Wall clock time and date at job start Tue Mar 31 2020 19:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42904 * 113.99927 * 2 1 4 4 C 1.52995 * 109.47411 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47429 * 179.97438 * 4 3 2 6 6 C 1.34256 * 125.75089 * 124.99895 * 5 4 3 7 7 C 1.38050 * 107.41337 * 180.02562 * 6 5 4 8 8 C 1.47425 * 126.41212 * 179.97438 * 7 6 5 9 9 O 1.21609 * 120.00429 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99752 * 179.97438 * 8 7 6 11 11 C 1.46505 * 119.99848 * 185.14834 * 10 8 7 12 12 C 1.52999 * 109.47009 * 184.89163 * 11 10 8 13 13 C 1.53004 * 109.47273 * 184.89527 * 12 11 10 14 14 C 1.53002 * 115.55343 * 294.51793 * 13 12 11 15 15 N 1.46494 * 109.46768 * 279.61465 * 14 13 12 16 16 C 1.36939 * 119.99892 * 175.04191 * 15 14 13 17 17 H 1.07996 * 119.99770 * 4.51799 * 16 15 14 18 18 C 1.38807 * 119.99939 * 184.79124 * 16 15 14 19 19 N 1.31620 * 120.00029 * 173.90418 * 18 16 15 20 20 Si 1.86803 * 120.00115 * 353.90492 * 18 16 15 21 21 H 1.48503 * 109.47131 * 94.13488 * 20 18 16 22 22 H 1.48501 * 109.46900 * 214.13113 * 20 18 16 23 23 H 1.48493 * 109.47189 * 334.13086 * 20 18 16 24 24 C 1.53003 * 117.51335 * 80.21306 * 13 12 11 25 25 C 1.53002 * 117.49651 * 148.84158 * 13 12 11 26 26 C 1.41291 * 107.17206 * 0.24366 * 7 6 5 27 27 N 1.30455 * 108.01992 * 359.58935 * 26 7 6 28 28 H 1.08999 * 109.47106 * 60.00053 * 1 2 3 29 29 H 1.09004 * 109.46869 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47105 * 299.99638 * 1 2 3 31 31 H 1.09006 * 109.47004 * 59.99732 * 3 2 1 32 32 H 1.09005 * 109.47234 * 300.00409 * 3 2 1 33 33 H 1.09002 * 109.46814 * 59.99813 * 4 3 2 34 34 H 1.09005 * 109.47222 * 300.00375 * 4 3 2 35 35 H 1.07996 * 126.29551 * 0.02562 * 6 5 4 36 36 H 0.96998 * 120.00607 * 5.15380 * 10 8 7 37 37 H 1.08996 * 109.47110 * 64.89201 * 11 10 8 38 38 H 1.08997 * 109.47276 * 304.89124 * 11 10 8 39 39 H 1.09006 * 109.46857 * 64.90072 * 12 11 10 40 40 H 1.08991 * 109.47549 * 304.90313 * 12 11 10 41 41 H 1.08994 * 109.47232 * 159.61010 * 14 13 12 42 42 H 1.08999 * 109.46958 * 39.61158 * 14 13 12 43 43 H 0.96999 * 120.00403 * 355.03653 * 15 14 13 44 44 H 0.97002 * 120.00063 * 180.02562 * 19 18 16 45 45 H 1.08997 * 117.50115 * 214.97096 * 24 13 12 46 46 H 1.09006 * 117.50097 * 359.97438 * 24 13 12 47 47 H 1.08996 * 117.50028 * 359.97438 * 25 13 12 48 48 H 1.08999 * 117.49398 * 145.00560 * 25 13 12 49 49 H 1.07992 * 125.99068 * 179.73501 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 4.1313 2.5232 -0.0013 6 6 5.0216 2.9858 0.8908 7 6 5.3264 4.2843 0.5348 8 6 6.2617 5.1861 1.2316 9 8 6.8517 4.8022 2.2233 10 7 6.4636 6.4358 0.7689 11 6 7.4749 7.2931 1.3923 12 6 7.4183 8.6875 0.7649 13 6 8.5525 9.5465 1.3278 14 6 8.4612 9.8637 2.8218 15 7 7.5236 10.9699 3.0295 16 6 7.2009 11.3644 4.3006 17 1 7.6921 10.9097 5.1481 18 6 6.2385 12.3447 4.4998 19 7 5.8417 12.6391 5.7197 20 14 5.5065 13.2460 3.0365 21 1 4.2509 12.5726 2.6179 22 1 5.2115 14.6507 3.4174 23 1 6.4751 13.2313 1.9110 24 6 9.9479 9.3543 0.7304 25 6 9.1472 10.6189 0.4128 26 6 4.5695 4.5894 -0.6186 27 7 3.8679 3.5349 -0.9313 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6885 1.8464 0.8900 32 1 1.6886 1.8465 -0.8900 33 1 3.8567 0.6440 -0.8909 34 1 3.8575 0.6437 0.8891 35 1 5.4252 2.4421 1.7321 36 1 5.9394 6.7676 0.0233 37 1 8.4638 6.8631 1.2333 38 1 7.2789 7.3677 2.4618 39 1 6.4603 9.1523 0.9985 40 1 7.5277 8.6042 -0.3163 41 1 9.4457 10.1470 3.1939 42 1 8.1091 8.9832 3.3593 43 1 7.1314 11.4231 2.2669 44 1 5.1689 13.3238 5.8589 45 1 10.8009 9.4540 1.4017 46 1 10.0582 8.6155 -0.0635 47 1 8.7308 10.7122 -0.5901 48 1 9.4735 11.5504 0.8753 49 1 4.5731 5.5296 -1.1497 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167915186.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:00 Heat of formation + Delta-G solvation = 5.777983 kcal Electronic energy + Delta-G solvation = -27823.587327 eV Core-core repulsion = 23787.791328 eV Total energy + Delta-G solvation = -4035.795998 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.44444 -40.37544 -39.46123 -38.98976 -36.15484 -35.71038 -34.94908 -33.18864 -31.80775 -31.25058 -29.94689 -28.08366 -27.28396 -25.22763 -24.39825 -24.28719 -23.39950 -22.80224 -21.71548 -21.20232 -20.37692 -19.34221 -18.80554 -17.65966 -17.36881 -17.02385 -16.77610 -16.56943 -16.50444 -16.38412 -16.14595 -15.75731 -15.47977 -15.28798 -15.05993 -14.76393 -14.68369 -14.31240 -14.15965 -13.86441 -13.80730 -13.53580 -13.08604 -13.03412 -12.84339 -12.74988 -12.44845 -12.37400 -12.26468 -12.17350 -12.07777 -11.90675 -11.74969 -11.11092 -10.98011 -10.85401 -10.80558 -10.66655 -10.60725 -10.14266 -9.68107 -9.26264 -8.02343 -5.34901 0.46818 1.11751 1.17809 1.37601 1.41977 1.50240 2.29765 2.46671 2.49497 2.70568 2.87245 3.27848 3.48038 3.76534 3.77416 3.83135 3.83722 3.83980 3.92061 4.06923 4.09610 4.16633 4.18111 4.27514 4.43241 4.46254 4.46937 4.49346 4.60794 4.62607 4.67203 4.74445 4.81155 4.87563 4.95050 5.00545 5.11665 5.19955 5.31364 5.35082 5.37797 5.39080 5.53000 5.73051 5.76514 5.99550 6.21960 6.44154 6.66909 7.09546 7.33158 7.85935 8.08545 9.19471 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.012861 B = 0.002003 C = 0.001845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2176.613982 B =13976.656618 C =15175.986362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.405 6.405 3 C 0.056 3.944 4 C 0.130 3.870 5 N -0.358 5.358 6 C 0.137 3.863 7 C -0.311 4.311 8 C 0.590 3.410 9 O -0.596 6.596 10 N -0.713 5.713 11 C 0.131 3.869 12 C -0.077 4.077 13 C -0.146 4.146 14 C 0.188 3.812 15 N -0.749 5.749 16 C -0.236 4.236 17 H 0.049 0.951 18 C -0.067 4.067 19 N -0.985 5.985 20 Si 0.959 3.041 21 H -0.277 1.277 22 H -0.296 1.296 23 H -0.246 1.246 24 C -0.148 4.148 25 C -0.165 4.165 26 C 0.092 3.908 27 N -0.318 5.318 28 H 0.049 0.951 29 H 0.105 0.895 30 H 0.048 0.952 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.108 0.892 34 H 0.132 0.868 35 H 0.206 0.794 36 H 0.414 0.586 37 H 0.070 0.930 38 H 0.039 0.961 39 H 0.063 0.937 40 H 0.103 0.897 41 H 0.016 0.984 42 H 0.022 0.978 43 H 0.368 0.632 44 H 0.258 0.742 45 H 0.091 0.909 46 H 0.120 0.880 47 H 0.116 0.884 48 H 0.079 0.921 49 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.065 -24.555 -21.764 33.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.323 6.323 3 C -0.022 4.022 4 C 0.010 3.990 5 N -0.137 5.137 6 C -0.015 4.015 7 C -0.326 4.326 8 C 0.379 3.621 9 O -0.478 6.478 10 N -0.364 5.364 11 C 0.007 3.993 12 C -0.115 4.115 13 C -0.147 4.147 14 C 0.062 3.938 15 N -0.395 5.395 16 C -0.367 4.367 17 H 0.067 0.933 18 C -0.258 4.258 19 N -0.635 5.635 20 Si 0.785 3.215 21 H -0.203 1.203 22 H -0.223 1.223 23 H -0.171 1.171 24 C -0.186 4.186 25 C -0.203 4.203 26 C -0.095 4.095 27 N -0.138 5.138 28 H 0.068 0.932 29 H 0.123 0.877 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.126 0.874 34 H 0.150 0.850 35 H 0.223 0.777 36 H 0.251 0.749 37 H 0.088 0.912 38 H 0.058 0.942 39 H 0.082 0.918 40 H 0.121 0.879 41 H 0.033 0.967 42 H 0.040 0.960 43 H 0.202 0.798 44 H 0.066 0.934 45 H 0.109 0.891 46 H 0.138 0.862 47 H 0.134 0.866 48 H 0.097 0.903 49 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -5.447 -25.680 -21.694 34.055 hybrid contribution -0.411 1.674 0.553 1.810 sum -5.858 -24.006 -21.141 32.520 Atomic orbital electron populations 1.22969 0.78731 1.04305 1.00892 1.87751 1.21948 1.26951 1.95673 1.22559 0.92762 0.85298 1.01573 1.21737 0.92381 0.77535 1.07336 1.48494 1.32494 1.12568 1.20185 1.23332 0.89961 0.94179 0.94057 1.20202 1.11209 0.96732 1.04476 1.17563 0.80415 0.81611 0.82479 1.90768 1.52364 1.76855 1.27805 1.45617 1.40422 1.13291 1.37076 1.21182 0.91455 0.89909 0.96757 1.21153 0.97444 0.91999 1.00871 1.21476 0.96440 1.03521 0.93220 1.20260 0.91630 0.89127 0.92814 1.42606 1.54476 1.39156 1.03245 1.19026 1.16069 1.16515 0.85130 0.93294 1.25573 0.99556 1.01365 0.99302 1.69923 1.35320 1.36317 1.21979 0.85331 0.78894 0.77479 0.79788 1.20326 1.22290 1.17052 1.23100 0.92603 0.99953 1.02918 1.23024 1.03679 0.93292 1.00260 1.24536 0.92196 0.98582 0.94234 1.77142 1.25012 0.97348 1.14263 0.93223 0.87710 0.93337 0.92886 0.92309 0.87435 0.85006 0.77740 0.74895 0.91195 0.94226 0.91842 0.87863 0.96653 0.95988 0.79831 0.93366 0.89086 0.86168 0.86572 0.90284 0.76420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 113.37 1.25 1.47 16 2 O -0.40 -5.20 10.70 -148.98 -1.59 -6.80 16 3 C 0.06 0.66 6.11 71.98 0.44 1.10 16 4 C 0.13 1.30 6.86 86.38 0.59 1.90 16 5 N -0.36 -5.51 3.65 -346.29 -1.26 -6.77 16 6 C 0.14 2.35 11.25 84.28 0.95 3.30 16 7 C -0.31 -6.30 6.13 -20.15 -0.12 -6.43 16 8 C 0.59 15.49 7.81 86.66 0.68 16.17 16 9 O -0.60 -20.96 16.88 -4.06 -0.07 -21.03 16 10 N -0.71 -15.43 5.54 -466.37 -2.58 -18.01 16 11 C 0.13 3.36 5.47 86.38 0.47 3.83 16 12 C -0.08 -1.77 5.22 30.60 0.16 -1.61 16 13 C -0.15 -4.02 1.53 -52.18 -0.08 -4.10 16 14 C 0.19 7.38 6.12 86.38 0.53 7.91 16 15 N -0.75 -35.64 5.37 -343.47 -1.84 -37.48 16 16 C -0.24 -13.97 10.46 84.03 0.88 -13.09 16 17 H 0.05 3.21 8.06 -2.91 -0.02 3.19 16 18 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 19 N -0.98 -64.66 13.97 21.65 0.30 -64.35 16 20 Si 0.96 45.77 27.76 68.60 1.90 47.67 16 21 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 22 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 23 H -0.25 -10.45 6.50 99.48 0.65 -9.80 16 24 C -0.15 -3.19 9.90 30.60 0.30 -2.89 16 25 C -0.17 -3.97 9.82 30.60 0.30 -3.67 16 26 C 0.09 1.49 11.51 85.65 0.99 2.47 16 27 N -0.32 -5.74 12.33 -56.27 -0.69 -6.44 16 28 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.10 0.55 8.14 -2.38 -0.02 0.53 16 30 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 32 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 33 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.13 0.74 8.06 -2.38 -0.02 0.72 16 35 H 0.21 2.71 8.06 -2.91 -0.02 2.69 16 36 H 0.41 5.92 7.45 -92.71 -0.69 5.23 16 37 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.04 1.34 6.92 -2.39 -0.02 1.33 16 39 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 40 H 0.10 1.60 8.09 -2.39 -0.02 1.58 16 41 H 0.02 0.63 7.94 -2.39 -0.02 0.61 16 42 H 0.02 0.94 6.72 -2.39 -0.02 0.92 16 43 H 0.37 16.42 5.48 -92.71 -0.51 15.91 16 44 H 0.26 16.02 8.31 -92.71 -0.77 15.25 16 45 H 0.09 2.04 8.08 -2.39 -0.02 2.02 16 46 H 0.12 1.93 8.14 -2.38 -0.02 1.91 16 47 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 48 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 49 H 0.22 1.87 7.51 -2.91 -0.02 1.85 16 Total: -1.00 -83.06 411.85 1.66 -81.41 By element: Atomic # 1 Polarization: 29.30 SS G_CDS: -0.30 Total: 29.00 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: 7.80 Total: 2.80 kcal Atomic # 7 Polarization: -126.97 SS G_CDS: -6.08 Total: -133.06 kcal Atomic # 8 Polarization: -26.16 SS G_CDS: -1.66 Total: -27.83 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 1.90 Total: 47.67 kcal Total: -83.06 1.66 -81.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167915186.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.183 kcal (2) G-P(sol) polarization free energy of solvation -83.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds