Wall clock time and date at job start Tue Mar 31 2020 19:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47017 * 2 1 4 4 C 1.50698 * 109.47011 * 239.99940 * 2 1 3 5 5 N 1.31081 * 126.66012 * 59.68986 * 4 2 1 6 6 N 1.28836 * 107.98929 * 179.89513 * 5 4 2 7 7 N 1.28734 * 109.39914 * 0.37286 * 6 5 4 8 8 N 1.29019 * 108.80840 * 359.76626 * 7 6 5 9 9 C 1.46504 * 126.43441 * 180.02562 * 8 7 6 10 10 C 1.50697 * 109.47060 * 269.97768 * 9 8 7 11 11 O 1.21286 * 120.00507 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00257 * 180.02562 * 10 9 8 13 13 C 1.46497 * 120.00346 * 180.02562 * 12 10 9 14 14 C 1.53008 * 109.47200 * 180.02562 * 13 12 10 15 15 C 1.53041 * 109.45729 * 295.02803 * 14 13 12 16 16 C 1.53193 * 109.31260 * 178.60268 * 15 14 13 17 17 N 1.46921 * 108.76477 * 54.65305 * 16 15 14 18 18 C 1.36935 * 120.63235 * 126.40560 * 17 16 15 19 19 H 1.08001 * 120.00181 * 332.60927 * 18 17 16 20 20 C 1.38817 * 120.00261 * 152.60320 * 18 17 16 21 21 N 1.31615 * 119.99904 * 159.34300 * 20 18 17 22 22 Si 1.86804 * 119.99876 * 339.35337 * 20 18 17 23 23 H 1.48496 * 109.47125 * 92.93831 * 22 20 18 24 24 H 1.48501 * 109.46681 * 212.94052 * 22 20 18 25 25 H 1.48505 * 109.46835 * 332.93672 * 22 20 18 26 26 C 1.46936 * 118.73889 * 306.38535 * 17 16 15 27 27 C 1.53035 * 109.45995 * 174.97444 * 14 13 12 28 28 H 1.08998 * 109.47524 * 60.00057 * 1 2 3 29 29 H 1.08996 * 109.47230 * 299.99326 * 1 2 3 30 30 H 1.09007 * 109.46840 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47029 * 120.00078 * 2 1 3 32 32 H 1.09006 * 109.46682 * 60.00288 * 3 2 1 33 33 H 1.09000 * 109.47020 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.47285 * 299.99921 * 3 2 1 35 35 H 1.08995 * 109.47275 * 29.97633 * 9 8 7 36 36 H 1.08999 * 109.46673 * 149.97959 * 9 8 7 37 37 H 0.97008 * 119.99459 * 0.02562 * 12 10 9 38 38 H 1.09002 * 109.47152 * 300.00006 * 13 12 10 39 39 H 1.08999 * 109.47258 * 60.00231 * 13 12 10 40 40 H 1.09002 * 109.45969 * 54.99814 * 14 13 12 41 41 H 1.09009 * 109.49617 * 298.56391 * 15 14 13 42 42 H 1.09002 * 109.49956 * 58.66064 * 15 14 13 43 43 H 1.08996 * 109.59445 * 294.86304 * 16 15 14 44 44 H 1.08999 * 109.70279 * 174.50002 * 16 15 14 45 45 H 0.97003 * 119.99987 * 180.02562 * 21 20 18 46 46 H 1.08998 * 109.58104 * 293.82271 * 26 17 16 47 47 H 1.09000 * 109.70245 * 173.46921 * 26 17 16 48 48 H 1.09005 * 109.49728 * 301.33218 * 27 14 13 49 49 H 1.09000 * 109.50385 * 61.39775 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 7 1.7928 -0.3816 -2.4766 6 7 2.3977 -1.2294 -3.2350 7 7 3.0104 -2.0950 -2.5052 8 7 2.8092 -1.8090 -1.2633 9 6 3.3291 -2.5420 -0.1063 10 6 2.3475 -3.6138 0.2918 11 8 1.3153 -3.7522 -0.3299 12 7 2.6164 -4.4187 1.3389 13 6 1.6623 -5.4610 1.7256 14 6 2.2047 -6.2257 2.9348 15 6 3.4804 -6.9712 2.5363 16 6 4.0397 -7.7072 3.7578 17 7 2.9869 -8.5679 4.3140 18 6 3.2125 -9.9031 4.5180 19 1 3.9332 -10.4283 3.9088 20 6 2.5150 -10.5816 5.5081 21 7 2.4076 -11.8923 5.4568 22 14 1.7286 -9.6341 6.9129 23 1 0.3186 -9.3193 6.5694 24 1 1.7652 -10.4585 8.1475 25 1 2.4770 -8.3714 7.1384 26 6 1.6874 -7.9688 4.6475 27 6 1.1547 -7.2296 3.4160 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 0.8899 32 1 1.6766 1.9563 0.8901 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 4.2830 -3.0013 -0.3658 36 1 3.4721 -1.8529 0.7260 37 1 3.4417 -4.3078 1.8364 38 1 0.7081 -5.0022 1.9845 39 1 1.5201 -6.1503 0.8933 40 1 2.4302 -5.5233 3.7373 41 1 3.2506 -7.6915 1.7510 42 1 4.2197 -6.2581 2.1714 43 1 4.3541 -6.9826 4.5089 44 1 4.8919 -8.3183 3.4603 45 1 1.9199 -12.3664 6.1485 46 1 1.8100 -7.2655 5.4712 47 1 0.9853 -8.7510 4.9363 48 1 0.2383 -6.7004 3.6776 49 1 0.9465 -7.9471 2.6223 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224787254.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:09 Heat of formation + Delta-G solvation = 66.013014 kcal Electronic energy + Delta-G solvation = -29319.154705 eV Core-core repulsion = 25318.263445 eV Total energy + Delta-G solvation = -4000.891260 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -45.29792 -41.08955 -39.59362 -37.20048 -36.71066 -36.31675 -34.61499 -33.02138 -32.51841 -31.86486 -30.46962 -28.27331 -28.11272 -25.68366 -25.48531 -24.60344 -24.05711 -22.82168 -22.05671 -21.50984 -20.84346 -19.14685 -18.83808 -18.67426 -17.44771 -17.24256 -17.03199 -16.64795 -16.35087 -15.92759 -15.64682 -15.37469 -15.17604 -15.14717 -14.84344 -14.45315 -14.43258 -14.19624 -13.97628 -13.86057 -13.59328 -13.40054 -13.20564 -13.09801 -12.92848 -12.69025 -12.52938 -12.50200 -12.30064 -12.27959 -12.23709 -12.10912 -11.89504 -11.73886 -11.57471 -11.36643 -11.19699 -11.18361 -10.96656 -10.65860 -10.22967 -8.90270 -8.15709 -5.46866 0.09174 0.84742 1.13231 1.31132 1.31527 1.42010 1.51553 2.00142 2.42899 2.88073 3.07163 3.15624 3.38852 3.43827 3.61936 3.78279 3.87819 3.91930 3.96779 4.01751 4.05721 4.19607 4.37614 4.40072 4.44558 4.56103 4.63366 4.65323 4.71532 4.77531 4.78166 4.83612 4.90469 4.91055 4.95162 5.03519 5.08808 5.14925 5.18716 5.23491 5.27203 5.28835 5.31035 5.36596 5.61964 5.88717 6.13802 6.34556 6.95332 7.02273 7.48381 7.66054 8.04816 9.04450 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.025434 B = 0.002132 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.632987 B =13131.475742 C =13615.837803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.010 4.010 3 C -0.140 4.140 4 C 0.209 3.791 5 N -0.331 5.331 6 N -0.109 5.109 7 N -0.105 5.105 8 N -0.292 5.292 9 C 0.086 3.914 10 C 0.499 3.501 11 O -0.578 6.578 12 N -0.696 5.696 13 C 0.136 3.864 14 C -0.078 4.078 15 C -0.120 4.120 16 C 0.140 3.860 17 N -0.623 5.623 18 C -0.247 4.247 19 H 0.047 0.953 20 C -0.043 4.043 21 N -0.962 5.962 22 Si 0.952 3.048 23 H -0.276 1.276 24 H -0.316 1.316 25 H -0.253 1.253 26 C 0.119 3.881 27 C -0.123 4.123 28 H 0.054 0.946 29 H 0.101 0.899 30 H 0.038 0.962 31 H 0.125 0.875 32 H 0.099 0.901 33 H 0.066 0.934 34 H 0.053 0.947 35 H 0.175 0.825 36 H 0.196 0.804 37 H 0.425 0.575 38 H 0.071 0.929 39 H 0.048 0.952 40 H 0.101 0.899 41 H 0.040 0.960 42 H 0.098 0.902 43 H 0.046 0.954 44 H 0.048 0.952 45 H 0.260 0.740 46 H 0.041 0.959 47 H 0.042 0.958 48 H 0.082 0.918 49 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.546 30.126 -4.042 30.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.032 4.032 3 C -0.198 4.198 4 C -0.069 4.069 5 N -0.180 5.180 6 N -0.103 5.103 7 N -0.091 5.091 8 N -0.093 5.093 9 C -0.038 4.038 10 C 0.284 3.716 11 O -0.458 6.458 12 N -0.349 5.349 13 C 0.012 3.988 14 C -0.096 4.096 15 C -0.159 4.159 16 C 0.016 3.984 17 N -0.348 5.348 18 C -0.377 4.377 19 H 0.064 0.936 20 C -0.237 4.237 21 N -0.608 5.608 22 Si 0.781 3.219 23 H -0.203 1.203 24 H -0.245 1.245 25 H -0.177 1.177 26 C -0.006 4.006 27 C -0.162 4.162 28 H 0.074 0.926 29 H 0.120 0.880 30 H 0.058 0.942 31 H 0.143 0.857 32 H 0.118 0.882 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.192 0.808 36 H 0.213 0.787 37 H 0.264 0.736 38 H 0.089 0.911 39 H 0.066 0.934 40 H 0.119 0.881 41 H 0.059 0.941 42 H 0.116 0.884 43 H 0.064 0.936 44 H 0.067 0.933 45 H 0.069 0.931 46 H 0.059 0.941 47 H 0.060 0.940 48 H 0.101 0.899 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.923 29.715 -5.852 30.347 hybrid contribution -0.244 -1.110 1.426 1.824 sum 1.679 28.605 -4.426 28.994 Atomic orbital electron populations 1.21826 0.92333 1.01868 1.04086 1.20126 0.97279 0.96994 0.88775 1.21856 1.01717 0.92142 1.04109 1.26818 0.93305 0.88559 0.98267 1.74860 1.20586 1.22609 0.99924 1.78570 1.08094 0.99905 1.23720 1.78787 1.20765 1.20802 0.88738 1.48134 1.34359 1.19976 1.06788 1.22570 0.98712 0.95878 0.86639 1.20789 0.87077 0.83175 0.80566 1.90842 1.28806 1.71876 1.54241 1.45681 1.24685 1.33185 1.31364 1.21297 0.92289 0.88783 0.96448 1.21187 0.95174 0.96408 0.96879 1.21991 0.97319 0.99066 0.97525 1.21159 0.90181 0.92771 0.94298 1.44518 1.09868 1.05200 1.75212 1.18860 1.22080 0.84648 1.12126 0.93563 1.25995 1.00932 0.95892 1.00879 1.69991 1.46130 1.08851 1.35840 0.85829 0.78569 0.78606 0.78903 1.20293 1.24487 1.17662 1.21396 0.86959 0.95809 0.96393 1.21894 0.98586 0.97884 0.97849 0.92646 0.88022 0.94233 0.85671 0.88196 0.91517 0.92786 0.80758 0.78724 0.73628 0.91098 0.93355 0.88118 0.94111 0.88388 0.93606 0.93302 0.93113 0.94080 0.93961 0.89913 0.93532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.18 71.98 0.66 -0.95 16 2 C -0.01 -0.09 3.26 -11.54 -0.04 -0.13 16 3 C -0.14 -0.79 9.18 71.98 0.66 -0.13 16 4 C 0.21 3.77 6.64 138.13 0.92 4.69 16 5 N -0.33 -8.64 12.36 -50.45 -0.62 -9.26 16 6 N -0.11 -3.26 13.43 37.01 0.50 -2.77 16 7 N -0.10 -2.72 13.29 37.02 0.49 -2.22 16 8 N -0.29 -5.10 2.83 -341.98 -0.97 -6.07 16 9 C 0.09 0.53 6.57 85.63 0.56 1.09 16 10 C 0.50 7.11 7.90 87.66 0.69 7.80 16 11 O -0.58 -15.53 16.43 -3.05 -0.05 -15.58 16 12 N -0.70 -7.11 5.27 -463.05 -2.44 -9.55 16 13 C 0.14 2.37 5.06 86.38 0.44 2.81 16 14 C -0.08 -1.53 2.19 -10.77 -0.02 -1.56 16 15 C -0.12 -2.73 5.25 30.67 0.16 -2.57 16 16 C 0.14 4.48 6.52 86.36 0.56 5.05 16 17 N -0.62 -26.89 2.77 -699.09 -1.94 -28.82 16 18 C -0.25 -13.62 10.03 84.04 0.84 -12.78 16 19 H 0.05 2.83 8.06 -2.91 -0.02 2.80 16 20 C -0.04 -2.46 5.23 84.86 0.44 -2.01 16 21 N -0.96 -60.22 13.97 21.65 0.30 -59.92 16 22 Si 0.95 44.96 24.35 68.60 1.67 46.63 16 23 H -0.28 -12.33 6.62 99.48 0.66 -11.67 16 24 H -0.32 -15.39 7.11 99.48 0.71 -14.69 16 25 H -0.25 -10.99 6.64 99.48 0.66 -10.33 16 26 C 0.12 4.51 4.20 86.36 0.36 4.87 16 27 C -0.12 -3.46 5.36 30.67 0.16 -3.29 16 28 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.04 0.63 8.14 -2.38 -0.02 0.61 16 31 H 0.13 0.22 6.85 -2.39 -0.02 0.20 16 32 H 0.10 0.10 8.14 -2.38 -0.02 0.08 16 33 H 0.07 0.29 8.14 -2.39 -0.02 0.27 16 34 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.18 0.10 8.14 -2.39 -0.02 0.08 16 36 H 0.20 -1.01 7.13 -2.39 -0.02 -1.03 16 37 H 0.42 1.00 7.65 -92.70 -0.71 0.29 16 38 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.04 1.15 8.14 -2.38 -0.02 1.13 16 42 H 0.10 1.35 7.15 -2.39 -0.02 1.33 16 43 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.05 1.68 7.93 -2.39 -0.02 1.66 16 45 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 46 H 0.04 1.43 7.07 -2.39 -0.02 1.42 16 47 H 0.04 1.86 4.50 -2.39 -0.01 1.85 16 48 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 49 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -89.07 390.26 3.50 -85.57 By element: Atomic # 1 Polarization: -1.05 SS G_CDS: 0.15 Total: -0.90 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: 6.41 Total: 2.89 kcal Atomic # 7 Polarization: -113.94 SS G_CDS: -4.68 Total: -118.61 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: -0.05 Total: -15.58 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.67 Total: 46.63 kcal Total: -89.07 3.50 -85.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224787254.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.580 kcal (2) G-P(sol) polarization free energy of solvation -89.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds