Wall clock time and date at job start Tue Mar 31 2020 19:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46507 * 119.99857 * 2 1 4 4 C 1.53003 * 109.47273 * 264.87926 * 3 2 1 5 5 H 1.08997 * 112.73951 * 315.99002 * 4 3 2 6 6 C 1.53491 * 113.46401 * 86.73172 * 4 3 2 7 7 C 1.53608 * 83.30615 * 140.82850 * 6 4 3 8 8 N 1.47061 * 113.46528 * 185.24152 * 4 3 2 9 9 C 1.36931 * 136.06019 * 38.06747 * 8 4 3 10 10 H 1.08007 * 120.00239 * 4.84743 * 9 8 4 11 11 C 1.38815 * 120.00363 * 184.85302 * 9 8 4 12 12 N 1.31624 * 119.99643 * 5.26618 * 11 9 8 13 13 Si 1.86801 * 120.00203 * 185.27395 * 11 9 8 14 14 H 1.48500 * 109.47446 * 64.99388 * 13 11 9 15 15 H 1.48501 * 109.46902 * 184.99670 * 13 11 9 16 16 H 1.48496 * 109.47029 * 304.99331 * 13 11 9 17 17 C 1.34771 * 120.00209 * 180.02562 * 2 1 3 18 18 O 1.21284 * 120.00040 * 184.91464 * 17 2 1 19 19 C 1.50697 * 120.00340 * 4.91290 * 17 2 1 20 20 C 1.50703 * 109.47719 * 185.20666 * 19 17 2 21 21 N 1.33318 * 126.54650 * 85.03882 * 20 19 17 22 22 N 1.28996 * 107.35113 * 180.02562 * 21 20 19 23 23 N 1.28779 * 108.72708 * 0.02562 * 22 21 20 24 24 C 1.46499 * 125.45095 * 179.97438 * 23 22 21 25 25 C 1.52997 * 109.47067 * 5.05358 * 24 23 22 26 26 C 1.53004 * 109.47205 * 125.05007 * 24 23 22 27 27 C 1.53001 * 109.47473 * 245.04892 * 24 23 22 28 28 N 1.28881 * 109.10474 * 0.02562 * 23 22 21 29 29 H 1.08996 * 109.47256 * 269.99597 * 1 2 3 30 30 H 1.08998 * 109.47241 * 30.00522 * 1 2 3 31 31 H 1.09001 * 109.46561 * 149.99863 * 1 2 3 32 32 H 1.08997 * 109.46766 * 24.88026 * 3 2 1 33 33 H 1.08994 * 109.46796 * 144.87737 * 3 2 1 34 34 H 1.09002 * 114.20802 * 254.43406 * 6 4 3 35 35 H 1.09002 * 114.20918 * 27.25816 * 6 4 3 36 36 H 1.09002 * 113.50998 * 219.18075 * 7 6 4 37 37 H 1.08998 * 113.46493 * 88.76552 * 7 6 4 38 38 H 0.96999 * 119.99560 * 180.02562 * 12 11 9 39 39 H 1.08999 * 109.47492 * 65.20343 * 19 17 2 40 40 H 1.09008 * 109.46917 * 305.20576 * 19 17 2 41 41 H 1.08998 * 109.47497 * 59.99356 * 25 24 23 42 42 H 1.09001 * 109.47573 * 180.02562 * 25 24 23 43 43 H 1.09003 * 109.47268 * 299.99651 * 25 24 23 44 44 H 1.08998 * 109.46904 * 60.00234 * 26 24 23 45 45 H 1.08992 * 109.47474 * 180.02562 * 26 24 23 46 46 H 1.09007 * 109.46923 * 300.00137 * 26 24 23 47 47 H 1.09003 * 109.46518 * 64.81562 * 27 24 23 48 48 H 1.09004 * 109.47097 * 184.80804 * 27 24 23 49 49 H 1.08993 * 109.47458 * 304.81000 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.5640 1.6462 -1.4368 5 1 2.9452 0.8012 -2.0101 6 6 1.4621 2.4302 -2.1628 7 6 2.6494 3.2217 -2.7315 8 7 3.4092 2.8460 -1.5296 9 6 4.4465 3.3793 -0.8123 10 1 4.8679 2.8307 0.0172 11 6 4.9566 4.6251 -1.1510 12 7 4.3779 5.3391 -2.0933 13 14 6.4642 5.2883 -0.2697 14 1 7.6358 4.4295 -0.5783 15 1 6.7337 6.6757 -0.7255 16 1 6.2217 5.2869 1.1953 17 6 2.1389 -1.1671 -0.0005 18 8 3.3484 -1.1691 0.0895 19 6 1.3897 -2.4698 -0.1129 20 6 2.3535 -3.6184 0.0384 21 7 2.7684 -4.1610 1.1833 22 7 3.5847 -5.1140 0.8838 23 7 3.6901 -5.1805 -0.3980 24 6 4.5243 -6.1340 -1.1336 25 6 5.1559 -7.1227 -0.1515 26 6 3.6606 -6.8966 -2.1403 27 6 5.6276 -5.3787 -1.8773 28 7 2.9452 -4.2733 -0.9301 29 1 -0.3633 -0.0001 1.0276 30 1 -0.3633 0.8899 -0.5139 31 1 -0.3632 -0.8900 -0.5139 32 1 1.5717 2.0495 0.4324 33 1 3.1070 1.1632 0.5912 34 1 0.9150 1.8489 -2.9051 35 1 0.8152 3.0077 -1.5023 36 1 2.4610 4.2925 -2.8089 37 1 3.0534 2.7975 -3.6506 38 1 4.7346 6.2094 -2.3303 39 1 0.9056 -2.5277 -1.0878 40 1 0.6345 -2.5235 0.6715 41 1 4.3699 -7.6607 0.3784 42 1 5.7769 -7.8319 -0.6986 43 1 5.7712 -6.5794 0.5658 44 1 3.2107 -6.1923 -2.8399 45 1 4.2811 -7.6063 -2.6873 46 1 2.8746 -7.4348 -1.6104 47 1 6.2936 -4.9052 -1.1558 48 1 6.1955 -6.0773 -2.4919 49 1 5.1800 -4.6156 -2.5139 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234498923.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:19 Heat of formation + Delta-G solvation = 155.103426 kcal Electronic energy + Delta-G solvation = -29623.668764 eV Core-core repulsion = 25626.640754 eV Total energy + Delta-G solvation = -3997.028010 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -44.36638 -39.80238 -38.05589 -37.78268 -35.18809 -33.61803 -33.24652 -32.13168 -30.12435 -28.24703 -27.97255 -27.87297 -27.74261 -26.08871 -24.65578 -23.41218 -23.03342 -21.78888 -20.78216 -19.29966 -18.94858 -17.49680 -17.25603 -16.82009 -16.53257 -16.05196 -15.67065 -14.77082 -14.69181 -14.58668 -14.41390 -13.99082 -13.85924 -13.66747 -13.34924 -13.22165 -13.04696 -12.89924 -12.79968 -12.58372 -12.45839 -12.29646 -12.26925 -11.95138 -11.89871 -11.79307 -11.50992 -11.46261 -11.01541 -10.91377 -10.85419 -10.79211 -10.71344 -10.40794 -10.27919 -9.81657 -9.75086 -9.65736 -9.37724 -8.74580 -8.25086 -6.80599 -5.69736 -3.03212 1.24381 1.74515 2.12298 2.78064 3.19094 3.45105 3.48891 3.50910 3.70036 3.97117 4.10441 4.20945 4.45380 4.51781 4.61208 4.93587 4.98439 5.04836 5.06290 5.11134 5.13197 5.20676 5.22424 5.26123 5.33590 5.40703 5.49599 5.53428 5.56715 5.58105 5.66136 5.72470 5.73548 5.83940 5.88750 6.03234 6.19311 6.22260 6.35290 6.49788 6.57486 6.73555 6.90257 7.28874 7.48361 7.57003 7.64823 8.06549 8.35324 8.38932 9.10747 9.77326 10.71012 11.46293 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.013352 B = 0.002707 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.628112 B =10342.681054 C =11326.736362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.609 5.609 3 C 0.117 3.883 4 C 0.135 3.865 5 H 0.043 0.957 6 C -0.166 4.166 7 C 0.145 3.855 8 N -0.600 5.600 9 C -0.214 4.214 10 H 0.079 0.921 11 C -0.008 4.008 12 N -0.920 5.920 13 Si 0.911 3.089 14 H -0.286 1.286 15 H -0.290 1.290 16 H -0.283 1.283 17 C 0.516 3.484 18 O -0.525 6.525 19 C -0.042 4.042 20 C 0.187 3.813 21 N -0.277 5.277 22 N -0.064 5.064 23 N -0.130 5.130 24 C 0.179 3.821 25 C -0.152 4.152 26 C -0.156 4.156 27 C -0.161 4.161 28 N -0.294 5.294 29 H 0.056 0.944 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.052 0.948 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.019 0.981 38 H 0.253 0.747 39 H 0.122 0.878 40 H 0.121 0.879 41 H 0.073 0.927 42 H 0.088 0.912 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.088 0.912 46 H 0.066 0.934 47 H 0.069 0.931 48 H 0.089 0.911 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.787 -24.866 -0.151 26.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.343 5.343 3 C -0.005 4.005 4 C 0.027 3.973 5 H 0.060 0.940 6 C -0.204 4.204 7 C 0.020 3.980 8 N -0.325 5.325 9 C -0.341 4.341 10 H 0.097 0.903 11 C -0.204 4.204 12 N -0.567 5.567 13 Si 0.741 3.259 14 H -0.213 1.213 15 H -0.216 1.216 16 H -0.209 1.209 17 C 0.301 3.699 18 O -0.400 6.400 19 C -0.085 4.085 20 C -0.096 4.096 21 N -0.148 5.148 22 N -0.056 5.056 23 N -0.044 5.044 24 C 0.098 3.902 25 C -0.210 4.210 26 C -0.215 4.215 27 C -0.220 4.220 28 N -0.144 5.144 29 H 0.075 0.925 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.071 0.929 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.037 0.963 38 H 0.063 0.937 39 H 0.140 0.860 40 H 0.139 0.861 41 H 0.092 0.908 42 H 0.107 0.893 43 H 0.096 0.904 44 H 0.097 0.903 45 H 0.107 0.893 46 H 0.085 0.915 47 H 0.088 0.912 48 H 0.108 0.892 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.474 -25.060 0.289 26.152 hybrid contribution 0.608 0.786 0.057 0.996 sum -6.866 -24.274 0.346 25.228 Atomic orbital electron populations 1.21864 0.79721 1.03463 1.01777 1.47823 1.06877 1.06258 1.73357 1.21898 0.96948 0.82293 0.99403 1.22416 0.90344 0.91484 0.93096 0.94015 1.23743 0.96830 0.99787 1.00035 1.22129 0.86808 0.99974 0.89104 1.45583 1.38353 1.20880 1.27732 1.18883 1.07025 0.98903 1.09323 0.90340 1.24759 0.99785 0.96633 0.99247 1.69826 1.41163 1.12439 1.33257 0.86214 0.82891 0.77819 0.79002 1.21337 1.21590 1.20910 1.20066 0.87931 0.84648 0.77212 1.90771 1.14030 1.86937 1.48301 1.19922 0.95267 0.87012 1.06342 1.24633 1.00457 0.99424 0.85134 1.75784 1.09188 1.05008 1.24802 1.78868 1.14425 1.15222 0.97125 1.50394 1.28286 1.21840 1.03899 1.21366 0.89757 0.86742 0.92326 1.22086 1.01891 0.98172 0.98884 1.22206 1.00084 1.00700 0.98491 1.22265 0.97089 1.01489 1.01138 1.74537 1.08650 1.03627 1.27634 0.92500 0.90334 0.91302 0.90103 0.90191 0.92893 0.90497 0.90316 0.96292 0.93725 0.85988 0.86056 0.90810 0.89325 0.90443 0.90276 0.89285 0.91535 0.91154 0.89236 0.90339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.70 10.14 59.85 0.61 1.30 16 2 N -0.61 -8.94 2.88 -181.58 -0.52 -9.46 16 3 C 0.12 2.20 5.34 -4.04 -0.02 2.18 16 4 C 0.13 2.87 4.28 -72.41 -0.31 2.56 16 5 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 6 C -0.17 -3.11 8.02 -26.16 -0.21 -3.32 16 7 C 0.15 3.51 7.59 -8.46 -0.06 3.45 16 8 N -0.60 -15.90 3.64 -176.83 -0.64 -16.55 16 9 C -0.21 -6.23 10.54 -15.06 -0.16 -6.39 16 10 H 0.08 2.26 7.83 -52.48 -0.41 1.85 16 11 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 12 N -0.92 -27.88 11.42 55.49 0.63 -27.25 16 13 Si 0.91 23.01 29.56 -169.99 -5.02 17.99 16 14 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 15 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 16 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 17 C 0.52 8.34 7.62 -10.99 -0.08 8.26 16 18 O -0.53 -11.32 15.68 5.55 0.09 -11.24 16 19 C -0.04 -0.50 4.76 -29.04 -0.14 -0.63 16 20 C 0.19 2.75 6.87 -156.62 -1.08 1.68 16 21 N -0.28 -4.45 12.50 32.45 0.41 -4.05 16 22 N -0.06 -0.94 12.23 60.35 0.74 -0.20 16 23 N -0.13 -1.67 3.73 0.48 0.00 -1.67 16 24 C 0.18 1.51 1.30 -131.82 -0.17 1.34 16 25 C -0.15 -0.97 7.93 37.16 0.29 -0.68 16 26 C -0.16 -0.96 8.59 37.16 0.32 -0.64 16 27 C -0.16 -1.32 8.73 37.16 0.32 -1.00 16 28 N -0.29 -4.20 11.78 32.47 0.38 -3.82 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.71 8.07 -51.93 -0.42 0.29 16 31 H 0.07 0.44 6.55 -51.93 -0.34 0.10 16 32 H 0.08 1.42 7.76 -51.93 -0.40 1.02 16 33 H 0.08 1.77 7.52 -51.93 -0.39 1.37 16 34 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.08 1.37 7.94 -51.93 -0.41 0.96 16 36 H 0.08 2.09 6.85 -51.93 -0.36 1.73 16 37 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 39 H 0.12 1.08 7.82 -51.93 -0.41 0.67 16 40 H 0.12 1.04 7.83 -51.92 -0.41 0.63 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.08 0.59 8.10 -51.93 -0.42 0.17 16 44 H 0.08 0.56 8.10 -51.93 -0.42 0.14 16 45 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 404.21 15.07 6.09 6.09 Total: -1.00 -38.39 404.21 -6.81 -45.20 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -8.17 Total: -2.82 kcal Atomic # 6 Polarization: 8.56 SS G_CDS: -0.78 Total: 7.78 kcal Atomic # 7 Polarization: -63.99 SS G_CDS: 0.99 Total: -63.00 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.09 Total: -11.24 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -5.02 Total: 17.99 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -38.39 -6.81 -45.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234498923.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.301 kcal (2) G-P(sol) polarization free energy of solvation -38.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 161.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 155.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds