Wall clock time and date at job start Tue Mar 31 2020 19:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 120.00142 * 2 1 4 4 H 1.48500 * 109.47129 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46890 * 299.99542 * 3 2 1 6 6 H 1.48493 * 109.47133 * 60.00074 * 3 2 1 7 7 C 1.38813 * 119.99946 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00368 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99958 * 359.97438 * 7 2 1 10 10 C 1.46506 * 120.00097 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47255 * 180.02562 * 10 9 7 12 12 C 1.52992 * 109.47071 * 180.02562 * 11 10 9 13 13 N 1.46503 * 109.47249 * 180.02562 * 12 11 10 14 14 C 1.46507 * 119.99702 * 269.99643 * 13 12 11 15 15 C 1.52990 * 109.47501 * 279.94868 * 14 13 12 16 16 C 1.54266 * 110.03204 * 303.96453 * 15 14 13 17 17 C 1.54971 * 104.16091 * 217.13445 * 16 15 14 18 18 C 1.54883 * 102.77418 * 37.88663 * 17 16 15 19 19 C 1.53873 * 110.03470 * 186.74410 * 15 14 13 20 20 C 1.34774 * 120.00304 * 89.99255 * 13 12 11 21 21 O 1.21281 * 119.99826 * 6.27813 * 20 13 12 22 22 C 1.50695 * 120.00000 * 185.99370 * 20 13 12 23 23 N 1.46500 * 109.46987 * 173.59602 * 22 20 13 24 24 N 1.28880 * 125.44666 * 90.00511 * 23 22 20 25 25 C 1.31048 * 107.91924 * 179.97438 * 24 23 22 26 26 N 1.33316 * 106.89540 * 0.02562 * 25 24 23 27 27 N 1.28781 * 125.45220 * 269.69559 * 23 22 20 28 28 H 0.96999 * 119.99896 * 0.02562 * 1 2 3 29 29 H 0.96996 * 119.99821 * 0.02562 * 9 7 2 30 30 H 1.09000 * 109.46330 * 60.00481 * 10 9 7 31 31 H 1.08997 * 109.47051 * 300.00969 * 10 9 7 32 32 H 1.08992 * 109.47068 * 60.00197 * 11 10 9 33 33 H 1.09004 * 109.46855 * 300.00210 * 11 10 9 34 34 H 1.09001 * 109.47456 * 59.99666 * 12 11 10 35 35 H 1.08996 * 109.47216 * 299.99403 * 12 11 10 36 36 H 1.09006 * 109.47174 * 39.95093 * 14 13 12 37 37 H 1.09001 * 109.46874 * 159.94553 * 14 13 12 38 38 H 1.09007 * 110.01997 * 65.35264 * 15 14 13 39 39 H 1.08996 * 110.48485 * 335.77901 * 16 15 14 40 40 H 1.08999 * 110.48768 * 98.42606 * 16 15 14 41 41 H 1.09003 * 110.71705 * 279.57554 * 17 16 15 42 42 H 1.08992 * 110.92160 * 156.29422 * 17 16 15 43 43 H 1.09007 * 110.48681 * 203.40899 * 18 17 16 44 44 H 1.08997 * 110.60203 * 80.81721 * 18 17 16 45 45 H 1.08999 * 110.03393 * 238.56655 * 19 15 14 46 46 H 1.08987 * 110.03287 * 359.97438 * 19 15 14 47 47 H 1.09001 * 109.47351 * 293.59762 * 22 20 13 48 48 H 1.09008 * 109.47142 * 53.59884 * 22 20 13 49 49 H 1.07989 * 126.55165 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 2.0580 -3.6569 0.0016 11 6 1.0638 -4.8198 0.0022 12 6 1.8287 -6.1447 0.0029 13 7 0.8767 -7.2583 0.0029 14 6 0.4004 -7.8147 1.2717 15 6 1.4546 -8.7675 1.8386 16 6 1.7870 -9.8633 0.8048 17 6 1.9961 -11.1394 1.6589 18 6 0.9156 -10.9959 2.7593 19 6 0.9012 -9.4871 3.0810 20 6 0.4391 -7.7707 -1.1642 21 8 0.9171 -7.3888 -2.2114 22 6 -0.6397 -8.8229 -1.1678 23 7 -1.0440 -9.1031 -2.5477 24 7 -0.5185 -9.9963 -3.3139 25 6 -1.1389 -9.9536 -4.4674 26 7 -2.0638 -8.9981 -4.3748 27 7 -1.9852 -8.5001 -3.1874 28 1 -0.4850 0.8400 -0.0004 29 1 0.3556 -2.3880 0.0016 30 1 2.6852 -3.7141 0.8912 31 1 2.6841 -3.7149 -0.8887 32 1 0.4368 -4.7622 -0.8875 33 1 0.4374 -4.7617 0.8925 34 1 2.4555 -6.2020 0.8928 35 1 2.4552 -6.2030 -0.8871 36 1 0.2239 -7.0051 1.9800 37 1 -0.5287 -8.3593 1.1036 38 1 2.3568 -8.2137 2.0988 39 1 0.9560 -9.9995 0.1129 40 1 2.6988 -9.6124 0.2628 41 1 2.9942 -11.1510 2.0968 42 1 1.8259 -12.0373 1.0651 43 1 1.1919 -11.5716 3.6427 44 1 -0.0571 -11.3155 2.3856 45 1 1.5351 -9.2833 3.9439 46 1 -0.1183 -9.1572 3.2803 47 1 -0.2591 -9.7352 -0.7084 48 1 -1.4999 -8.4633 -0.6030 49 1 -0.9385 -10.5734 -5.3287 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177319195.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:27 Heat of formation + Delta-G solvation = 78.736723 kcal Electronic energy + Delta-G solvation = -29512.220574 eV Core-core repulsion = 25511.881056 eV Total energy + Delta-G solvation = -4000.339519 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -45.39178 -41.55786 -39.16833 -37.59921 -36.39157 -36.07784 -34.26188 -34.04979 -32.06579 -30.95800 -30.06990 -29.43954 -27.11827 -25.81847 -25.08635 -24.96972 -23.83267 -22.57144 -21.62145 -20.97509 -20.30395 -19.22587 -19.16721 -18.73334 -17.65488 -17.33430 -17.09141 -16.54599 -16.45629 -16.21353 -15.97497 -15.62754 -15.37165 -15.15853 -14.98571 -14.70850 -14.49010 -14.35338 -13.80401 -13.57900 -13.51539 -13.12700 -13.03047 -12.82692 -12.75965 -12.49295 -12.28872 -12.08752 -12.07383 -12.02374 -11.95338 -11.88691 -11.86320 -11.84308 -11.76133 -11.72973 -11.42552 -11.27250 -10.98695 -10.93887 -9.83863 -9.05302 -7.98833 -5.28823 0.05492 0.74288 1.21085 1.23997 1.45132 1.46845 1.56887 1.77853 2.53511 3.00797 3.05801 3.34944 3.43792 3.52039 3.71566 3.77947 3.81093 3.84463 3.90770 3.98178 4.14053 4.27604 4.41359 4.48411 4.53437 4.57022 4.60978 4.66852 4.68595 4.74014 4.75936 4.81534 4.89039 4.90370 4.94497 5.02344 5.07734 5.17171 5.21675 5.26152 5.33333 5.35127 5.44380 5.45828 5.52555 5.56868 6.12186 6.23482 6.80052 7.27343 7.29175 8.04135 8.27233 9.25101 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.009598 B = 0.002821 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2916.452070 B = 9922.734185 C =12224.157093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.077 4.077 3 Si 0.977 3.023 4 H -0.265 1.265 5 H -0.294 1.294 6 H -0.288 1.288 7 C -0.249 4.249 8 H 0.077 0.923 9 N -0.749 5.749 10 C 0.155 3.845 11 C -0.122 4.122 12 C 0.130 3.870 13 N -0.589 5.589 14 C 0.097 3.903 15 C -0.106 4.106 16 C -0.124 4.124 17 C -0.125 4.125 18 C -0.124 4.124 19 C -0.116 4.116 20 C 0.503 3.497 21 O -0.573 6.573 22 C 0.097 3.903 23 N -0.124 5.124 24 N -0.312 5.312 25 C 0.148 3.852 26 N -0.312 5.312 27 N -0.077 5.077 28 H 0.252 0.748 29 H 0.373 0.627 30 H 0.036 0.964 31 H 0.009 0.991 32 H 0.035 0.965 33 H 0.076 0.924 34 H 0.111 0.889 35 H 0.065 0.935 36 H 0.099 0.901 37 H 0.111 0.889 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.048 0.952 41 H 0.062 0.938 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.075 0.925 45 H 0.067 0.933 46 H 0.083 0.917 47 H 0.181 0.819 48 H 0.179 0.821 49 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.201 -31.094 6.694 31.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.269 4.269 3 Si 0.805 3.195 4 H -0.189 1.189 5 H -0.222 1.222 6 H -0.215 1.215 7 C -0.380 4.380 8 H 0.095 0.905 9 N -0.392 5.392 10 C 0.028 3.972 11 C -0.161 4.161 12 C 0.007 3.993 13 N -0.320 5.320 14 C -0.024 4.024 15 C -0.126 4.126 16 C -0.162 4.162 17 C -0.163 4.163 18 C -0.161 4.161 19 C -0.154 4.154 20 C 0.288 3.712 21 O -0.452 6.452 22 C -0.025 4.025 23 N -0.036 5.036 24 N -0.162 5.162 25 C -0.154 4.154 26 N -0.183 5.183 27 N -0.071 5.071 28 H 0.061 0.939 29 H 0.204 0.796 30 H 0.054 0.946 31 H 0.027 0.973 32 H 0.054 0.946 33 H 0.094 0.906 34 H 0.129 0.871 35 H 0.083 0.917 36 H 0.118 0.882 37 H 0.129 0.871 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.067 0.933 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.094 0.906 45 H 0.086 0.914 46 H 0.102 0.898 47 H 0.198 0.802 48 H 0.196 0.804 49 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges -0.053 -30.334 6.556 31.035 hybrid contribution 0.427 1.021 -0.727 1.324 sum 0.374 -29.313 5.829 29.890 Atomic orbital electron populations 1.69829 1.06710 1.26145 1.59399 1.25636 0.96477 1.01320 1.03490 0.85030 0.78230 0.79457 0.76779 1.18913 1.22156 1.21531 1.19697 0.91570 0.85350 1.41426 0.90543 1.42602 1.05647 1.01397 1.89515 1.20693 0.94020 0.84713 0.97805 1.21861 0.98573 0.94070 1.01552 1.21308 0.90741 0.83235 1.03990 1.47863 1.44820 1.33309 1.05966 1.22332 0.97891 0.98385 0.83813 1.22179 0.98834 0.95814 0.95740 1.22579 1.00740 0.95403 0.97449 1.22506 0.99455 0.97128 0.97193 1.22381 0.99199 0.96043 0.98488 1.22141 1.02220 0.94743 0.96274 1.20662 0.83496 0.82837 0.84157 1.90818 1.58821 1.62412 1.33119 1.22849 1.01351 1.03081 0.75196 1.49796 1.19885 1.20099 1.13857 1.74673 1.23558 1.13463 1.04515 1.28210 0.91313 0.98297 0.97609 1.75855 1.22723 1.10853 1.08842 1.78989 1.08800 1.18190 1.01104 0.93903 0.79584 0.94606 0.97283 0.94616 0.90554 0.87100 0.91654 0.88226 0.87132 0.90749 0.91745 0.93289 0.91901 0.91314 0.91366 0.90596 0.91420 0.89822 0.80214 0.80400 0.70791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.86 13.06 21.65 0.28 -60.58 16 2 C -0.08 -4.55 5.50 84.86 0.47 -4.08 16 3 Si 0.98 47.03 29.55 68.60 2.03 49.05 16 4 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 5 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 6 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 7 C -0.25 -14.35 9.99 84.03 0.84 -13.51 16 8 H 0.08 4.23 7.83 -2.91 -0.02 4.20 16 9 N -0.75 -39.67 5.60 -343.45 -1.92 -41.59 16 10 C 0.15 6.28 6.26 86.38 0.54 6.82 16 11 C -0.12 -3.88 5.65 30.59 0.17 -3.71 16 12 C 0.13 3.10 5.45 86.38 0.47 3.57 16 13 N -0.59 -10.77 2.17 -821.83 -1.78 -12.55 16 14 C 0.10 0.90 4.71 86.37 0.41 1.31 16 15 C -0.11 -0.91 3.19 -10.07 -0.03 -0.94 16 16 C -0.12 -1.27 5.61 31.70 0.18 -1.09 16 17 C -0.13 -1.04 6.91 31.91 0.22 -0.82 16 18 C -0.12 -0.72 6.83 31.67 0.22 -0.50 16 19 C -0.12 -0.67 6.46 31.32 0.20 -0.47 16 20 C 0.50 11.58 6.92 87.66 0.61 12.18 16 21 O -0.57 -20.08 15.99 -3.03 -0.05 -20.13 16 22 C 0.10 1.46 5.38 85.63 0.46 1.92 16 23 N -0.12 -2.87 3.49 -190.98 -0.67 -3.54 16 24 N -0.31 -7.09 12.13 -61.10 -0.74 -7.83 16 25 C 0.15 3.04 13.26 180.68 2.40 5.43 16 26 N -0.31 -8.52 12.50 -61.11 -0.76 -9.28 16 27 N -0.08 -2.18 13.25 37.02 0.49 -1.69 16 28 H 0.25 15.22 8.31 -92.71 -0.77 14.45 16 29 H 0.37 20.99 7.67 -92.71 -0.71 20.27 16 30 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.08 2.25 8.14 -2.38 -0.02 2.23 16 34 H 0.11 2.02 7.88 -2.39 -0.02 2.00 16 35 H 0.06 1.88 7.34 -2.39 -0.02 1.86 16 36 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 37 H 0.11 0.37 6.00 -2.39 -0.01 0.36 16 38 H 0.07 0.79 7.95 -2.38 -0.02 0.77 16 39 H 0.06 0.57 3.98 -2.39 -0.01 0.56 16 40 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 43 H 0.07 0.39 8.14 -2.38 -0.02 0.37 16 44 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 45 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 46 H 0.08 0.28 7.67 -2.39 -0.02 0.26 16 47 H 0.18 1.44 5.10 -2.39 -0.01 1.43 16 48 H 0.18 1.41 7.37 -2.38 -0.02 1.39 16 49 H 0.28 2.60 8.06 -2.92 -0.02 2.57 16 Total: -1.00 -84.89 395.90 4.27 -80.62 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: 0.25 Total: 21.40 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: 7.15 Total: 6.12 kcal Atomic # 7 Polarization: -131.96 SS G_CDS: -5.11 Total: -137.07 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: -0.05 Total: -20.13 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 2.03 Total: 49.05 kcal Total: -84.89 4.27 -80.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177319195.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.361 kcal (2) G-P(sol) polarization free energy of solvation -84.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds