Wall clock time and date at job start Tue Mar 31 2020 19:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46502 * 120.00306 * 2 1 4 4 C 1.52998 * 109.47012 * 270.27499 * 3 2 1 5 5 H 1.08991 * 112.74066 * 43.12268 * 4 3 2 6 6 C 1.53497 * 113.52024 * 272.32896 * 4 3 2 7 7 C 1.53752 * 83.26148 * 218.97697 * 6 4 3 8 8 N 1.47064 * 87.88493 * 26.24037 * 7 6 4 9 9 C 1.36937 * 136.05696 * 152.96635 * 8 7 6 10 10 H 1.08001 * 120.00024 * 176.66889 * 9 8 7 11 11 C 1.38809 * 119.99955 * 356.39281 * 9 8 7 12 12 N 1.31617 * 120.00254 * 0.27215 * 11 9 8 13 13 Si 1.86806 * 120.00063 * 180.27718 * 11 9 8 14 14 H 1.48499 * 109.46949 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47177 * 119.99537 * 13 11 9 16 16 H 1.48495 * 109.46905 * 239.99907 * 13 11 9 17 17 C 1.34780 * 120.00056 * 179.97438 * 2 1 3 18 18 O 1.21279 * 120.00345 * 179.97438 * 17 2 1 19 19 C 1.50708 * 119.99779 * 0.02562 * 17 2 1 20 20 C 1.50701 * 109.46908 * 179.97438 * 19 17 2 21 21 N 1.33312 * 126.55049 * 90.02511 * 20 19 17 22 22 N 1.28991 * 107.35686 * 179.97438 * 21 20 19 23 23 N 1.28793 * 108.72451 * 0.02562 * 22 21 20 24 24 C 1.46503 * 125.44632 * 180.02562 * 23 22 21 25 25 C 1.52998 * 109.47258 * 359.97438 * 24 23 22 26 26 C 1.52995 * 109.46661 * 119.97531 * 24 23 22 27 27 C 1.52992 * 109.46773 * 239.97457 * 24 23 22 28 28 N 1.28880 * 109.09955 * 359.72869 * 23 22 21 29 29 H 1.09010 * 109.46879 * 93.32989 * 1 2 3 30 30 H 1.09002 * 109.47413 * 213.33113 * 1 2 3 31 31 H 1.09002 * 109.47148 * 333.33340 * 1 2 3 32 32 H 1.08999 * 109.47204 * 150.27022 * 3 2 1 33 33 H 1.08997 * 109.47086 * 30.27498 * 3 2 1 34 34 H 1.09009 * 114.20585 * 332.73778 * 6 4 3 35 35 H 1.09004 * 114.20699 * 105.35656 * 6 4 3 36 36 H 1.08992 * 113.46494 * 271.50857 * 7 6 4 37 37 H 1.08998 * 113.55255 * 140.98485 * 7 6 4 38 38 H 0.96998 * 120.00460 * 179.97438 * 12 11 9 39 39 H 1.08997 * 109.46727 * 299.99829 * 19 17 2 40 40 H 1.08998 * 109.46957 * 59.99820 * 19 17 2 41 41 H 1.09001 * 109.47377 * 59.99591 * 25 24 23 42 42 H 1.08998 * 109.47048 * 180.02562 * 25 24 23 43 43 H 1.09005 * 109.46939 * 299.99892 * 25 24 23 44 44 H 1.09002 * 109.47510 * 59.99829 * 26 24 23 45 45 H 1.09007 * 109.46856 * 179.97438 * 26 24 23 46 46 H 1.09001 * 109.47483 * 299.99523 * 26 24 23 47 47 H 1.08997 * 109.47425 * 60.00540 * 27 24 23 48 48 H 1.09007 * 109.46914 * 180.02562 * 27 24 23 49 49 H 1.08999 * 109.47746 * 300.00031 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4465 1.7138 -1.4425 5 1 1.5732 1.5815 -2.0809 6 6 3.7370 1.1421 -2.0458 7 6 3.8493 2.5416 -2.6727 8 7 3.0514 3.0502 -1.5469 9 6 2.9235 4.2445 -0.8891 10 1 2.1943 4.3507 -0.0995 11 6 3.7349 5.3168 -1.2333 12 7 4.6236 5.1874 -2.1955 13 14 3.5658 6.9436 -0.3308 14 1 2.5022 6.8299 0.6993 15 1 4.8549 7.2832 0.3234 16 1 3.2052 8.0111 -1.2981 17 6 2.1389 -1.1672 0.0005 18 8 3.3516 -1.1673 0.0001 19 6 1.3853 -2.4724 0.0005 20 6 2.3646 -3.6178 0.0005 21 7 2.8801 -4.2215 1.0715 22 7 3.6715 -5.1477 0.6474 23 7 3.6652 -5.1392 -0.6405 24 6 4.4358 -6.0414 -1.4999 25 6 5.2533 -6.9992 -0.6308 26 6 3.4793 -6.8447 -2.3834 27 6 5.3794 -5.2225 -2.3828 28 7 2.8679 -4.2141 -1.0522 29 1 -0.3633 -0.0597 -1.0260 30 1 -0.3634 -0.8586 0.5647 31 1 -0.3633 0.9184 0.4612 32 1 3.1520 1.1371 0.5096 33 1 1.6106 2.0271 0.5181 34 1 4.5105 0.9140 -1.3124 35 1 3.5765 0.3400 -2.7663 36 1 3.3456 2.6275 -3.6354 37 1 4.8677 2.9293 -2.6930 38 1 5.1904 5.9368 -2.4363 39 1 0.7583 -2.5298 0.8903 40 1 0.7590 -2.5302 -0.8897 41 1 4.5810 -7.5826 -0.0017 42 1 5.8269 -7.6702 -1.2702 43 1 5.9347 -6.4268 -0.0013 44 1 2.8969 -6.1624 -3.0025 45 1 4.0526 -7.5157 -3.0231 46 1 2.8070 -7.4282 -1.7543 47 1 6.0609 -4.6502 -1.7533 48 1 5.9525 -5.8938 -3.0225 49 1 4.7971 -4.5401 -3.0020 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234498925.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:24 Heat of formation + Delta-G solvation = 155.455284 kcal Electronic energy + Delta-G solvation = -29724.785196 eV Core-core repulsion = 25727.772443 eV Total energy + Delta-G solvation = -3997.012752 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -44.36759 -39.80293 -38.01005 -37.73425 -35.21386 -33.61429 -33.24884 -32.14504 -30.11299 -28.21972 -27.97802 -27.83739 -27.71331 -26.14888 -24.65690 -23.35272 -23.00202 -21.78396 -20.78374 -19.18416 -19.00300 -17.50753 -17.25419 -16.83109 -16.51569 -16.04650 -15.62350 -14.83714 -14.72120 -14.55871 -14.45065 -13.91508 -13.79398 -13.64260 -13.39254 -13.31569 -12.98103 -12.90944 -12.78138 -12.67683 -12.34318 -12.28588 -12.10454 -11.97474 -11.89487 -11.89121 -11.47893 -11.42727 -11.03106 -10.92518 -10.85493 -10.81533 -10.69111 -10.34585 -10.27538 -9.79039 -9.70333 -9.59240 -9.36976 -8.74030 -8.25845 -6.81541 -5.71045 -3.04442 1.24292 1.74277 2.12050 2.78703 3.18873 3.41248 3.45629 3.48769 3.69121 3.97926 4.10268 4.20989 4.44687 4.48019 4.60335 4.93200 4.97363 5.03845 5.05908 5.10496 5.13271 5.20735 5.23127 5.31067 5.33666 5.44391 5.49048 5.52214 5.56269 5.65348 5.67837 5.71397 5.73956 5.87460 5.95655 6.07045 6.13343 6.19538 6.47838 6.59150 6.71018 6.85762 6.87879 7.32025 7.51246 7.60537 7.66890 8.04736 8.35499 8.38689 9.07803 9.75380 10.71150 11.45806 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.018933 B = 0.002498 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.529274 B =11208.209681 C =11985.409166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.609 5.609 3 C 0.117 3.883 4 C 0.131 3.869 5 H 0.040 0.960 6 C -0.153 4.153 7 C 0.148 3.852 8 N -0.601 5.601 9 C -0.216 4.216 10 H 0.080 0.920 11 C -0.008 4.008 12 N -0.918 5.918 13 Si 0.911 3.089 14 H -0.280 1.280 15 H -0.290 1.290 16 H -0.291 1.291 17 C 0.518 3.482 18 O -0.522 6.522 19 C -0.043 4.043 20 C 0.187 3.813 21 N -0.278 5.278 22 N -0.064 5.064 23 N -0.130 5.130 24 C 0.179 3.821 25 C -0.152 4.152 26 C -0.157 4.157 27 C -0.160 4.160 28 N -0.293 5.293 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.047 0.953 36 H 0.020 0.980 37 H 0.073 0.927 38 H 0.252 0.748 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.074 0.926 42 H 0.088 0.912 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.089 0.911 46 H 0.066 0.934 47 H 0.069 0.931 48 H 0.088 0.912 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.287 -26.230 0.089 26.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.344 5.344 3 C -0.006 4.006 4 C 0.023 3.977 5 H 0.058 0.942 6 C -0.191 4.191 7 C 0.022 3.978 8 N -0.327 5.327 9 C -0.344 4.344 10 H 0.097 0.903 11 C -0.205 4.205 12 N -0.565 5.565 13 Si 0.742 3.258 14 H -0.205 1.205 15 H -0.217 1.217 16 H -0.218 1.218 17 C 0.303 3.697 18 O -0.397 6.397 19 C -0.086 4.086 20 C -0.096 4.096 21 N -0.149 5.149 22 N -0.057 5.057 23 N -0.044 5.044 24 C 0.098 3.902 25 C -0.210 4.210 26 C -0.216 4.216 27 C -0.218 4.218 28 N -0.143 5.143 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.104 0.896 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.065 0.935 36 H 0.038 0.962 37 H 0.092 0.908 38 H 0.062 0.938 39 H 0.140 0.860 40 H 0.138 0.862 41 H 0.093 0.907 42 H 0.107 0.893 43 H 0.095 0.905 44 H 0.096 0.904 45 H 0.108 0.892 46 H 0.085 0.915 47 H 0.088 0.912 48 H 0.107 0.893 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.135 -26.345 0.410 26.844 hybrid contribution -0.621 1.489 0.094 1.616 sum -5.756 -24.857 0.503 25.519 Atomic orbital electron populations 1.21853 0.79818 1.03194 1.01927 1.47828 1.06820 1.06371 1.73335 1.21942 0.97300 0.82077 0.99246 1.22430 0.95057 0.86961 0.93236 0.94247 1.23641 0.98324 0.97026 1.00126 1.22153 0.97898 0.87992 0.89739 1.45633 1.46222 1.06010 1.34865 1.18918 1.16071 0.86569 1.12813 0.90259 1.24792 0.98548 0.98192 0.98959 1.69849 1.24437 1.30671 1.31520 0.86063 0.77326 0.83723 0.78738 1.20475 1.21704 1.21825 1.20015 0.88018 0.84557 0.77132 1.90750 1.13604 1.86915 1.48436 1.19920 0.94975 0.87112 1.06563 1.24615 1.00701 0.99529 0.84742 1.75781 1.08306 1.04695 1.26101 1.78873 1.16111 1.16480 0.94226 1.50402 1.27425 1.21785 1.04779 1.21362 0.91143 0.88073 0.89597 1.22083 1.00310 0.98604 1.00045 1.22222 0.99356 1.00334 0.99651 1.22240 0.99032 1.00795 0.99763 1.74545 1.08289 1.03692 1.27794 0.92380 0.91408 0.90562 0.89613 0.90731 0.90132 0.93487 0.96228 0.90833 0.93763 0.85979 0.86203 0.90715 0.89337 0.90539 0.90379 0.89247 0.91538 0.91170 0.89297 0.90261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.73 10.23 59.84 0.61 1.34 16 2 N -0.61 -8.84 2.87 -181.57 -0.52 -9.36 16 3 C 0.12 2.18 5.40 -4.04 -0.02 2.15 16 4 C 0.13 2.79 4.31 -72.39 -0.31 2.48 16 5 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 6 C -0.15 -3.32 7.47 -26.08 -0.19 -3.51 16 7 C 0.15 3.72 7.49 -8.37 -0.06 3.66 16 8 N -0.60 -15.81 3.65 -176.84 -0.64 -16.45 16 9 C -0.22 -6.09 10.55 -15.06 -0.16 -6.25 16 10 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 11 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 12 N -0.92 -27.95 11.45 55.49 0.64 -27.32 16 13 Si 0.91 22.42 29.55 -169.99 -5.02 17.39 16 14 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 15 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 16 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 17 C 0.52 7.99 7.67 -10.98 -0.08 7.91 16 18 O -0.52 -10.46 15.05 5.56 0.08 -10.37 16 19 C -0.04 -0.48 4.93 -29.03 -0.14 -0.63 16 20 C 0.19 2.67 6.86 -156.63 -1.07 1.59 16 21 N -0.28 -4.33 12.50 32.45 0.41 -3.92 16 22 N -0.06 -0.92 12.24 60.35 0.74 -0.18 16 23 N -0.13 -1.61 3.73 0.48 0.00 -1.61 16 24 C 0.18 1.44 1.30 -131.83 -0.17 1.27 16 25 C -0.15 -0.93 7.91 37.16 0.29 -0.64 16 26 C -0.16 -0.91 8.66 37.15 0.32 -0.59 16 27 C -0.16 -1.23 8.67 37.15 0.32 -0.91 16 28 N -0.29 -4.05 11.83 32.46 0.38 -3.67 16 29 H 0.06 0.51 8.14 -51.92 -0.42 0.08 16 30 H 0.07 0.44 6.58 -51.93 -0.34 0.10 16 31 H 0.08 0.71 7.86 -51.93 -0.41 0.31 16 32 H 0.09 1.81 7.13 -51.93 -0.37 1.44 16 33 H 0.07 1.35 7.87 -51.93 -0.41 0.94 16 34 H 0.08 1.87 7.93 -51.92 -0.41 1.46 16 35 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.07 2.05 6.98 -51.93 -0.36 1.69 16 38 H 0.25 7.41 8.31 -40.82 -0.34 7.08 16 39 H 0.12 1.03 7.40 -51.93 -0.38 0.65 16 40 H 0.12 1.03 8.11 -51.93 -0.42 0.61 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.09 0.28 8.14 -51.92 -0.42 -0.14 16 46 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 47 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.09 0.40 8.14 -51.92 -0.42 -0.02 16 49 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 402.96 15.07 6.07 6.07 Total: -1.00 -37.33 402.96 -6.79 -44.12 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -8.15 Total: -2.24 kcal Atomic # 6 Polarization: 8.30 SS G_CDS: -0.77 Total: 7.53 kcal Atomic # 7 Polarization: -63.51 SS G_CDS: 1.00 Total: -62.51 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.08 Total: -10.37 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -37.33 -6.79 -44.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234498925.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.576 kcal (2) G-P(sol) polarization free energy of solvation -37.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 162.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 155.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds