Wall clock time and date at job start Tue Mar 31 2020 19:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99714 * 2 1 4 4 H 1.48505 * 109.46898 * 240.00303 * 3 2 1 5 5 H 1.48501 * 109.47103 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47412 * 120.00076 * 3 2 1 7 7 C 1.38805 * 120.00204 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00007 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00133 * 359.97438 * 7 2 1 10 10 C 1.46508 * 120.00102 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46845 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46886 * 179.97438 * 11 10 9 13 13 N 1.46500 * 109.47224 * 175.71708 * 12 11 10 14 14 C 1.46496 * 119.99706 * 93.03581 * 13 12 11 15 15 C 1.53005 * 109.47308 * 82.25471 * 14 13 12 16 16 C 1.54972 * 110.92048 * 73.72171 * 15 14 13 17 17 C 1.54270 * 104.15588 * 156.29701 * 16 15 14 18 18 C 1.53876 * 106.63960 * 336.44683 * 17 16 15 19 19 C 1.54264 * 106.60206 * 359.97438 * 18 17 16 20 20 C 1.34776 * 119.99950 * 273.03449 * 13 12 11 21 21 O 1.21280 * 119.99891 * 0.02562 * 20 13 12 22 22 C 1.50701 * 119.99752 * 180.02562 * 20 13 12 23 23 N 1.46502 * 109.47174 * 180.02562 * 22 20 13 24 24 C 1.34593 * 126.44220 * 124.99736 * 23 22 20 25 25 N 1.31070 * 106.67768 * 179.97438 * 24 23 22 26 26 N 1.28837 * 107.99294 * 359.97438 * 25 24 23 27 27 N 1.28738 * 109.39874 * 359.73583 * 26 25 24 28 28 H 0.97002 * 120.00306 * 359.97438 * 1 2 3 29 29 H 0.96999 * 120.00182 * 0.02562 * 9 7 2 30 30 H 1.08992 * 109.46783 * 60.00328 * 10 9 7 31 31 H 1.08999 * 109.47062 * 299.99931 * 10 9 7 32 32 H 1.08997 * 109.47010 * 60.00679 * 11 10 9 33 33 H 1.08999 * 109.47470 * 299.99950 * 11 10 9 34 34 H 1.09000 * 109.47063 * 55.71740 * 12 11 10 35 35 H 1.09001 * 109.47272 * 295.72000 * 12 11 10 36 36 H 1.09001 * 109.47369 * 322.25261 * 14 13 12 37 37 H 1.08999 * 109.46881 * 202.25587 * 14 13 12 38 38 H 1.08996 * 110.67015 * 310.42247 * 15 14 13 39 39 H 1.09000 * 110.47263 * 37.64846 * 16 15 14 40 40 H 1.08995 * 110.52798 * 274.97807 * 16 15 14 41 41 H 1.09003 * 110.02690 * 217.14058 * 17 16 15 42 42 H 1.08992 * 110.03157 * 95.75829 * 17 16 15 43 43 H 1.08996 * 110.03100 * 119.26292 * 18 17 16 44 44 H 1.09006 * 110.02968 * 240.64306 * 18 17 16 45 45 H 1.08992 * 110.48702 * 142.28808 * 19 18 17 46 46 H 1.09001 * 110.48729 * 264.80001 * 19 18 17 47 47 H 1.08998 * 109.47114 * 299.99971 * 22 20 13 48 48 H 1.08998 * 109.47336 * 60.00177 * 22 20 13 49 49 H 1.07998 * 126.65904 * 359.96425 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2126 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6966 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0016 10 6 2.0583 -3.6568 0.0016 11 6 1.0640 -4.8197 0.0022 12 6 1.8290 -6.1447 0.0016 13 7 0.8805 -7.2563 0.1054 14 6 0.3745 -7.9030 -1.1078 15 6 1.3936 -8.9327 -1.6000 16 6 1.3942 -10.1884 -0.6917 17 6 1.9492 -11.3080 -1.5964 18 6 1.6825 -10.8741 -3.0484 19 6 0.9740 -9.5057 -2.9765 20 6 0.4735 -7.6840 1.3169 21 8 0.8922 -7.1483 2.3212 22 6 -0.5018 -8.8279 1.4236 23 7 -0.7839 -9.0991 2.8354 24 6 -1.9976 -9.1325 3.4161 25 7 -1.8013 -9.4083 4.6824 26 7 -0.5332 -9.5380 4.8695 27 7 0.0842 -9.3576 3.7543 28 1 -0.4851 0.8400 0.0004 29 1 0.3557 -2.3881 0.0016 30 1 2.6855 -3.7140 0.8911 31 1 2.6842 -3.7149 -0.8888 32 1 0.4371 -4.7622 -0.8876 33 1 0.4377 -4.7618 0.8924 34 1 2.5126 -6.1699 0.8502 35 1 2.3963 -6.2363 -0.9247 36 1 0.2152 -7.1513 -1.8809 37 1 -0.5689 -8.4024 -0.8868 38 1 2.3899 -8.4937 -1.6516 39 1 0.3806 -10.4260 -0.3689 40 1 2.0444 -10.0366 0.1698 41 1 1.4355 -12.2463 -1.3868 42 1 3.0204 -11.4243 -1.4321 43 1 2.6245 -10.7790 -3.5886 44 1 1.0403 -11.6023 -3.5438 45 1 1.3175 -8.8555 -3.7810 46 1 -0.1074 -9.6330 -3.0254 47 1 -1.4278 -8.5647 0.9125 48 1 -0.0716 -9.7165 0.9616 49 1 -2.9486 -8.9645 2.9326 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177218315.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:22 Heat of formation + Delta-G solvation = 65.909600 kcal Electronic energy + Delta-G solvation = -29395.581962 eV Core-core repulsion = 25394.686217 eV Total energy + Delta-G solvation = -4000.895745 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -45.18522 -41.42101 -39.10821 -37.61349 -36.53597 -36.30709 -34.19353 -33.47228 -32.07885 -30.83884 -30.03690 -29.39101 -27.07581 -25.77368 -25.04591 -24.82483 -23.89689 -22.57548 -21.44707 -21.02870 -20.31606 -19.17032 -18.91719 -18.56021 -17.65866 -17.27961 -16.87911 -16.80747 -16.52040 -16.40199 -15.95008 -15.49608 -15.38796 -15.14799 -14.78535 -14.55038 -14.35908 -14.11929 -13.81929 -13.53508 -13.43045 -13.22528 -13.02294 -12.79522 -12.73784 -12.49299 -12.35049 -12.23880 -12.18885 -12.11165 -11.98204 -11.86491 -11.84314 -11.80770 -11.63765 -11.46914 -11.42100 -11.18911 -10.96826 -10.88571 -9.77910 -9.05361 -7.99162 -5.28868 0.24818 0.92975 1.24257 1.34339 1.44804 1.48559 1.54572 1.82800 2.53502 3.01467 3.34302 3.36795 3.47290 3.65503 3.72097 3.75231 3.84385 3.90834 3.93214 4.00864 4.17271 4.29770 4.36546 4.43053 4.51682 4.56211 4.58783 4.62364 4.68653 4.70219 4.75961 4.81518 4.88366 4.90906 4.95204 5.02747 5.14615 5.18929 5.25632 5.27883 5.32202 5.37932 5.44836 5.44959 5.53207 5.59621 6.22428 6.23274 6.94301 7.29132 7.56341 8.04150 8.27581 9.24330 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.009114 B = 0.002819 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3071.308437 B = 9929.201207 C =12402.769765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.075 4.075 3 Si 0.976 3.024 4 H -0.273 1.273 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.252 4.252 8 H 0.075 0.925 9 N -0.748 5.748 10 C 0.153 3.847 11 C -0.118 4.118 12 C 0.131 3.869 13 N -0.592 5.592 14 C 0.101 3.899 15 C -0.109 4.109 16 C -0.130 4.130 17 C -0.126 4.126 18 C -0.126 4.126 19 C -0.112 4.112 20 C 0.495 3.505 21 O -0.569 6.569 22 C 0.082 3.918 23 N -0.298 5.298 24 C 0.182 3.818 25 N -0.345 5.345 26 N -0.119 5.119 27 N -0.095 5.095 28 H 0.253 0.747 29 H 0.373 0.627 30 H 0.006 0.994 31 H 0.034 0.966 32 H 0.076 0.924 33 H 0.037 0.963 34 H 0.059 0.941 35 H 0.109 0.891 36 H 0.099 0.901 37 H 0.119 0.881 38 H 0.069 0.931 39 H 0.089 0.911 40 H 0.047 0.953 41 H 0.070 0.930 42 H 0.050 0.950 43 H 0.055 0.945 44 H 0.072 0.928 45 H 0.068 0.932 46 H 0.089 0.911 47 H 0.200 0.800 48 H 0.166 0.834 49 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.754 -29.144 -10.804 31.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.267 4.267 3 Si 0.804 3.196 4 H -0.199 1.199 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.384 4.384 8 H 0.093 0.907 9 N -0.390 5.390 10 C 0.026 3.974 11 C -0.157 4.157 12 C 0.008 3.992 13 N -0.323 5.323 14 C -0.020 4.020 15 C -0.129 4.129 16 C -0.167 4.167 17 C -0.163 4.163 18 C -0.163 4.163 19 C -0.150 4.150 20 C 0.281 3.719 21 O -0.447 6.447 22 C -0.041 4.041 23 N -0.101 5.101 24 C -0.116 4.116 25 N -0.193 5.193 26 N -0.113 5.113 27 N -0.083 5.083 28 H 0.061 0.939 29 H 0.205 0.795 30 H 0.024 0.976 31 H 0.052 0.948 32 H 0.095 0.905 33 H 0.056 0.944 34 H 0.078 0.922 35 H 0.127 0.873 36 H 0.118 0.882 37 H 0.137 0.863 38 H 0.088 0.912 39 H 0.107 0.893 40 H 0.066 0.934 41 H 0.089 0.911 42 H 0.069 0.931 43 H 0.074 0.926 44 H 0.091 0.909 45 H 0.087 0.913 46 H 0.108 0.892 47 H 0.217 0.783 48 H 0.183 0.817 49 H 0.311 0.689 Dipole moment (debyes) X Y Z Total from point charges -3.570 -29.066 -9.150 30.680 hybrid contribution 0.033 1.556 -0.431 1.615 sum -3.536 -27.510 -9.581 29.345 Atomic orbital electron populations 1.69806 1.06635 1.26310 1.59249 1.25609 0.96482 1.01236 1.03395 0.85183 0.77249 0.78901 0.78262 1.19869 1.21839 1.20735 1.19623 0.91542 0.85465 1.41757 0.90731 1.42565 1.05621 1.01323 1.89537 1.20705 0.94165 0.84938 0.97567 1.21827 0.98450 0.93911 1.01530 1.21267 0.90810 0.83696 1.03471 1.47905 1.45105 1.33366 1.05959 1.22181 0.97670 0.96319 0.85848 1.22581 0.99583 0.94740 0.95974 1.22685 1.01450 0.94868 0.97676 1.22114 1.00570 0.98564 0.95078 1.22125 1.00561 0.97414 0.96227 1.22344 1.01659 0.95655 0.95370 1.20822 0.82795 0.84669 0.83616 1.90878 1.57713 1.58699 1.37384 1.22986 1.05170 1.00795 0.75121 1.48411 1.05539 1.44826 1.11284 1.28815 0.93986 0.99117 0.89666 1.74874 1.09240 1.19473 1.15690 1.78635 0.99182 1.17386 1.16113 1.78923 1.19727 1.15662 0.93944 0.93854 0.79517 0.97618 0.94830 0.90491 0.94438 0.92246 0.87276 0.88242 0.86294 0.91205 0.89265 0.93404 0.91135 0.93081 0.92642 0.90933 0.91350 0.89214 0.78295 0.81744 0.68937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.12 13.06 21.65 0.28 -59.84 16 2 C -0.07 -4.39 5.50 84.86 0.47 -3.92 16 3 Si 0.98 46.76 29.55 68.60 2.03 48.78 16 4 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 5 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 6 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 7 C -0.25 -14.52 9.99 84.03 0.84 -13.68 16 8 H 0.07 4.12 7.83 -2.91 -0.02 4.10 16 9 N -0.75 -39.27 5.60 -343.44 -1.92 -41.19 16 10 C 0.15 6.20 6.26 86.38 0.54 6.74 16 11 C -0.12 -3.63 5.64 30.60 0.17 -3.46 16 12 C 0.13 2.97 5.39 86.38 0.47 3.43 16 13 N -0.59 -9.36 2.45 -821.81 -2.01 -11.37 16 14 C 0.10 0.61 4.88 86.38 0.42 1.03 16 15 C -0.11 -0.72 3.08 -9.47 -0.03 -0.75 16 16 C -0.13 -0.87 4.83 31.70 0.15 -0.72 16 17 C -0.13 -0.93 6.80 31.32 0.21 -0.72 16 18 C -0.13 -0.77 6.80 31.32 0.21 -0.56 16 19 C -0.11 -0.49 6.27 31.67 0.20 -0.29 16 20 C 0.49 9.92 7.48 87.66 0.66 10.57 16 21 O -0.57 -19.31 15.34 -3.03 -0.05 -19.36 16 22 C 0.08 0.72 5.34 85.63 0.46 1.18 16 23 N -0.30 -5.38 3.19 -355.57 -1.13 -6.51 16 24 C 0.18 2.67 12.79 180.27 2.31 4.98 16 25 N -0.35 -8.94 12.36 -60.30 -0.75 -9.69 16 26 N -0.12 -3.79 13.43 37.01 0.50 -3.29 16 27 N -0.10 -2.75 12.31 37.02 0.46 -2.29 16 28 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 29 H 0.37 20.67 7.67 -92.71 -0.71 19.96 16 30 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.06 1.69 7.52 -2.39 -0.02 1.67 16 35 H 0.11 1.89 7.94 -2.39 -0.02 1.87 16 36 H 0.10 0.57 8.13 -2.39 -0.02 0.55 16 37 H 0.12 -0.22 5.99 -2.39 -0.01 -0.23 16 38 H 0.07 0.73 8.03 -2.39 -0.02 0.71 16 39 H 0.09 0.13 5.67 -2.39 -0.01 0.12 16 40 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 41 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 42 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 43 H 0.05 0.43 8.14 -2.39 -0.02 0.42 16 44 H 0.07 0.34 8.14 -2.38 -0.02 0.32 16 45 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 46 H 0.09 0.07 8.05 -2.39 -0.02 0.05 16 47 H 0.20 -0.65 7.37 -2.39 -0.02 -0.67 16 48 H 0.17 0.63 4.23 -2.39 -0.01 0.62 16 49 H 0.30 -0.03 8.06 -2.91 -0.02 -0.05 16 Total: -1.00 -92.54 395.88 4.73 -87.81 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: 0.25 Total: 13.11 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: 7.07 Total: 3.84 kcal Atomic # 7 Polarization: -129.61 SS G_CDS: -4.58 Total: -134.19 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -0.05 Total: -19.36 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.78 kcal Total: -92.54 4.73 -87.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177218315.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.724 kcal (2) G-P(sol) polarization free energy of solvation -92.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds