Wall clock time and date at job start Tue Mar 31 2020 20:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47361 * 2 1 4 4 C 1.52996 * 109.47184 * 239.99571 * 2 1 3 5 5 N 1.46501 * 109.46806 * 120.00130 * 2 1 3 6 6 N 1.28718 * 125.32139 * 359.96718 * 5 2 1 7 7 N 1.28981 * 108.98704 * 180.02562 * 6 5 2 8 8 C 1.34184 * 107.25522 * 0.02562 * 7 6 5 9 9 C 1.48008 * 126.70099 * 180.02562 * 8 7 6 10 10 O 1.21538 * 119.99800 * 187.53801 * 9 8 7 11 11 N 1.34780 * 119.99771 * 7.53705 * 9 8 7 12 12 C 1.46923 * 120.62658 * 186.73360 * 11 9 8 13 13 C 1.52764 * 109.00409 * 233.58249 * 12 11 9 14 14 C 1.53038 * 109.38267 * 305.58614 * 13 12 11 15 15 C 1.53003 * 109.44579 * 181.25267 * 14 13 12 16 16 N 1.46501 * 109.46948 * 64.94362 * 15 14 13 17 17 C 1.36940 * 119.99635 * 179.97438 * 16 15 14 18 18 H 1.07992 * 120.00420 * 359.97438 * 17 16 15 19 19 C 1.38819 * 119.99374 * 179.97438 * 17 16 15 20 20 N 1.31613 * 120.00579 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99502 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47276 * 60.00026 * 21 19 17 23 23 H 1.48499 * 109.46909 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47053 * 299.99743 * 21 19 17 25 25 C 1.53039 * 109.53862 * 61.24537 * 14 13 12 26 26 C 1.46924 * 120.63263 * 7.00933 * 11 9 8 27 27 N 1.28877 * 125.31961 * 180.02562 * 5 2 1 28 28 H 1.08995 * 109.47231 * 300.00552 * 1 2 3 29 29 H 1.09004 * 109.46893 * 60.00125 * 1 2 3 30 30 H 1.09001 * 109.47277 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47141 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46664 * 300.00213 * 3 2 1 33 33 H 1.08998 * 109.46974 * 59.99275 * 3 2 1 34 34 H 1.09001 * 109.47502 * 300.00460 * 4 2 1 35 35 H 1.09004 * 109.46957 * 60.00343 * 4 2 1 36 36 H 1.09003 * 109.47422 * 179.97438 * 4 2 1 37 37 H 1.09001 * 109.58774 * 353.41522 * 12 11 9 38 38 H 1.09000 * 109.58776 * 113.84223 * 12 11 9 39 39 H 1.08999 * 109.56198 * 185.55431 * 13 12 11 40 40 H 1.08994 * 109.35980 * 65.50502 * 13 12 11 41 41 H 1.09001 * 109.46040 * 301.22060 * 14 13 12 42 42 H 1.09004 * 109.46534 * 184.93793 * 15 14 13 43 43 H 1.09000 * 109.47304 * 304.94117 * 15 14 13 44 44 H 0.96998 * 120.00181 * 359.97438 * 16 15 14 45 45 H 0.96996 * 120.00146 * 179.97438 * 20 19 17 46 46 H 1.08999 * 109.49823 * 178.68440 * 25 14 13 47 47 H 1.08997 * 109.52595 * 58.59761 * 25 14 13 48 48 H 1.08993 * 109.58535 * 246.15806 * 26 11 9 49 49 H 1.09007 * 109.58389 * 6.44055 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 2.0183 -0.6907 1.1962 6 7 1.2761 -1.2160 2.1072 7 7 2.0306 -1.7388 3.0133 8 6 3.3028 -1.5252 2.6438 9 6 4.5189 -1.9472 3.3744 10 8 5.6129 -1.5720 3.0010 11 7 4.4129 -2.7475 4.4536 12 6 5.5911 -3.0556 5.2755 13 6 5.7265 -4.5720 5.4023 14 6 4.4167 -5.1559 5.9368 15 6 4.5611 -6.6709 6.0939 16 7 5.5644 -6.9620 7.1209 17 6 5.8645 -8.2603 7.4365 18 1 5.3612 -9.0696 6.9286 19 6 6.8156 -8.5360 8.4093 20 7 7.4287 -7.5497 9.0286 21 14 7.2255 -10.3071 8.8393 22 1 7.7351 -11.0045 7.6314 23 1 8.2640 -10.3311 9.9005 24 1 6.0027 -10.9934 9.3283 25 6 3.2824 -4.8509 4.9557 26 6 3.1183 -3.3332 4.8271 27 7 3.2580 -0.8663 1.5013 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6767 -1.7490 -1.2492 35 1 1.6767 -0.2075 -2.1392 36 1 3.1301 -0.7209 -1.2494 37 1 6.4842 -2.6489 4.8010 38 1 5.4699 -2.6182 6.2665 39 1 6.5381 -4.8097 6.0899 40 1 5.9422 -4.9986 4.4228 41 1 4.1889 -4.7104 6.9052 42 1 3.6031 -7.0983 6.3904 43 1 4.8752 -7.1063 5.1453 44 1 6.0162 -6.2350 7.5774 45 1 8.0930 -7.7424 9.7086 46 1 2.3544 -5.2871 5.3255 47 1 3.5205 -5.2750 3.9803 48 1 2.7913 -2.9189 5.7807 49 1 2.3795 -3.1073 4.0580 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205345114.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:39 Heat of formation + Delta-G solvation = 110.163724 kcal Electronic energy + Delta-G solvation = -29372.017518 eV Core-core repulsion = 25373.040776 eV Total energy + Delta-G solvation = -3998.976742 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.74916 -40.18064 -38.15022 -37.69384 -35.01947 -33.84474 -33.14059 -32.54385 -30.93751 -30.36203 -28.28144 -28.20595 -27.00496 -25.48541 -24.86893 -23.66661 -22.87837 -21.83470 -21.14086 -20.47957 -19.34418 -17.78437 -17.70702 -17.17125 -16.82150 -16.28895 -15.38925 -14.92399 -14.84763 -14.71538 -14.59592 -14.26619 -13.91271 -13.73063 -13.59426 -13.51291 -13.27212 -13.14216 -13.02488 -12.83131 -12.54493 -12.49810 -12.32433 -12.17820 -12.09677 -11.84814 -11.68708 -11.34256 -11.31829 -10.98787 -10.92295 -10.78701 -10.66522 -10.47675 -10.33240 -10.16078 -10.06075 -9.89672 -9.56335 -8.82281 -8.67106 -6.86651 -5.72293 -3.00213 0.74391 1.19420 1.31600 2.56809 2.92786 3.47222 3.51370 3.52495 3.54090 3.67975 3.85960 3.96695 4.22938 4.62722 4.67660 4.78053 4.79001 4.84095 4.95347 4.99223 5.00855 5.04286 5.10620 5.13367 5.21952 5.30925 5.35524 5.43733 5.47765 5.51904 5.60859 5.68935 5.75158 5.77740 5.99730 6.02971 6.09779 6.17345 6.24636 6.34847 6.42655 6.55005 6.72859 6.86203 6.98235 7.19740 7.73888 7.76772 8.00347 8.47126 9.58052 10.16852 10.51571 11.50630 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.031057 B = 0.002024 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.345104 B =13831.158964 C =14176.960215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.176 3.824 3 C -0.161 4.161 4 C -0.161 4.161 5 N -0.124 5.124 6 N -0.058 5.058 7 N -0.256 5.256 8 C 0.135 3.865 9 C 0.612 3.388 10 O -0.515 6.515 11 N -0.583 5.583 12 C 0.113 3.887 13 C -0.124 4.124 14 C -0.095 4.095 15 C 0.158 3.842 16 N -0.732 5.732 17 C -0.238 4.238 18 H 0.069 0.931 19 C -0.015 4.015 20 N -0.934 5.934 21 Si 0.907 3.093 22 H -0.287 1.287 23 H -0.291 1.291 24 H -0.287 1.287 25 C -0.125 4.125 26 C 0.084 3.916 27 N -0.246 5.246 28 H 0.076 0.924 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.075 0.925 39 H 0.091 0.909 40 H 0.064 0.936 41 H 0.074 0.926 42 H 0.019 0.981 43 H 0.017 0.983 44 H 0.384 0.616 45 H 0.255 0.745 46 H 0.078 0.922 47 H 0.063 0.937 48 H 0.073 0.927 49 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.045 20.106 -20.778 33.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.096 3.904 3 C -0.219 4.219 4 C -0.219 4.219 5 N -0.039 5.039 6 N -0.050 5.050 7 N -0.130 5.130 8 C -0.149 4.149 9 C 0.394 3.606 10 O -0.387 6.387 11 N -0.316 5.316 12 C -0.009 4.009 13 C -0.162 4.162 14 C -0.114 4.114 15 C 0.031 3.969 16 N -0.376 5.376 17 C -0.369 4.369 18 H 0.087 0.913 19 C -0.211 4.211 20 N -0.583 5.583 21 Si 0.738 3.262 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.164 4.164 26 C -0.039 4.039 27 N -0.099 5.099 28 H 0.095 0.905 29 H 0.110 0.890 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.111 0.889 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.111 0.889 36 H 0.098 0.902 37 H 0.111 0.889 38 H 0.093 0.907 39 H 0.109 0.891 40 H 0.083 0.917 41 H 0.092 0.908 42 H 0.036 0.964 43 H 0.035 0.965 44 H 0.218 0.782 45 H 0.065 0.935 46 H 0.096 0.904 47 H 0.082 0.918 48 H 0.092 0.908 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -16.051 20.221 -21.109 33.348 hybrid contribution 0.809 -0.921 0.616 1.371 sum -15.242 19.301 -20.493 32.013 Atomic orbital electron populations 1.22115 0.89706 1.04825 1.04490 1.21547 0.96670 0.92877 0.79351 1.22265 1.03576 0.91820 1.04236 1.22269 1.03578 1.01183 0.94903 1.50740 1.00935 1.34154 1.18024 1.78904 1.21973 1.08436 0.95667 1.75996 1.00252 1.17468 1.19249 1.25349 0.94487 1.01808 0.93277 1.16195 0.84534 0.79765 0.80119 1.90837 1.25623 1.56322 1.65962 1.47909 1.11707 1.45837 1.26135 1.21786 0.87437 0.97255 0.94378 1.21858 0.99093 0.92795 1.02487 1.21339 0.94014 0.97684 0.98402 1.20668 0.92702 0.91121 0.92434 1.42370 1.45877 1.05518 1.43847 1.19189 1.17190 0.84469 1.16086 0.91340 1.24730 0.99602 0.97279 0.99474 1.69638 1.29975 1.29805 1.28879 0.86270 0.77642 0.84620 0.77667 1.21338 1.21722 1.21343 1.21912 0.99656 0.94510 1.00280 1.22563 0.84375 0.93694 1.03302 1.74999 1.02674 1.17088 1.15134 0.90455 0.89035 0.90407 0.90175 0.88900 0.91254 0.91191 0.88895 0.90180 0.88855 0.90678 0.89054 0.91740 0.90810 0.96359 0.96479 0.78240 0.93509 0.90359 0.91782 0.90829 0.86225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.54 7.90 37.16 0.29 -0.25 16 2 C 0.18 0.97 1.30 -131.82 -0.17 0.80 16 3 C -0.16 -0.69 8.66 37.16 0.32 -0.36 16 4 C -0.16 -0.71 8.66 37.16 0.32 -0.39 16 5 N -0.12 -1.22 3.72 0.52 0.00 -1.22 16 6 N -0.06 -0.65 12.21 60.35 0.74 0.09 16 7 N -0.26 -3.25 9.07 32.10 0.29 -2.96 16 8 C 0.13 1.86 7.80 -156.25 -1.22 0.64 16 9 C 0.61 9.36 7.70 -12.25 -0.09 9.27 16 10 O -0.51 -9.19 16.52 5.33 0.09 -9.11 16 11 N -0.58 -8.14 2.98 -174.08 -0.52 -8.66 16 12 C 0.11 1.59 6.41 -3.93 -0.03 1.56 16 13 C -0.12 -1.97 5.23 -26.83 -0.14 -2.11 16 14 C -0.10 -1.53 2.19 -90.58 -0.20 -1.72 16 15 C 0.16 3.20 5.65 -4.04 -0.02 3.18 16 16 N -0.73 -18.55 5.32 -59.90 -0.32 -18.87 16 17 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 18 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 19 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 20 N -0.93 -28.38 13.06 55.49 0.72 -27.66 16 21 Si 0.91 22.69 29.55 -169.99 -5.02 17.67 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 C -0.12 -1.65 5.36 -26.61 -0.14 -1.79 16 26 C 0.08 1.04 6.12 -3.71 -0.02 1.01 16 27 N -0.25 -3.12 11.86 32.11 0.38 -2.74 16 28 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.09 0.08 8.14 -51.93 -0.42 -0.34 16 30 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 33 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 36 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.09 1.36 7.00 -51.93 -0.36 1.00 16 38 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.09 1.63 7.15 -51.93 -0.37 1.26 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 41 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.38 10.10 6.84 -40.82 -0.28 9.82 16 45 H 0.26 7.52 8.31 -40.82 -0.34 7.19 16 46 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 47 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 48 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 49 H 0.12 1.47 4.17 -65.89 -0.27 1.20 16 LS Contribution 393.78 15.07 5.93 5.93 Total: -1.00 -34.29 393.78 -7.07 -41.36 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -8.02 Total: 3.76 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: -1.35 Total: 2.41 kcal Atomic # 7 Polarization: -63.32 SS G_CDS: 1.30 Total: -62.02 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.09 Total: -9.11 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.29 -7.07 -41.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205345114.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.524 kcal (2) G-P(sol) polarization free energy of solvation -34.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds