.6189 0.4128 26 6 4.5695 4.5894 -0.6186 27 7 3.8679 3.5349 -0.9313 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6885 1.8464 0.8900 32 1 1.6886 1.8465 -0.8900 33 1 3.8567 0.6440 -0.8909 34 1 3.8575 0.6437 0.8891 35 1 5.4252 2.4421 1.7321 36 1 5.9394 6.7676 0.0233 37 1 8.4638 6.8631 1.2333 38 1 7.2789 7.3677 2.4618 39 1 6.4603 9.1523 0.9985 40 1 7.5277 8.6042 -0.3163 41 1 9.4457 10.1470 3.1939 42 1 8.1091 8.9832 3.3593 43 1 7.1314 11.4231 2.2669 44 1 5.1689 13.3238 5.8589 45 1 10.8009 9.4540 1.4017 46 1 10.0582 8.6155 -0.0635 47 1 8.7308 10.7122 -0.5901 48 1 9.4735 11.5504 0.8753 49 1 4.5731 5.5296 -1.1497 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167915186.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:02 Heat of formation + Delta-G solvation = 32.921298 kcal Electronic energy + Delta-G solvation = -27822.410304 eV Core-core repulsion = 23787.791328 eV Total energy + Delta-G solvation = -4034.618976 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.73854 -39.33804 -38.53392 -38.24394 -34.86461 -34.36279 -33.96030 -31.07753 -30.92882 -30.49180 -29.20709 -26.87930 -26.26527 -24.36969 -23.73373 -22.68106 -22.23355 -21.62476 -21.05853 -20.25985 -18.90961 -18.20356 -17.38123 -17.04545 -16.84483 -16.05164 -15.95905 -15.74014 -15.53681 -15.16300 -14.90727 -14.59799 -14.47426 -14.22242 -14.02503 -13.62039 -13.48185 -13.16196 -13.12972 -12.64350 -12.57582 -12.26502 -12.18877 -12.01757 -11.94210 -11.65489 -11.36744 -11.28763 -11.18213 -10.90708 -10.66782 -10.33648 -10.16400 -10.00515 -9.89576 -9.82220 -9.61408 -9.43848 -9.16237 -8.87623 -8.79995 -7.16545 -5.73192 -3.07317 1.21229 1.75111 1.88482 3.16493 3.23389 3.39266 3.40346 3.42295 3.47093 3.97206 4.02024 4.28126 4.41519 4.42357 4.61779 4.62521 4.75457 4.78779 4.85227 4.90661 4.93535 4.99562 5.05547 5.07397 5.12467 5.18946 5.21711 5.34132 5.50319 5.56560 5.63523 5.70871 5.83521 5.91095 6.02406 6.11183 6.15808 6.30699 6.33617 6.35730 6.39972 6.46752 6.50319 6.73604 6.78632 7.13633 7.55417 8.05684 8.29150 8.46506 9.26784 9.99019 10.20453 11.45283 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.012861 B = 0.002003 C = 0.001845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2176.613982 B =13976.656618 C =15175.986362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.391 6.391 3 C 0.050 3.950 4 C 0.134 3.866 5 N -0.363 5.363 6 C 0.132 3.868 7 C -0.288 4.288 8 C 0.593 3.407 9 O -0.547 6.547 10 N -0.725 5.725 11 C 0.124 3.876 12 C -0.089 4.089 13 C -0.127 4.127 14 C 0.191 3.809 15 N -0.751 5.751 16 C -0.241 4.241 17 H 0.089 0.911 18 C 0.003 3.997 19 N -0.934 5.934 20 Si 0.882 3.118 21 H -0.286 1.286 22 H -0.292 1.292 23 H -0.276 1.276 24 C -0.172 4.172 25 C -0.169 4.169 26 C 0.085 3.915 27 N -0.298 5.298 28 H 0.045 0.955 29 H 0.091 0.909 30 H 0.045 0.955 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.099 0.901 34 H 0.110 0.890 35 H 0.191 0.809 36 H 0.397 0.603 37 H 0.066 0.934 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.063 0.937 41 H 0.024 0.976 42 H 0.038 0.962 43 H 0.361 0.639 44 H 0.258 0.742 45 H 0.094 0.906 46 H 0.090 0.910 47 H 0.088 0.912 48 H 0.098 0.902 49 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.781 -23.932 -17.888 30.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.309 6.309 3 C -0.027 4.027 4 C 0.013 3.987 5 N -0.143 5.143 6 C -0.018 4.018 7 C -0.303 4.303 8 C 0.380 3.620 9 O -0.425 6.425 10 N -0.376 5.376 11 C 0.001 3.999 12 C -0.127 4.127 13 C -0.128 4.128 14 C 0.064 3.936 15 N -0.397 5.397 16 C -0.371 4.371 17 H 0.107 0.893 18 C -0.192 4.192 19 N -0.582 5.582 20 Si 0.713 3.287 21 H -0.212 1.212 22 H -0.218 1.218 23 H -0.202 1.202 24 C -0.209 4.209 25 C -0.206 4.206 26 C -0.103 4.103 27 N -0.117 5.117 28 H 0.063 0.937 29 H 0.109 0.891 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.117 0.883 34 H 0.128 0.872 35 H 0.207 0.793 36 H 0.231 0.769 37 H 0.084 0.916 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.082 0.918 41 H 0.042 0.958 42 H 0.056 0.944 43 H 0.194 0.806 44 H 0.068 0.932 45 H 0.113 0.887 46 H 0.108 0.892 47 H 0.107 0.893 48 H 0.116 0.884 49 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -5.163 -25.031 -17.741 31.112 hybrid contribution -0.539 1.595 -0.756 1.846 sum -5.702 -23.436 -18.497 30.396 Atomic orbital electron populations 1.22797 0.79773 1.03201 1.00497 1.87775 1.20722 1.26798 1.95629 1.22652 0.92374 0.85477 1.02239 1.21504 0.92837 0.78559 1.05795 1.48316 1.33005 1.12081 1.20882 1.23026 0.90470 0.94372 0.93955 1.20321 1.10348 0.96348 1.03298 1.17175 0.80674 0.81116 0.83058 1.90797 1.50289 1.75867 1.25588 1.45765 1.40809 1.13996 1.37005 1.21385 0.90848 0.88900 0.98793 1.21239 0.99117 0.93501 0.98854 1.21656 0.93626 1.01229 0.96302 1.20194 0.93416 0.91239 0.88791 1.42664 1.53858 1.38119 1.05047 1.19065 1.16893 1.17149 0.84026 0.89294 1.24663 0.98587 1.00066 0.95910 1.69725 1.34117 1.35264 1.19065 0.86537 0.79231 0.79749 0.83194 1.21234 1.21831 1.20175 1.23005 0.94563 1.00186 1.03154 1.22952 1.03918 0.93995 0.99724 1.24107 0.93457 0.97767 0.95015 1.77159 1.24335 0.96783 1.13423 0.93659 0.89087 0.93674 0.92433 0.91441 0.88277 0.87175 0.79250 0.76941 0.91608 0.90188 0.90311 0.91829 0.95815 0.94406 0.80598 0.93157 0.88730 0.89183 0.89327 0.88396 0.79226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.39 -2.74 10.70 -35.23 -0.38 -3.12 16 3 C 0.05 0.32 6.11 37.16 0.23 0.55 16 4 C 0.13 0.78 6.86 -4.04 -0.03 0.75 16 5 N -0.36 -3.07 3.65 -60.81 -0.22 -3.29 16 6 C 0.13 1.21 11.25 -16.56 -0.19 1.03 16 7 C -0.29 -3.09 6.13 -105.07 -0.64 -3.73 16 8 C 0.59 7.91 7.81 -12.52 -0.10 7.81 16 9 O -0.55 -9.41 16.88 5.27 0.09 -9.32 16 10 N -0.73 -8.36 5.54 -61.38 -0.34 -8.70 16 11 C 0.12 1.64 5.47 -4.04 -0.02 1.62 16 12 C -0.09 -1.14 5.22 -26.73 -0.14 -1.28 16 13 C -0.13 -1.89 1.53 -154.50 -0.24 -2.12 16 14 C 0.19 3.70 6.12 -4.04 -0.02 3.68 16 15 N -0.75 -17.83 5.37 -59.92 -0.32 -18.15 16 16 C -0.24 -6.91 10.46 -15.06 -0.16 -7.07 16 17 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 18 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 19 N -0.93 -29.68 13.97 55.49 0.78 -28.91 16 20 Si 0.88 22.20 27.76 -169.99 -4.72 17.48 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 23 H -0.28 -6.49 6.50 56.52 0.37 -6.12 16 24 C -0.17 -2.13 9.90 -26.73 -0.26 -2.40 16 25 C -0.17 -2.32 9.82 -26.73 -0.26 -2.58 16 26 C 0.08 0.77 11.51 -16.98 -0.20 0.57 16 27 N -0.30 -2.94 12.33 30.86 0.38 -2.56 16 28 H 0.04 0.19 8.14 -51.93 -0.42 -0.24 16 29 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.11 0.42 8.06 -51.93 -0.42 0.00 16 35 H 0.19 1.35 8.06 -52.49 -0.42 0.93 16 36 H 0.40 3.37 7.45 -40.82 -0.30 3.07 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.08 1.30 6.92 -51.93 -0.36 0.94 16 39 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 41 H 0.02 0.48 7.94 -51.93 -0.41 0.06 16 42 H 0.04 0.77 6.72 -51.93 -0.35 0.42 16 43 H 0.36 8.36 5.48 -40.82 -0.22 8.13 16 44 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 45 H 0.09 1.17 8.08 -51.93 -0.42 0.75 16 46 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 47 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 48 H 0.10 1.50 8.14 -51.93 -0.42 1.07 16 49 H 0.19 1.11 7.51 -52.49 -0.39 0.72 16 LS Contribution 411.85 15.07 6.21 6.21 Total: -1.00 -36.68 411.85 -7.51 -44.19 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -7.97 Total: 8.08 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: -1.01 Total: -1.90 kcal Atomic # 7 Polarization: -61.88 SS G_CDS: 0.27 Total: -61.61 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: -0.29 Total: -12.44 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.72 Total: 17.48 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -36.68 -7.51 -44.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167915186.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.110 kcal (2) G-P(sol) polarization free energy of solvation -36.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds