Wall clock time and date at job start Tue Mar 31 2020 19:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 120.00142 * 2 1 4 4 H 1.48500 * 109.47129 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46890 * 299.99542 * 3 2 1 6 6 H 1.48493 * 109.47133 * 60.00074 * 3 2 1 7 7 C 1.38813 * 119.99946 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00368 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99958 * 359.97438 * 7 2 1 10 10 C 1.46506 * 120.00097 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47255 * 180.02562 * 10 9 7 12 12 C 1.52992 * 109.47071 * 180.02562 * 11 10 9 13 13 N 1.46503 * 109.47249 * 180.02562 * 12 11 10 14 14 C 1.46507 * 119.99702 * 269.99643 * 13 12 11 15 15 C 1.52990 * 109.47501 * 279.94868 * 14 13 12 16 16 C 1.54266 * 110.03204 * 303.96453 * 15 14 13 17 17 C 1.54971 * 104.16091 * 217.13445 * 16 15 14 18 18 C 1.54883 * 102.77418 * 37.88663 * 17 16 15 19 19 C 1.53873 * 110.03470 * 186.74410 * 15 14 13 20 20 C 1.34774 * 120.00304 * 89.99255 * 13 12 11 21 21 O 1.21281 * 119.99826 * 6.27813 * 20 13 12 22 22 C 1.50695 * 120.00000 * 185.99370 * 20 13 12 23 23 N 1.46500 * 109.46987 * 173.59602 * 22 20 13 24 24 N 1.28880 * 125.44666 * 90.00511 * 23 22 20 25 25 C 1.31048 * 107.91924 * 179.97438 * 24 23 22 26 26 N 1.33316 * 106.89540 * 0.02562 * 25 24 23 27 27 N 1.28781 * 125.45220 * 269.69559 * 23 22 20 28 28 H 0.96999 * 119.99896 * 0.02562 * 1 2 3 29 29 H 0.96996 * 119.99821 * 0.02562 * 9 7 2 30 30 H 1.09000 * 109.46330 * 60.00481 * 10 9 7 31 31 H 1.08997 * 109.47051 * 300.00969 * 10 9 7 32 32 H 1.08992 * 109.47068 * 60.00197 * 11 10 9 33 33 H 1.09004 * 109.46855 * 300.00210 * 11 10 9 34 34 H 1.09001 * 109.47456 * 59.99666 * 12 11 10 35 35 H 1.08996 * 109.47216 * 299.99403 * 12 11 10 36 36 H 1.09006 * 109.47174 * 39.95093 * 14 13 12 37 37 H 1.09001 * 109.46874 * 159.94553 * 14 13 12 38 38 H 1.09007 * 110.01997 * 65.35264 * 15 14 13 39 39 H 1.08996 * 110.48485 * 335.77901 * 16 15 14 40 40 H 1.08999 * 110.48768 * 98.42606 * 16 15 14 41 41 H 1.09003 * 110.71705 * 279.57554 * 17 16 15 42 42 H 1.08992 * 110.92160 * 156.29422 * 17 16 15 43 43 H 1.09007 * 110.48681 * 203.40899 * 18 17 16 44 44 H 1.08997 * 110.60203 * 80.81721 * 18 17 16 45 45 H 1.08999 * 110.03393 * 238.56655 * 19 15 14 46 46 H 1.08987 * 110.03287 * 359.97438 * 19 15 14 47 47 H 1.09001 * 109.47351 * 293.59762 * 22 20 13 48 48 H 1.09008 * 109.47142 * 53.59884 * 22 20 13 49 49 H 1.07989 * 126.55165 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 2.0580 -3.6569 0.0016 11 6 1.0638 -4.8198 0.0022 12 6 1.8287 -6.1447 0.0029 13 7 0.8767 -7.2583 0.0029 14 6 0.4004 -7.8147 1.2717 15 6 1.4546 -8.7675 1.8386 16 6 1.7870 -9.8633 0.8048 17 6 1.9961 -11.1394 1.6589 18 6 0.9156 -10.9959 2.7593 19 6 0.9012 -9.4871 3.0810 20 6 0.4391 -7.7707 -1.1642 21 8 0.9171 -7.3888 -2.2114 22 6 -0.6397 -8.8229 -1.1678 23 7 -1.0440 -9.1031 -2.5477 24 7 -0.5185 -9.9963 -3.3139 25 6 -1.1389 -9.9536 -4.4674 26 7 -2.0638 -8.9981 -4.3748 27 7 -1.9852 -8.5001 -3.1874 28 1 -0.4850 0.8400 -0.0004 29 1 0.3556 -2.3880 0.0016 30 1 2.6852 -3.7141 0.8912 31 1 2.6841 -3.7149 -0.8887 32 1 0.4368 -4.7622 -0.8875 33 1 0.4374 -4.7617 0.8925 34 1 2.4555 -6.2020 0.8928 35 1 2.4552 -6.2030 -0.8871 36 1 0.2239 -7.0051 1.9800 37 1 -0.5287 -8.3593 1.1036 38 1 2.3568 -8.2137 2.0988 39 1 0.9560 -9.9995 0.1129 40 1 2.6988 -9.6124 0.2628 41 1 2.9942 -11.1510 2.0968 42 1 1.8259 -12.0373 1.0651 43 1 1.1919 -11.5716 3.6427 44 1 -0.0571 -11.3155 2.3856 45 1 1.5351 -9.2833 3.9439 46 1 -0.1183 -9.1572 3.2803 47 1 -0.2591 -9.7352 -0.7084 48 1 -1.4999 -8.4633 -0.6030 49 1 -0.9385 -10.5734 -5.3287 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177319195.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:28 Heat of formation + Delta-G solvation = 103.965402 kcal Electronic energy + Delta-G solvation = -29511.126577 eV Core-core repulsion = 25511.881056 eV Total energy + Delta-G solvation = -3999.245521 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.49948 -40.71065 -38.58369 -36.37703 -35.19181 -34.89520 -33.26221 -32.46901 -30.59709 -30.29583 -29.03091 -28.88607 -25.68022 -25.15286 -24.13481 -23.55873 -22.53682 -21.21721 -21.01815 -20.37760 -19.57607 -18.40413 -17.93013 -17.07418 -16.76141 -16.47754 -16.22694 -15.91115 -15.46617 -15.08806 -14.64986 -14.53778 -14.20585 -13.97243 -13.89572 -13.80921 -13.41716 -13.13929 -12.95689 -12.71994 -12.26605 -12.08814 -11.99606 -11.61630 -11.54153 -11.47169 -11.38049 -11.30630 -11.15276 -10.98913 -10.96341 -10.90260 -10.85847 -10.82083 -10.74502 -10.47044 -10.09794 -9.97926 -9.72504 -8.93450 -8.87161 -6.91691 -5.75441 -3.04460 0.98266 1.50600 2.08901 2.11037 2.61300 3.44312 3.49633 3.52163 3.73685 3.75312 4.06978 4.14191 4.15752 4.22567 4.31241 4.55112 4.60462 4.66152 4.83853 4.97351 5.01831 5.06309 5.15304 5.21292 5.24716 5.34321 5.38969 5.49869 5.50980 5.51473 5.54806 5.56032 5.60087 5.69178 5.71103 5.81261 5.86080 5.89634 5.94200 5.98720 6.22317 6.33128 6.34322 6.80834 6.81182 6.97761 7.68525 7.71291 8.18443 8.43269 9.54311 10.12113 10.46583 11.47616 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.009598 B = 0.002821 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2916.452070 B = 9922.734185 C =12224.157093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.239 4.239 8 H 0.071 0.929 9 N -0.733 5.733 10 C 0.157 3.843 11 C -0.140 4.140 12 C 0.120 3.880 13 N -0.598 5.598 14 C 0.105 3.895 15 C -0.112 4.112 16 C -0.124 4.124 17 C -0.125 4.125 18 C -0.126 4.126 19 C -0.119 4.119 20 C 0.506 3.494 21 O -0.512 6.512 22 C 0.101 3.899 23 N -0.127 5.127 24 N -0.302 5.302 25 C 0.144 3.856 26 N -0.283 5.283 27 N -0.048 5.048 28 H 0.255 0.745 29 H 0.384 0.616 30 H 0.019 0.981 31 H 0.019 0.981 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.060 0.940 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.068 0.932 46 H 0.069 0.931 47 H 0.149 0.851 48 H 0.145 0.855 49 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.412 -29.486 5.081 29.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.371 4.371 8 H 0.089 0.911 9 N -0.377 5.377 10 C 0.029 3.971 11 C -0.179 4.179 12 C -0.002 4.002 13 N -0.331 5.331 14 C -0.018 4.018 15 C -0.131 4.131 16 C -0.161 4.161 17 C -0.163 4.163 18 C -0.163 4.163 19 C -0.157 4.157 20 C 0.290 3.710 21 O -0.386 6.386 22 C -0.023 4.023 23 N -0.038 5.038 24 N -0.151 5.151 25 C -0.159 4.159 26 N -0.154 5.154 27 N -0.042 5.042 28 H 0.065 0.935 29 H 0.217 0.783 30 H 0.037 0.963 31 H 0.037 0.963 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.110 0.890 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.087 0.913 46 H 0.088 0.912 47 H 0.166 0.834 48 H 0.163 0.837 49 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -0.283 -28.680 4.894 29.096 hybrid contribution 0.418 0.602 -0.244 0.773 sum 0.135 -28.078 4.651 28.461 Atomic orbital electron populations 1.69673 1.05133 1.25552 1.57835 1.24759 0.95548 0.97748 1.03028 0.86104 0.78774 0.84056 0.77199 1.20534 1.21818 1.21850 1.19280 0.91069 0.84139 1.42579 0.91109 1.42349 1.05891 0.99993 1.89510 1.20519 0.93318 0.85430 0.97826 1.22069 0.99610 0.93642 1.02544 1.21566 0.90785 0.84182 1.03651 1.47854 1.45819 1.34519 1.04888 1.21959 0.96515 0.97717 0.85622 1.22245 0.99312 0.96194 0.95388 1.22593 1.01546 0.94660 0.97287 1.22511 0.99268 0.97536 0.96976 1.22375 0.99099 0.96093 0.98765 1.22158 1.01516 0.94880 0.97181 1.20083 0.83474 0.82758 0.84700 1.90842 1.56659 1.60153 1.30938 1.22444 1.01191 1.02683 0.76020 1.49517 1.20547 1.20648 1.13081 1.74680 1.23305 1.13131 1.03998 1.27346 0.92730 0.99009 0.96827 1.75900 1.21231 1.09681 1.08638 1.79057 1.07486 1.17221 1.00433 0.93546 0.78303 0.96335 0.96277 0.91625 0.91725 0.89942 0.89483 0.89038 0.90227 0.89893 0.92182 0.91260 0.91342 0.91547 0.91614 0.91650 0.91271 0.91246 0.83422 0.83733 0.74784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.85 13.06 55.49 0.72 -28.13 16 2 C -0.01 -0.44 5.50 -17.43 -0.10 -0.54 16 3 Si 0.91 22.81 29.55 -169.99 -5.02 17.79 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 6 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 7 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 8 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 9 N -0.73 -19.18 5.60 -59.91 -0.34 -19.52 16 10 C 0.16 3.19 6.26 -4.04 -0.03 3.17 16 11 C -0.14 -2.24 5.65 -26.74 -0.15 -2.39 16 12 C 0.12 1.47 5.45 -4.04 -0.02 1.45 16 13 N -0.60 -5.89 2.17 -173.69 -0.38 -6.27 16 14 C 0.10 0.65 4.71 -4.04 -0.02 0.63 16 15 C -0.11 -0.62 3.19 -89.51 -0.29 -0.91 16 16 C -0.12 -0.74 5.61 -25.03 -0.14 -0.89 16 17 C -0.13 -0.64 6.91 -24.70 -0.17 -0.82 16 18 C -0.13 -0.55 6.83 -25.07 -0.17 -0.72 16 19 C -0.12 -0.53 6.46 -25.61 -0.17 -0.70 16 20 C 0.51 6.01 6.92 -10.99 -0.08 5.93 16 21 O -0.51 -8.73 15.99 5.56 0.09 -8.65 16 22 C 0.10 0.86 5.38 -5.20 -0.03 0.83 16 23 N -0.13 -1.53 3.49 -11.72 -0.04 -1.57 16 24 N -0.30 -3.59 12.13 29.34 0.36 -3.23 16 25 C 0.14 1.55 13.26 -91.58 -1.21 0.34 16 26 N -0.28 -3.89 12.50 29.33 0.37 -3.53 16 27 N -0.05 -0.68 13.25 60.35 0.80 0.12 16 28 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 29 H 0.38 10.55 7.67 -40.82 -0.31 10.24 16 30 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.08 0.83 7.88 -51.93 -0.41 0.42 16 35 H 0.09 1.23 7.34 -51.93 -0.38 0.84 16 36 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.31 6.00 -51.93 -0.31 -0.01 16 38 H 0.08 0.53 7.95 -51.92 -0.41 0.12 16 39 H 0.06 0.34 3.98 -51.93 -0.21 0.14 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 43 H 0.07 0.27 8.14 -51.92 -0.42 -0.15 16 44 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 45 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.07 0.26 7.67 -51.94 -0.40 -0.14 16 47 H 0.15 0.82 5.10 -51.93 -0.26 0.55 16 48 H 0.15 0.80 7.37 -51.92 -0.38 0.42 16 49 H 0.24 1.35 8.06 -52.49 -0.42 0.92 16 LS Contribution 395.90 15.07 5.97 5.97 Total: -1.00 -37.79 395.90 -7.89 -45.68 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -7.70 Total: 3.00 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: -2.72 Total: -1.65 kcal Atomic # 7 Polarization: -63.63 SS G_CDS: 1.49 Total: -62.14 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: 0.09 Total: -8.65 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.79 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -37.79 -7.89 -45.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177319195.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.642 kcal (2) G-P(sol) polarization free energy of solvation -37.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds