Wall clock time and date at job start Tue Mar 31 2020 20:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47361 * 2 1 4 4 C 1.52996 * 109.47184 * 239.99571 * 2 1 3 5 5 N 1.46501 * 109.46806 * 120.00130 * 2 1 3 6 6 N 1.28718 * 125.32139 * 359.96718 * 5 2 1 7 7 N 1.28981 * 108.98704 * 180.02562 * 6 5 2 8 8 C 1.34184 * 107.25522 * 0.02562 * 7 6 5 9 9 C 1.48008 * 126.70099 * 180.02562 * 8 7 6 10 10 O 1.21538 * 119.99800 * 187.53801 * 9 8 7 11 11 N 1.34780 * 119.99771 * 7.53705 * 9 8 7 12 12 C 1.46923 * 120.62658 * 186.73360 * 11 9 8 13 13 C 1.52764 * 109.00409 * 233.58249 * 12 11 9 14 14 C 1.53038 * 109.38267 * 305.58614 * 13 12 11 15 15 C 1.53003 * 109.44579 * 181.25267 * 14 13 12 16 16 N 1.46501 * 109.46948 * 64.94362 * 15 14 13 17 17 C 1.36940 * 119.99635 * 179.97438 * 16 15 14 18 18 H 1.07992 * 120.00420 * 359.97438 * 17 16 15 19 19 C 1.38819 * 119.99374 * 179.97438 * 17 16 15 20 20 N 1.31613 * 120.00579 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99502 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47276 * 60.00026 * 21 19 17 23 23 H 1.48499 * 109.46909 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47053 * 299.99743 * 21 19 17 25 25 C 1.53039 * 109.53862 * 61.24537 * 14 13 12 26 26 C 1.46924 * 120.63263 * 7.00933 * 11 9 8 27 27 N 1.28877 * 125.31961 * 180.02562 * 5 2 1 28 28 H 1.08995 * 109.47231 * 300.00552 * 1 2 3 29 29 H 1.09004 * 109.46893 * 60.00125 * 1 2 3 30 30 H 1.09001 * 109.47277 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47141 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46664 * 300.00213 * 3 2 1 33 33 H 1.08998 * 109.46974 * 59.99275 * 3 2 1 34 34 H 1.09001 * 109.47502 * 300.00460 * 4 2 1 35 35 H 1.09004 * 109.46957 * 60.00343 * 4 2 1 36 36 H 1.09003 * 109.47422 * 179.97438 * 4 2 1 37 37 H 1.09001 * 109.58774 * 353.41522 * 12 11 9 38 38 H 1.09000 * 109.58776 * 113.84223 * 12 11 9 39 39 H 1.08999 * 109.56198 * 185.55431 * 13 12 11 40 40 H 1.08994 * 109.35980 * 65.50502 * 13 12 11 41 41 H 1.09001 * 109.46040 * 301.22060 * 14 13 12 42 42 H 1.09004 * 109.46534 * 184.93793 * 15 14 13 43 43 H 1.09000 * 109.47304 * 304.94117 * 15 14 13 44 44 H 0.96998 * 120.00181 * 359.97438 * 16 15 14 45 45 H 0.96996 * 120.00146 * 179.97438 * 20 19 17 46 46 H 1.08999 * 109.49823 * 178.68440 * 25 14 13 47 47 H 1.08997 * 109.52595 * 58.59761 * 25 14 13 48 48 H 1.08993 * 109.58535 * 246.15806 * 26 11 9 49 49 H 1.09007 * 109.58389 * 6.44055 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 2.0183 -0.6907 1.1962 6 7 1.2761 -1.2160 2.1072 7 7 2.0306 -1.7388 3.0133 8 6 3.3028 -1.5252 2.6438 9 6 4.5189 -1.9472 3.3744 10 8 5.6129 -1.5720 3.0010 11 7 4.4129 -2.7475 4.4536 12 6 5.5911 -3.0556 5.2755 13 6 5.7265 -4.5720 5.4023 14 6 4.4167 -5.1559 5.9368 15 6 4.5611 -6.6709 6.0939 16 7 5.5644 -6.9620 7.1209 17 6 5.8645 -8.2603 7.4365 18 1 5.3612 -9.0696 6.9286 19 6 6.8156 -8.5360 8.4093 20 7 7.4287 -7.5497 9.0286 21 14 7.2255 -10.3071 8.8393 22 1 7.7351 -11.0045 7.6314 23 1 8.2640 -10.3311 9.9005 24 1 6.0027 -10.9934 9.3283 25 6 3.2824 -4.8509 4.9557 26 6 3.1183 -3.3332 4.8271 27 7 3.2580 -0.8663 1.5013 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6767 -1.7490 -1.2492 35 1 1.6767 -0.2075 -2.1392 36 1 3.1301 -0.7209 -1.2494 37 1 6.4842 -2.6489 4.8010 38 1 5.4699 -2.6182 6.2665 39 1 6.5381 -4.8097 6.0899 40 1 5.9422 -4.9986 4.4228 41 1 4.1889 -4.7104 6.9052 42 1 3.6031 -7.0983 6.3904 43 1 4.8752 -7.1063 5.1453 44 1 6.0162 -6.2350 7.5774 45 1 8.0930 -7.7424 9.7086 46 1 2.3544 -5.2871 5.3255 47 1 3.5205 -5.2750 3.9803 48 1 2.7913 -2.9189 5.7807 49 1 2.3795 -3.1073 4.0580 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205345114.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:38 Heat of formation + Delta-G solvation = 87.503805 kcal Electronic energy + Delta-G solvation = -29373.000126 eV Core-core repulsion = 25373.040776 eV Total energy + Delta-G solvation = -3999.959350 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -45.64436 -41.35740 -39.06036 -38.62721 -36.65809 -34.84245 -34.52316 -33.68903 -32.26809 -32.01877 -28.76894 -28.53656 -28.35676 -26.62064 -25.86670 -25.26526 -24.05388 -23.33551 -21.94525 -21.68436 -20.51448 -19.22278 -18.60352 -18.52324 -17.76898 -17.45919 -16.69991 -16.44529 -15.88360 -15.54301 -15.42393 -15.31857 -15.26728 -15.18709 -15.02451 -14.56148 -14.25185 -14.02577 -13.87764 -13.56862 -13.44952 -13.37670 -13.22977 -13.07480 -12.92520 -12.84346 -12.71376 -12.64945 -12.42784 -12.19576 -12.17271 -12.12270 -12.12006 -11.87169 -11.67676 -11.65886 -11.50422 -11.40456 -11.01712 -10.88889 -9.84930 -8.96240 -7.92983 -5.20947 -0.18880 0.20320 0.62278 1.47744 1.50742 1.52663 1.56849 1.79577 2.57117 2.63033 2.88954 3.40037 3.48606 3.49125 3.62693 3.72767 3.81354 3.85941 3.92065 4.08330 4.18913 4.32419 4.34317 4.40962 4.49400 4.52738 4.58137 4.60820 4.62299 4.72798 4.73669 4.73732 4.84418 4.92323 4.97064 5.02613 5.06788 5.11231 5.11385 5.15939 5.17716 5.23533 5.26966 5.48351 5.51185 5.55685 6.05917 6.29570 6.65680 7.02896 7.36088 8.13185 8.36934 9.30180 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.031057 B = 0.002024 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.345104 B =13831.158964 C =14176.960215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.159 3.841 3 C -0.158 4.158 4 C -0.158 4.158 5 N -0.107 5.107 6 N -0.057 5.057 7 N -0.262 5.262 8 C 0.118 3.882 9 C 0.612 3.388 10 O -0.549 6.549 11 N -0.580 5.580 12 C 0.119 3.881 13 C -0.116 4.116 14 C -0.085 4.085 15 C 0.157 3.843 16 N -0.743 5.743 17 C -0.246 4.246 18 H 0.073 0.927 19 C -0.076 4.076 20 N -0.968 5.968 21 Si 0.973 3.027 22 H -0.280 1.280 23 H -0.295 1.295 24 H -0.278 1.278 25 C -0.116 4.116 26 C 0.087 3.913 27 N -0.259 5.259 28 H 0.071 0.929 29 H 0.126 0.874 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.129 0.871 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.129 0.871 36 H 0.062 0.938 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.067 0.933 40 H 0.053 0.947 41 H 0.075 0.925 42 H 0.024 0.976 43 H 0.012 0.988 44 H 0.376 0.624 45 H 0.251 0.749 46 H 0.097 0.903 47 H 0.060 0.940 48 H 0.089 0.911 49 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.326 20.696 -22.284 35.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.081 3.919 3 C -0.216 4.216 4 C -0.217 4.217 5 N -0.024 5.024 6 N -0.049 5.049 7 N -0.135 5.135 8 C -0.165 4.165 9 C 0.394 3.606 10 O -0.425 6.425 11 N -0.312 5.312 12 C -0.002 4.002 13 C -0.154 4.154 14 C -0.104 4.104 15 C 0.031 3.969 16 N -0.386 5.386 17 C -0.378 4.378 18 H 0.091 0.909 19 C -0.268 4.268 20 N -0.618 5.618 21 Si 0.802 3.198 22 H -0.206 1.206 23 H -0.221 1.221 24 H -0.204 1.204 25 C -0.154 4.154 26 C -0.035 4.035 27 N -0.112 5.112 28 H 0.090 0.910 29 H 0.145 0.855 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.147 0.853 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.147 0.853 36 H 0.081 0.919 37 H 0.105 0.895 38 H 0.109 0.891 39 H 0.086 0.914 40 H 0.072 0.928 41 H 0.094 0.906 42 H 0.042 0.958 43 H 0.030 0.970 44 H 0.208 0.792 45 H 0.060 0.940 46 H 0.115 0.885 47 H 0.079 0.921 48 H 0.108 0.892 49 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -18.393 20.799 -22.638 35.824 hybrid contribution 1.423 -1.042 0.943 2.000 sum -16.970 19.757 -21.695 33.897 Atomic orbital electron populations 1.22183 0.87790 1.04853 1.05947 1.22229 0.98145 0.93336 0.78189 1.22310 1.02485 0.91069 1.05726 1.22314 1.02483 1.01201 0.95655 1.51302 0.99962 1.32790 1.18333 1.78832 1.21750 1.08491 0.95777 1.75924 0.99714 1.17996 1.19911 1.25047 0.94366 1.03122 0.93941 1.16370 0.84618 0.79485 0.80084 1.90809 1.26989 1.57697 1.66961 1.47961 1.12127 1.45428 1.25658 1.21676 0.87604 0.95771 0.95166 1.21712 0.98408 0.94146 1.01151 1.21229 0.95080 0.94642 0.99403 1.20822 0.91354 0.94103 0.90636 1.42566 1.46825 1.04447 1.44766 1.19591 1.16741 0.85844 1.15626 0.90928 1.25551 1.00043 1.01275 0.99953 1.69795 1.30716 1.31731 1.29583 0.85225 0.77370 0.79981 0.77259 1.20622 1.22110 1.20365 1.21851 0.99143 0.95268 0.99183 1.22654 0.83662 0.92828 1.04314 1.74965 1.04164 1.17164 1.14954 0.91036 0.85523 0.91071 0.91902 0.85287 0.91867 0.91914 0.85282 0.91914 0.89547 0.89075 0.91402 0.92781 0.90645 0.95837 0.96973 0.79171 0.94020 0.88453 0.92136 0.89245 0.85590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 7.90 71.98 0.57 -0.09 16 2 C 0.16 1.46 1.30 3.60 0.00 1.46 16 3 C -0.16 -1.03 8.66 71.98 0.62 -0.41 16 4 C -0.16 -1.08 8.66 71.98 0.62 -0.45 16 5 N -0.11 -2.02 3.72 -152.25 -0.57 -2.58 16 6 N -0.06 -1.21 12.21 37.02 0.45 -0.76 16 7 N -0.26 -6.42 9.07 -52.37 -0.47 -6.90 16 8 C 0.12 3.26 7.80 137.15 1.07 4.33 16 9 C 0.61 18.81 7.70 86.83 0.67 19.48 16 10 O -0.55 -20.11 16.52 -3.83 -0.06 -20.17 16 11 N -0.58 -15.92 2.98 -822.95 -2.45 -18.37 16 12 C 0.12 3.37 6.41 86.22 0.55 3.92 16 13 C -0.12 -3.73 5.23 30.53 0.16 -3.58 16 14 C -0.08 -2.65 2.19 -10.77 -0.02 -2.68 16 15 C 0.16 6.31 5.65 86.38 0.49 6.79 16 16 N -0.74 -38.03 5.32 -343.44 -1.83 -39.85 16 17 C -0.25 -13.97 9.99 84.03 0.84 -13.13 16 18 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16 19 C -0.08 -4.42 5.50 84.86 0.47 -3.95 16 20 N -0.97 -59.66 13.06 21.65 0.28 -59.38 16 21 Si 0.97 46.80 29.55 68.60 2.03 48.82 16 22 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 23 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 24 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 25 C -0.12 -2.88 5.36 30.67 0.16 -2.71 16 26 C 0.09 2.03 6.12 86.36 0.53 2.56 16 27 N -0.26 -6.52 11.86 -52.32 -0.62 -7.14 16 28 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.13 -0.31 8.14 -2.38 -0.02 -0.33 16 30 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.13 -0.10 8.14 -2.39 -0.02 -0.12 16 33 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.13 -0.07 8.14 -2.38 -0.02 -0.09 16 36 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.09 2.59 7.00 -2.39 -0.02 2.58 16 38 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.07 2.52 7.15 -2.39 -0.02 2.50 16 40 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 42 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 44 H 0.38 20.20 6.84 -92.71 -0.63 19.57 16 45 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 46 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 47 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 48 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 49 H 0.13 2.90 4.17 -20.44 -0.09 2.82 16 Total: -1.00 -74.95 393.78 3.74 -71.22 By element: Atomic # 1 Polarization: 23.33 SS G_CDS: 0.24 Total: 23.58 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: 6.74 Total: 11.54 kcal Atomic # 7 Polarization: -129.78 SS G_CDS: -5.20 Total: -134.99 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: -0.06 Total: -20.17 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 2.03 Total: 48.82 kcal Total: -74.95 3.74 -71.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205345114.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.720 kcal (2) G-P(sol) polarization free energy of solvation -74.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds