Wall clock time and date at job start Tue Mar 31 2020 19:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99714 * 2 1 4 4 H 1.48505 * 109.46898 * 240.00303 * 3 2 1 5 5 H 1.48501 * 109.47103 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47412 * 120.00076 * 3 2 1 7 7 C 1.38805 * 120.00204 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00007 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00133 * 359.97438 * 7 2 1 10 10 C 1.46508 * 120.00102 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46845 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46886 * 179.97438 * 11 10 9 13 13 N 1.46500 * 109.47224 * 175.71708 * 12 11 10 14 14 C 1.46496 * 119.99706 * 93.03581 * 13 12 11 15 15 C 1.53005 * 109.47308 * 82.25471 * 14 13 12 16 16 C 1.54972 * 110.92048 * 73.72171 * 15 14 13 17 17 C 1.54270 * 104.15588 * 156.29701 * 16 15 14 18 18 C 1.53876 * 106.63960 * 336.44683 * 17 16 15 19 19 C 1.54264 * 106.60206 * 359.97438 * 18 17 16 20 20 C 1.34776 * 119.99950 * 273.03449 * 13 12 11 21 21 O 1.21280 * 119.99891 * 0.02562 * 20 13 12 22 22 C 1.50701 * 119.99752 * 180.02562 * 20 13 12 23 23 N 1.46502 * 109.47174 * 180.02562 * 22 20 13 24 24 C 1.34593 * 126.44220 * 124.99736 * 23 22 20 25 25 N 1.31070 * 106.67768 * 179.97438 * 24 23 22 26 26 N 1.28837 * 107.99294 * 359.97438 * 25 24 23 27 27 N 1.28738 * 109.39874 * 359.73583 * 26 25 24 28 28 H 0.97002 * 120.00306 * 359.97438 * 1 2 3 29 29 H 0.96999 * 120.00182 * 0.02562 * 9 7 2 30 30 H 1.08992 * 109.46783 * 60.00328 * 10 9 7 31 31 H 1.08999 * 109.47062 * 299.99931 * 10 9 7 32 32 H 1.08997 * 109.47010 * 60.00679 * 11 10 9 33 33 H 1.08999 * 109.47470 * 299.99950 * 11 10 9 34 34 H 1.09000 * 109.47063 * 55.71740 * 12 11 10 35 35 H 1.09001 * 109.47272 * 295.72000 * 12 11 10 36 36 H 1.09001 * 109.47369 * 322.25261 * 14 13 12 37 37 H 1.08999 * 109.46881 * 202.25587 * 14 13 12 38 38 H 1.08996 * 110.67015 * 310.42247 * 15 14 13 39 39 H 1.09000 * 110.47263 * 37.64846 * 16 15 14 40 40 H 1.08995 * 110.52798 * 274.97807 * 16 15 14 41 41 H 1.09003 * 110.02690 * 217.14058 * 17 16 15 42 42 H 1.08992 * 110.03157 * 95.75829 * 17 16 15 43 43 H 1.08996 * 110.03100 * 119.26292 * 18 17 16 44 44 H 1.09006 * 110.02968 * 240.64306 * 18 17 16 45 45 H 1.08992 * 110.48702 * 142.28808 * 19 18 17 46 46 H 1.09001 * 110.48729 * 264.80001 * 19 18 17 47 47 H 1.08998 * 109.47114 * 299.99971 * 22 20 13 48 48 H 1.08998 * 109.47336 * 60.00177 * 22 20 13 49 49 H 1.07998 * 126.65904 * 359.96425 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2126 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6966 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0016 10 6 2.0583 -3.6568 0.0016 11 6 1.0640 -4.8197 0.0022 12 6 1.8290 -6.1447 0.0016 13 7 0.8805 -7.2563 0.1054 14 6 0.3745 -7.9030 -1.1078 15 6 1.3936 -8.9327 -1.6000 16 6 1.3942 -10.1884 -0.6917 17 6 1.9492 -11.3080 -1.5964 18 6 1.6825 -10.8741 -3.0484 19 6 0.9740 -9.5057 -2.9765 20 6 0.4735 -7.6840 1.3169 21 8 0.8922 -7.1483 2.3212 22 6 -0.5018 -8.8279 1.4236 23 7 -0.7839 -9.0991 2.8354 24 6 -1.9976 -9.1325 3.4161 25 7 -1.8013 -9.4083 4.6824 26 7 -0.5332 -9.5380 4.8695 27 7 0.0842 -9.3576 3.7543 28 1 -0.4851 0.8400 0.0004 29 1 0.3557 -2.3881 0.0016 30 1 2.6855 -3.7140 0.8911 31 1 2.6842 -3.7149 -0.8888 32 1 0.4371 -4.7622 -0.8876 33 1 0.4377 -4.7618 0.8924 34 1 2.5126 -6.1699 0.8502 35 1 2.3963 -6.2363 -0.9247 36 1 0.2152 -7.1513 -1.8809 37 1 -0.5689 -8.4024 -0.8868 38 1 2.3899 -8.4937 -1.6516 39 1 0.3806 -10.4260 -0.3689 40 1 2.0444 -10.0366 0.1698 41 1 1.4355 -12.2463 -1.3868 42 1 3.0204 -11.4243 -1.4321 43 1 2.6245 -10.7790 -3.5886 44 1 1.0403 -11.6023 -3.5438 45 1 1.3175 -8.8555 -3.7810 46 1 -0.1074 -9.6330 -3.0254 47 1 -1.4278 -8.5647 0.9125 48 1 -0.0716 -9.7165 0.9616 49 1 -2.9486 -8.9645 2.9326 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177218315.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:24 Heat of formation + Delta-G solvation = 93.078231 kcal Electronic energy + Delta-G solvation = -29394.403842 eV Core-core repulsion = 25394.686217 eV Total energy + Delta-G solvation = -3999.717624 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -44.34901 -40.66020 -38.61602 -36.49786 -35.57732 -34.95775 -32.70212 -32.46327 -30.66766 -30.25689 -29.13494 -28.82712 -25.68441 -25.17985 -24.02163 -23.64221 -22.63117 -21.09975 -20.98613 -20.67459 -19.56778 -18.21240 -17.86698 -17.09990 -16.87544 -16.45437 -16.18819 -16.08948 -15.87806 -15.02788 -14.66034 -14.56141 -14.24203 -14.04574 -13.78932 -13.67117 -13.32372 -13.13804 -12.96540 -12.68470 -12.33588 -12.22596 -11.99378 -11.84088 -11.64261 -11.57920 -11.42302 -11.32688 -11.22681 -11.05226 -10.97145 -10.87257 -10.85526 -10.78743 -10.58287 -10.49254 -10.15259 -10.02332 -9.73244 -8.95232 -8.87584 -6.93418 -5.76999 -3.05933 1.02234 1.54985 2.11198 2.11593 2.55733 3.44209 3.48378 3.49604 3.61777 3.85132 3.96171 4.04049 4.08827 4.14151 4.28220 4.51277 4.54620 4.59217 4.82840 4.90654 4.92822 5.04438 5.08891 5.13580 5.19480 5.21137 5.25292 5.33494 5.39676 5.46261 5.49413 5.54391 5.57780 5.63717 5.68725 5.73903 5.81061 5.86783 5.89448 5.97181 6.20719 6.31491 6.32528 6.79466 6.80808 6.97196 7.68765 7.71701 8.41912 8.43932 9.52806 10.10427 10.44915 11.46023 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.009114 B = 0.002819 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3071.308437 B = 9929.201207 C =12402.769765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.014 4.014 3 Si 0.909 3.091 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.240 4.240 8 H 0.070 0.930 9 N -0.733 5.733 10 C 0.157 3.843 11 C -0.138 4.138 12 C 0.121 3.879 13 N -0.601 5.601 14 C 0.108 3.892 15 C -0.113 4.113 16 C -0.129 4.129 17 C -0.124 4.124 18 C -0.125 4.125 19 C -0.118 4.118 20 C 0.501 3.499 21 O -0.500 6.500 22 C 0.081 3.919 23 N -0.299 5.299 24 C 0.159 3.841 25 N -0.306 5.306 26 N -0.079 5.079 27 N -0.062 5.062 28 H 0.256 0.744 29 H 0.383 0.617 30 H 0.020 0.980 31 H 0.019 0.981 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.064 0.936 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.063 0.937 45 H 0.070 0.930 46 H 0.069 0.931 47 H 0.140 0.860 48 H 0.141 0.859 49 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.244 -27.948 -8.242 29.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.372 4.372 8 H 0.088 0.912 9 N -0.377 5.377 10 C 0.029 3.971 11 C -0.177 4.177 12 C -0.001 4.001 13 N -0.334 5.334 14 C -0.015 4.015 15 C -0.133 4.133 16 C -0.166 4.166 17 C -0.161 4.161 18 C -0.162 4.162 19 C -0.156 4.156 20 C 0.285 3.715 21 O -0.373 6.373 22 C -0.044 4.044 23 N -0.102 5.102 24 C -0.140 4.140 25 N -0.153 5.153 26 N -0.073 5.073 27 N -0.049 5.049 28 H 0.065 0.935 29 H 0.216 0.784 30 H 0.038 0.962 31 H 0.036 0.964 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.104 0.896 35 H 0.101 0.899 36 H 0.110 0.890 37 H 0.097 0.903 38 H 0.106 0.894 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.089 0.911 46 H 0.088 0.912 47 H 0.158 0.842 48 H 0.158 0.842 49 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -2.088 -27.813 -6.532 28.646 hybrid contribution -0.460 1.235 -1.133 1.738 sum -2.548 -26.577 -7.664 27.778 Atomic orbital electron populations 1.69651 1.05151 1.25786 1.57782 1.24748 0.95547 0.97746 1.02984 0.86245 0.78518 0.83418 0.77885 1.21242 1.21648 1.21205 1.19198 0.91038 0.84166 1.42757 0.91192 1.42326 1.05833 0.99996 1.89555 1.20529 0.93351 0.85419 0.97851 1.22049 0.99591 0.93703 1.02364 1.21559 0.90902 0.84348 1.03266 1.47893 1.46153 1.34529 1.04806 1.21803 0.96196 0.96050 0.87497 1.22664 1.00439 0.94915 0.95239 1.22665 1.00553 0.94897 0.98495 1.22109 1.01264 0.98129 0.94643 1.22120 1.00650 0.96785 0.96693 1.22359 1.00536 0.96318 0.96363 1.20026 0.82884 0.84276 0.84294 1.90893 1.55139 1.56169 1.35079 1.22518 1.03534 1.01903 0.76453 1.48177 1.05645 1.45709 1.10623 1.27743 0.92720 1.02571 0.90951 1.74988 1.09856 1.17616 1.12884 1.78675 0.97973 1.15707 1.14945 1.79010 1.18137 1.14529 0.93218 0.93461 0.78364 0.96197 0.96368 0.91881 0.91640 0.89621 0.89944 0.88994 0.90333 0.89381 0.91737 0.91244 0.91833 0.91684 0.91749 0.91789 0.91093 0.91232 0.84182 0.84221 0.74896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.68 13.06 55.49 0.72 -27.96 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.71 29.55 -169.99 -5.02 17.69 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 7 C -0.24 -6.88 9.99 -15.06 -0.15 -7.04 16 8 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 9 N -0.73 -19.02 5.60 -59.91 -0.34 -19.35 16 10 C 0.16 3.15 6.26 -4.04 -0.03 3.12 16 11 C -0.14 -2.15 5.64 -26.73 -0.15 -2.30 16 12 C 0.12 1.41 5.39 -4.04 -0.02 1.39 16 13 N -0.60 -5.37 2.45 -173.69 -0.42 -5.79 16 14 C 0.11 0.54 4.88 -4.04 -0.02 0.52 16 15 C -0.11 -0.54 3.08 -88.58 -0.27 -0.81 16 16 C -0.13 -0.60 4.83 -25.03 -0.12 -0.72 16 17 C -0.12 -0.58 6.80 -25.61 -0.17 -0.75 16 18 C -0.12 -0.53 6.80 -25.61 -0.17 -0.71 16 19 C -0.12 -0.46 6.27 -25.07 -0.16 -0.62 16 20 C 0.50 5.41 7.48 -10.99 -0.08 5.32 16 21 O -0.50 -8.26 15.34 5.56 0.09 -8.18 16 22 C 0.08 0.51 5.34 -5.19 -0.03 0.49 16 23 N -0.30 -3.02 3.19 -63.74 -0.20 -3.22 16 24 C 0.16 1.40 12.79 -90.40 -1.16 0.24 16 25 N -0.31 -4.05 12.36 29.59 0.37 -3.69 16 26 N -0.08 -1.22 13.43 60.35 0.81 -0.41 16 27 N -0.06 -0.89 12.31 60.35 0.74 -0.15 16 28 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 29 H 0.38 10.41 7.67 -40.82 -0.31 10.10 16 30 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.09 1.17 7.52 -51.93 -0.39 0.78 16 35 H 0.08 0.79 7.94 -51.93 -0.41 0.37 16 36 H 0.09 0.47 8.13 -51.93 -0.42 0.05 16 37 H 0.08 0.18 5.99 -51.93 -0.31 -0.13 16 38 H 0.09 0.53 8.03 -51.93 -0.42 0.12 16 39 H 0.06 0.20 5.67 -51.93 -0.29 -0.10 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 44 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 45 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 46 H 0.07 0.21 8.05 -51.93 -0.42 -0.21 16 47 H 0.14 0.26 7.37 -51.93 -0.38 -0.12 16 48 H 0.14 0.58 4.23 -51.93 -0.22 0.36 16 49 H 0.23 0.66 8.06 -52.49 -0.42 0.24 16 LS Contribution 395.88 15.07 5.97 5.97 Total: -1.00 -39.11 395.88 -7.70 -46.81 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -7.78 Total: 0.65 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: -2.63 Total: -2.36 kcal Atomic # 7 Polarization: -62.26 SS G_CDS: 1.68 Total: -60.58 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: 0.09 Total: -8.18 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -39.11 -7.70 -46.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177218315.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.892 kcal (2) G-P(sol) polarization free energy of solvation -39.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds