Wall clock time and date at job start Tue Mar 31 2020 19:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46507 * 119.99857 * 2 1 4 4 C 1.53003 * 109.47273 * 264.87926 * 3 2 1 5 5 H 1.08997 * 112.73951 * 315.99002 * 4 3 2 6 6 C 1.53491 * 113.46401 * 86.73172 * 4 3 2 7 7 C 1.53608 * 83.30615 * 140.82850 * 6 4 3 8 8 N 1.47061 * 113.46528 * 185.24152 * 4 3 2 9 9 C 1.36931 * 136.06019 * 38.06747 * 8 4 3 10 10 H 1.08007 * 120.00239 * 4.84743 * 9 8 4 11 11 C 1.38815 * 120.00363 * 184.85302 * 9 8 4 12 12 N 1.31624 * 119.99643 * 5.26618 * 11 9 8 13 13 Si 1.86801 * 120.00203 * 185.27395 * 11 9 8 14 14 H 1.48500 * 109.47446 * 64.99388 * 13 11 9 15 15 H 1.48501 * 109.46902 * 184.99670 * 13 11 9 16 16 H 1.48496 * 109.47029 * 304.99331 * 13 11 9 17 17 C 1.34771 * 120.00209 * 180.02562 * 2 1 3 18 18 O 1.21284 * 120.00040 * 184.91464 * 17 2 1 19 19 C 1.50697 * 120.00340 * 4.91290 * 17 2 1 20 20 C 1.50703 * 109.47719 * 185.20666 * 19 17 2 21 21 N 1.33318 * 126.54650 * 85.03882 * 20 19 17 22 22 N 1.28996 * 107.35113 * 180.02562 * 21 20 19 23 23 N 1.28779 * 108.72708 * 0.02562 * 22 21 20 24 24 C 1.46499 * 125.45095 * 179.97438 * 23 22 21 25 25 C 1.52997 * 109.47067 * 5.05358 * 24 23 22 26 26 C 1.53004 * 109.47205 * 125.05007 * 24 23 22 27 27 C 1.53001 * 109.47473 * 245.04892 * 24 23 22 28 28 N 1.28881 * 109.10474 * 0.02562 * 23 22 21 29 29 H 1.08996 * 109.47256 * 269.99597 * 1 2 3 30 30 H 1.08998 * 109.47241 * 30.00522 * 1 2 3 31 31 H 1.09001 * 109.46561 * 149.99863 * 1 2 3 32 32 H 1.08997 * 109.46766 * 24.88026 * 3 2 1 33 33 H 1.08994 * 109.46796 * 144.87737 * 3 2 1 34 34 H 1.09002 * 114.20802 * 254.43406 * 6 4 3 35 35 H 1.09002 * 114.20918 * 27.25816 * 6 4 3 36 36 H 1.09002 * 113.50998 * 219.18075 * 7 6 4 37 37 H 1.08998 * 113.46493 * 88.76552 * 7 6 4 38 38 H 0.96999 * 119.99560 * 180.02562 * 12 11 9 39 39 H 1.08999 * 109.47492 * 65.20343 * 19 17 2 40 40 H 1.09008 * 109.46917 * 305.20576 * 19 17 2 41 41 H 1.08998 * 109.47497 * 59.99356 * 25 24 23 42 42 H 1.09001 * 109.47573 * 180.02562 * 25 24 23 43 43 H 1.09003 * 109.47268 * 299.99651 * 25 24 23 44 44 H 1.08998 * 109.46904 * 60.00234 * 26 24 23 45 45 H 1.08992 * 109.47474 * 180.02562 * 26 24 23 46 46 H 1.09007 * 109.46923 * 300.00137 * 26 24 23 47 47 H 1.09003 * 109.46518 * 64.81562 * 27 24 23 48 48 H 1.09004 * 109.47097 * 184.80804 * 27 24 23 49 49 H 1.08993 * 109.47458 * 304.81000 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.5640 1.6462 -1.4368 5 1 2.9452 0.8012 -2.0101 6 6 1.4621 2.4302 -2.1628 7 6 2.6494 3.2217 -2.7315 8 7 3.4092 2.8460 -1.5296 9 6 4.4465 3.3793 -0.8123 10 1 4.8679 2.8307 0.0172 11 6 4.9566 4.6251 -1.1510 12 7 4.3779 5.3391 -2.0933 13 14 6.4642 5.2883 -0.2697 14 1 7.6358 4.4295 -0.5783 15 1 6.7337 6.6757 -0.7255 16 1 6.2217 5.2869 1.1953 17 6 2.1389 -1.1671 -0.0005 18 8 3.3484 -1.1691 0.0895 19 6 1.3897 -2.4698 -0.1129 20 6 2.3535 -3.6184 0.0384 21 7 2.7684 -4.1610 1.1833 22 7 3.5847 -5.1140 0.8838 23 7 3.6901 -5.1805 -0.3980 24 6 4.5243 -6.1340 -1.1336 25 6 5.1559 -7.1227 -0.1515 26 6 3.6606 -6.8966 -2.1403 27 6 5.6276 -5.3787 -1.8773 28 7 2.9452 -4.2733 -0.9301 29 1 -0.3633 -0.0001 1.0276 30 1 -0.3633 0.8899 -0.5139 31 1 -0.3632 -0.8900 -0.5139 32 1 1.5717 2.0495 0.4324 33 1 3.1070 1.1632 0.5912 34 1 0.9150 1.8489 -2.9051 35 1 0.8152 3.0077 -1.5023 36 1 2.4610 4.2925 -2.8089 37 1 3.0534 2.7975 -3.6506 38 1 4.7346 6.2094 -2.3303 39 1 0.9056 -2.5277 -1.0878 40 1 0.6345 -2.5235 0.6715 41 1 4.3699 -7.6607 0.3784 42 1 5.7769 -7.8319 -0.6986 43 1 5.7712 -6.5794 0.5658 44 1 3.2107 -6.1923 -2.8399 45 1 4.2811 -7.6063 -2.6873 46 1 2.8746 -7.4348 -1.6104 47 1 6.2936 -4.9052 -1.1558 48 1 6.1955 -6.0773 -2.4919 49 1 5.1800 -4.6156 -2.5139 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234498923.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:18 Heat of formation + Delta-G solvation = 127.442307 kcal Electronic energy + Delta-G solvation = -29624.868240 eV Core-core repulsion = 25626.640754 eV Total energy + Delta-G solvation = -3998.227486 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -45.39360 -41.12504 -39.69675 -38.60076 -36.49137 -34.68743 -34.32833 -34.15578 -31.28088 -29.92559 -29.36027 -28.54986 -28.39945 -27.15802 -25.63330 -25.43417 -24.41488 -23.13147 -21.63977 -21.08003 -20.22426 -18.80942 -18.47537 -18.05744 -17.72254 -17.31666 -17.11585 -16.50562 -15.97158 -15.70145 -15.37603 -15.20180 -15.12663 -14.92331 -14.50920 -14.30034 -14.18475 -13.90222 -13.66911 -13.48119 -13.45401 -13.25552 -13.23634 -13.09512 -12.91577 -12.87457 -12.86721 -12.63728 -12.57365 -12.47790 -12.25297 -12.17540 -11.95170 -11.87731 -11.80865 -11.64682 -11.35883 -11.25461 -10.90010 -10.75287 -9.58839 -8.91935 -7.92488 -5.27000 0.20818 0.91394 1.04634 1.39744 1.43353 1.49730 1.57736 2.04405 2.45243 2.80398 3.14182 3.25682 3.47132 3.49981 3.57650 3.58824 3.65795 3.84750 4.15718 4.22883 4.31796 4.37775 4.41063 4.44047 4.50497 4.52821 4.53417 4.58738 4.67528 4.69767 4.71528 4.73001 4.77340 4.88409 4.93758 4.99589 5.00220 5.06053 5.09388 5.11530 5.20807 5.23370 5.34546 5.46692 5.54559 5.75880 5.95783 6.41962 6.89912 7.15053 7.32645 7.57720 8.59417 9.22844 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.013352 B = 0.002707 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.628112 B =10342.681054 C =11326.736362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.603 5.603 3 C 0.133 3.867 4 C 0.135 3.865 5 H 0.023 0.977 6 C -0.123 4.123 7 C 0.134 3.866 8 N -0.632 5.632 9 C -0.227 4.227 10 H 0.068 0.932 11 C -0.061 4.061 12 N -0.946 5.946 13 Si 0.973 3.027 14 H -0.287 1.287 15 H -0.286 1.286 16 H -0.273 1.273 17 C 0.510 3.490 18 O -0.593 6.593 19 C -0.032 4.032 20 C 0.173 3.827 21 N -0.309 5.309 22 N -0.079 5.079 23 N -0.120 5.120 24 C 0.162 3.838 25 C -0.148 4.148 26 C -0.149 4.149 27 C -0.159 4.159 28 N -0.306 5.306 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.106 0.894 32 H 0.095 0.905 33 H 0.035 0.965 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.051 0.949 37 H 0.009 0.991 38 H 0.250 0.750 39 H 0.158 0.842 40 H 0.159 0.841 41 H 0.072 0.928 42 H 0.125 0.875 43 H 0.059 0.941 44 H 0.066 0.934 45 H 0.124 0.876 46 H 0.066 0.934 47 H 0.049 0.951 48 H 0.128 0.872 49 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.876 -26.887 -0.579 29.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.335 5.335 3 C 0.008 3.992 4 C 0.028 3.972 5 H 0.041 0.959 6 C -0.161 4.161 7 C 0.009 3.991 8 N -0.358 5.358 9 C -0.356 4.356 10 H 0.086 0.914 11 C -0.255 4.255 12 N -0.595 5.595 13 Si 0.801 3.199 14 H -0.214 1.214 15 H -0.212 1.212 16 H -0.199 1.199 17 C 0.297 3.703 18 O -0.473 6.473 19 C -0.074 4.074 20 C -0.110 4.110 21 N -0.179 5.179 22 N -0.071 5.071 23 N -0.036 5.036 24 C 0.083 3.917 25 C -0.206 4.206 26 C -0.208 4.208 27 C -0.217 4.217 28 N -0.157 5.157 29 H 0.095 0.905 30 H 0.105 0.895 31 H 0.125 0.875 32 H 0.113 0.887 33 H 0.053 0.947 34 H 0.114 0.886 35 H 0.112 0.888 36 H 0.069 0.931 37 H 0.027 0.973 38 H 0.059 0.941 39 H 0.176 0.824 40 H 0.177 0.823 41 H 0.091 0.909 42 H 0.143 0.857 43 H 0.078 0.922 44 H 0.086 0.914 45 H 0.142 0.858 46 H 0.085 0.915 47 H 0.068 0.932 48 H 0.147 0.853 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.637 -27.113 -0.124 28.775 hybrid contribution 1.300 1.325 0.123 1.860 sum -8.337 -25.788 -0.001 27.102 Atomic orbital electron populations 1.22310 0.75691 1.05831 1.03934 1.47864 1.09094 1.04289 1.72270 1.21429 0.96112 0.84792 0.96833 1.22478 0.90261 0.89669 0.94804 0.95948 1.23501 0.94935 0.97846 0.99775 1.22198 0.89367 0.99075 0.88469 1.45988 1.38431 1.22923 1.28463 1.19099 1.07945 0.99139 1.09386 0.91380 1.25540 1.02556 0.97003 1.00385 1.69991 1.42356 1.12528 1.34618 0.85240 0.79309 0.77000 0.78374 1.21429 1.21151 1.19851 1.20887 0.87392 0.86271 0.75706 1.90747 1.17204 1.87970 1.51413 1.20104 0.94607 0.83046 1.09675 1.25207 1.00917 1.00092 0.84786 1.75726 1.10244 1.05934 1.25969 1.78778 1.14736 1.15463 0.98148 1.50938 1.27544 1.21530 1.03592 1.21996 0.89945 0.86609 0.93185 1.22131 1.01930 0.97990 0.98548 1.22223 1.00257 1.00646 0.97644 1.22293 0.96903 1.01825 1.00683 1.74503 1.09059 1.04162 1.27984 0.90477 0.89458 0.87534 0.88668 0.94673 0.88611 0.88771 0.93110 0.97336 0.94116 0.82415 0.82306 0.90912 0.85659 0.92202 0.91443 0.85774 0.91510 0.93166 0.85329 0.92531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.89 10.14 127.77 1.30 2.18 16 2 N -0.60 -16.59 2.88 -846.77 -2.44 -19.03 16 3 C 0.13 4.96 5.34 86.38 0.46 5.42 16 4 C 0.14 5.76 4.28 41.79 0.18 5.93 16 5 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 6 C -0.12 -4.33 8.02 30.96 0.25 -4.08 16 7 C 0.13 6.57 7.59 83.21 0.63 7.20 16 8 N -0.63 -34.36 3.64 -713.37 -2.60 -36.96 16 9 C -0.23 -13.71 10.54 84.04 0.89 -12.82 16 10 H 0.07 4.12 7.83 -2.91 -0.02 4.09 16 11 C -0.06 -3.68 5.50 84.86 0.47 -3.21 16 12 N -0.95 -58.83 11.42 21.65 0.25 -58.58 16 13 Si 0.97 48.43 29.56 68.60 2.03 50.46 16 14 H -0.29 -14.23 7.11 99.48 0.71 -13.53 16 15 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 16 H -0.27 -13.03 7.11 99.48 0.71 -12.32 16 17 C 0.51 16.11 7.62 87.66 0.67 16.78 16 18 O -0.59 -26.63 15.68 -3.04 -0.05 -26.68 16 19 C -0.03 -0.68 4.76 29.10 0.14 -0.54 16 20 C 0.17 5.01 6.87 138.55 0.95 5.96 16 21 N -0.31 -10.02 12.50 -51.26 -0.64 -10.66 16 22 N -0.08 -2.38 12.23 37.02 0.45 -1.92 16 23 N -0.12 -3.08 3.73 -152.40 -0.57 -3.65 16 24 C 0.16 2.56 1.30 3.60 0.00 2.57 16 25 C -0.15 -1.69 7.93 71.98 0.57 -1.12 16 26 C -0.15 -1.51 8.59 71.98 0.62 -0.89 16 27 C -0.16 -2.51 8.73 71.98 0.63 -1.88 16 28 N -0.31 -8.69 11.78 -51.20 -0.60 -9.29 16 29 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.09 1.14 8.07 -2.39 -0.02 1.12 16 31 H 0.11 0.75 6.55 -2.39 -0.02 0.73 16 32 H 0.10 3.24 7.76 -2.39 -0.02 3.23 16 33 H 0.03 1.62 7.52 -2.39 -0.02 1.61 16 34 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 35 H 0.09 3.05 7.94 -2.39 -0.02 3.03 16 36 H 0.05 2.75 6.85 -2.39 -0.02 2.74 16 37 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 38 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 39 H 0.16 2.14 7.82 -2.39 -0.02 2.12 16 40 H 0.16 2.09 7.83 -2.38 -0.02 2.07 16 41 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.13 0.48 8.14 -2.39 -0.02 0.46 16 43 H 0.06 0.90 8.10 -2.39 -0.02 0.89 16 44 H 0.07 0.86 8.10 -2.39 -0.02 0.84 16 45 H 0.12 0.38 8.14 -2.39 -0.02 0.36 16 46 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 47 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 48 H 0.13 0.96 8.14 -2.39 -0.02 0.94 16 49 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -91.43 404.21 4.51 -86.92 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: 0.93 Total: 7.90 kcal Atomic # 6 Polarization: 13.75 SS G_CDS: 7.75 Total: 21.50 kcal Atomic # 7 Polarization: -133.95 SS G_CDS: -6.15 Total: -140.10 kcal Atomic # 8 Polarization: -26.63 SS G_CDS: -0.05 Total: -26.68 kcal Atomic # 14 Polarization: 48.43 SS G_CDS: 2.03 Total: 50.46 kcal Total: -91.43 4.51 -86.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234498923.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 214.363 kcal (2) G-P(sol) polarization free energy of solvation -91.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds