Wall clock time and date at job start Tue Mar 31 2020 19:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46502 * 120.00306 * 2 1 4 4 C 1.52998 * 109.47012 * 270.27499 * 3 2 1 5 5 H 1.08991 * 112.74066 * 43.12268 * 4 3 2 6 6 C 1.53497 * 113.52024 * 272.32896 * 4 3 2 7 7 C 1.53752 * 83.26148 * 218.97697 * 6 4 3 8 8 N 1.47064 * 87.88493 * 26.24037 * 7 6 4 9 9 C 1.36937 * 136.05696 * 152.96635 * 8 7 6 10 10 H 1.08001 * 120.00024 * 176.66889 * 9 8 7 11 11 C 1.38809 * 119.99955 * 356.39281 * 9 8 7 12 12 N 1.31617 * 120.00254 * 0.27215 * 11 9 8 13 13 Si 1.86806 * 120.00063 * 180.27718 * 11 9 8 14 14 H 1.48499 * 109.46949 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47177 * 119.99537 * 13 11 9 16 16 H 1.48495 * 109.46905 * 239.99907 * 13 11 9 17 17 C 1.34780 * 120.00056 * 179.97438 * 2 1 3 18 18 O 1.21279 * 120.00345 * 179.97438 * 17 2 1 19 19 C 1.50708 * 119.99779 * 0.02562 * 17 2 1 20 20 C 1.50701 * 109.46908 * 179.97438 * 19 17 2 21 21 N 1.33312 * 126.55049 * 90.02511 * 20 19 17 22 22 N 1.28991 * 107.35686 * 179.97438 * 21 20 19 23 23 N 1.28793 * 108.72451 * 0.02562 * 22 21 20 24 24 C 1.46503 * 125.44632 * 180.02562 * 23 22 21 25 25 C 1.52998 * 109.47258 * 359.97438 * 24 23 22 26 26 C 1.52995 * 109.46661 * 119.97531 * 24 23 22 27 27 C 1.52992 * 109.46773 * 239.97457 * 24 23 22 28 28 N 1.28880 * 109.09955 * 359.72869 * 23 22 21 29 29 H 1.09010 * 109.46879 * 93.32989 * 1 2 3 30 30 H 1.09002 * 109.47413 * 213.33113 * 1 2 3 31 31 H 1.09002 * 109.47148 * 333.33340 * 1 2 3 32 32 H 1.08999 * 109.47204 * 150.27022 * 3 2 1 33 33 H 1.08997 * 109.47086 * 30.27498 * 3 2 1 34 34 H 1.09009 * 114.20585 * 332.73778 * 6 4 3 35 35 H 1.09004 * 114.20699 * 105.35656 * 6 4 3 36 36 H 1.08992 * 113.46494 * 271.50857 * 7 6 4 37 37 H 1.08998 * 113.55255 * 140.98485 * 7 6 4 38 38 H 0.96998 * 120.00460 * 179.97438 * 12 11 9 39 39 H 1.08997 * 109.46727 * 299.99829 * 19 17 2 40 40 H 1.08998 * 109.46957 * 59.99820 * 19 17 2 41 41 H 1.09001 * 109.47377 * 59.99591 * 25 24 23 42 42 H 1.08998 * 109.47048 * 180.02562 * 25 24 23 43 43 H 1.09005 * 109.46939 * 299.99892 * 25 24 23 44 44 H 1.09002 * 109.47510 * 59.99829 * 26 24 23 45 45 H 1.09007 * 109.46856 * 179.97438 * 26 24 23 46 46 H 1.09001 * 109.47483 * 299.99523 * 26 24 23 47 47 H 1.08997 * 109.47425 * 60.00540 * 27 24 23 48 48 H 1.09007 * 109.46914 * 180.02562 * 27 24 23 49 49 H 1.08999 * 109.47746 * 300.00031 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4465 1.7138 -1.4425 5 1 1.5732 1.5815 -2.0809 6 6 3.7370 1.1421 -2.0458 7 6 3.8493 2.5416 -2.6727 8 7 3.0514 3.0502 -1.5469 9 6 2.9235 4.2445 -0.8891 10 1 2.1943 4.3507 -0.0995 11 6 3.7349 5.3168 -1.2333 12 7 4.6236 5.1874 -2.1955 13 14 3.5658 6.9436 -0.3308 14 1 2.5022 6.8299 0.6993 15 1 4.8549 7.2832 0.3234 16 1 3.2052 8.0111 -1.2981 17 6 2.1389 -1.1672 0.0005 18 8 3.3516 -1.1673 0.0001 19 6 1.3853 -2.4724 0.0005 20 6 2.3646 -3.6178 0.0005 21 7 2.8801 -4.2215 1.0715 22 7 3.6715 -5.1477 0.6474 23 7 3.6652 -5.1392 -0.6405 24 6 4.4358 -6.0414 -1.4999 25 6 5.2533 -6.9992 -0.6308 26 6 3.4793 -6.8447 -2.3834 27 6 5.3794 -5.2225 -2.3828 28 7 2.8679 -4.2141 -1.0522 29 1 -0.3633 -0.0597 -1.0260 30 1 -0.3634 -0.8586 0.5647 31 1 -0.3633 0.9184 0.4612 32 1 3.1520 1.1371 0.5096 33 1 1.6106 2.0271 0.5181 34 1 4.5105 0.9140 -1.3124 35 1 3.5765 0.3400 -2.7663 36 1 3.3456 2.6275 -3.6354 37 1 4.8677 2.9293 -2.6930 38 1 5.1904 5.9368 -2.4363 39 1 0.7583 -2.5298 0.8903 40 1 0.7590 -2.5302 -0.8897 41 1 4.5810 -7.5826 -0.0017 42 1 5.8269 -7.6702 -1.2702 43 1 5.9347 -6.4268 -0.0013 44 1 2.8969 -6.1624 -3.0025 45 1 4.0526 -7.5157 -3.0231 46 1 2.8070 -7.4282 -1.7543 47 1 6.0609 -4.6502 -1.7533 48 1 5.9525 -5.8938 -3.0225 49 1 4.7971 -4.5401 -3.0020 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234498925.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:23 Heat of formation + Delta-G solvation = 129.375135 kcal Electronic energy + Delta-G solvation = -29725.916116 eV Core-core repulsion = 25727.772443 eV Total energy + Delta-G solvation = -3998.143673 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -45.35308 -41.10254 -39.64974 -38.56568 -36.47265 -34.64491 -34.30075 -34.11320 -31.24590 -29.93205 -29.31615 -28.50888 -28.37147 -27.20774 -25.59688 -25.41419 -24.39187 -23.13117 -21.60125 -21.06271 -20.21528 -18.78900 -18.45891 -18.01920 -17.69391 -17.30094 -17.01443 -16.50100 -15.96211 -15.65999 -15.33515 -15.22519 -15.10571 -14.87052 -14.61863 -14.14738 -14.03061 -13.84504 -13.75529 -13.46918 -13.42488 -13.23418 -13.20298 -13.03451 -12.98463 -12.84455 -12.82582 -12.66959 -12.54274 -12.49757 -12.22023 -12.14164 -11.91873 -11.82477 -11.79837 -11.66464 -11.30439 -11.19179 -10.86384 -10.71047 -9.59571 -8.91592 -7.88751 -5.23850 0.25041 0.95119 1.08412 1.45020 1.47249 1.56962 1.63644 2.05762 2.48415 2.83401 3.18349 3.31067 3.40518 3.53677 3.61405 3.66322 3.69322 3.87513 4.18880 4.24127 4.33613 4.36910 4.41578 4.46308 4.47599 4.53381 4.54600 4.61789 4.68808 4.70392 4.72939 4.73982 4.80217 4.83274 4.86489 4.99886 5.03499 5.04932 5.07525 5.12582 5.22105 5.23208 5.38097 5.47384 5.51948 5.72954 5.93480 6.44259 6.89625 7.19295 7.36773 7.60713 8.61761 9.29012 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.018933 B = 0.002498 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.529274 B =11208.209681 C =11985.409166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.605 5.605 3 C 0.132 3.868 4 C 0.140 3.860 5 H 0.059 0.941 6 C -0.130 4.130 7 C 0.144 3.856 8 N -0.629 5.629 9 C -0.220 4.220 10 H 0.092 0.908 11 C -0.074 4.074 12 N -0.957 5.957 13 Si 0.981 3.019 14 H -0.259 1.259 15 H -0.296 1.296 16 H -0.293 1.293 17 C 0.513 3.487 18 O -0.578 6.578 19 C -0.033 4.033 20 C 0.175 3.825 21 N -0.309 5.309 22 N -0.080 5.080 23 N -0.120 5.120 24 C 0.162 3.838 25 C -0.149 4.149 26 C -0.150 4.150 27 C -0.157 4.157 28 N -0.305 5.305 29 H 0.074 0.926 30 H 0.106 0.894 31 H 0.080 0.920 32 H 0.052 0.948 33 H 0.081 0.919 34 H 0.059 0.941 35 H 0.069 0.931 36 H 0.021 0.979 37 H 0.037 0.963 38 H 0.247 0.753 39 H 0.156 0.844 40 H 0.155 0.845 41 H 0.072 0.928 42 H 0.124 0.876 43 H 0.058 0.942 44 H 0.067 0.933 45 H 0.123 0.877 46 H 0.064 0.936 47 H 0.046 0.954 48 H 0.126 0.874 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.710 -28.123 0.081 29.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.338 5.338 3 C 0.007 3.993 4 C 0.033 3.967 5 H 0.077 0.923 6 C -0.168 4.168 7 C 0.018 3.982 8 N -0.355 5.355 9 C -0.348 4.348 10 H 0.110 0.890 11 C -0.266 4.266 12 N -0.607 5.607 13 Si 0.809 3.191 14 H -0.183 1.183 15 H -0.224 1.224 16 H -0.220 1.220 17 C 0.300 3.700 18 O -0.457 6.457 19 C -0.075 4.075 20 C -0.108 4.108 21 N -0.179 5.179 22 N -0.072 5.072 23 N -0.036 5.036 24 C 0.083 3.917 25 C -0.206 4.206 26 C -0.209 4.209 27 C -0.215 4.215 28 N -0.155 5.155 29 H 0.092 0.908 30 H 0.124 0.876 31 H 0.098 0.902 32 H 0.070 0.930 33 H 0.099 0.901 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.039 0.961 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.174 0.826 40 H 0.172 0.828 41 H 0.091 0.909 42 H 0.143 0.857 43 H 0.077 0.923 44 H 0.086 0.914 45 H 0.142 0.858 46 H 0.084 0.916 47 H 0.066 0.934 48 H 0.145 0.855 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.632 -28.280 0.428 29.295 hybrid contribution 0.166 1.967 0.028 1.974 sum -7.466 -26.314 0.455 27.356 Atomic orbital electron populations 1.22240 0.76261 1.05290 1.03795 1.47845 1.08797 1.04542 1.72638 1.21439 0.96668 0.84334 0.96824 1.22501 0.94910 0.84042 0.95203 0.92343 1.23348 0.98221 0.95681 0.99547 1.22108 0.95979 0.89965 0.90118 1.45943 1.47181 1.07252 1.35126 1.19379 1.15544 0.87204 1.12656 0.88993 1.25710 0.98722 1.01969 1.00242 1.70056 1.25729 1.31347 1.33535 0.84967 0.77331 0.79050 0.77747 1.18266 1.22352 1.21980 1.20749 0.87602 0.85881 0.75729 1.90736 1.16260 1.87765 1.50946 1.20083 0.94247 0.83402 1.09818 1.25155 1.01118 1.00144 0.84432 1.75727 1.09304 1.05621 1.27241 1.78788 1.16418 1.16743 0.95220 1.50932 1.26603 1.21384 1.04654 1.21975 0.91726 0.88072 0.89899 1.22129 0.99940 0.98354 1.00226 1.22235 0.99148 1.00146 0.99337 1.22264 0.98614 1.01113 0.99518 1.74511 1.08764 1.04216 1.28058 0.90779 0.87575 0.90158 0.92961 0.90086 0.92264 0.91233 0.96089 0.94455 0.94453 0.82595 0.82763 0.90935 0.85723 0.92285 0.91441 0.85816 0.91645 0.93440 0.85521 0.91923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.99 10.23 127.77 1.31 2.29 16 2 N -0.61 -16.23 2.87 -846.74 -2.43 -18.66 16 3 C 0.13 4.80 5.40 86.38 0.47 5.27 16 4 C 0.14 5.87 4.31 41.80 0.18 6.05 16 5 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 6 C -0.13 -5.70 7.47 31.01 0.23 -5.47 16 7 C 0.14 7.48 7.49 83.27 0.62 8.10 16 8 N -0.63 -33.41 3.65 -713.39 -2.60 -36.01 16 9 C -0.22 -12.43 10.55 84.03 0.89 -11.55 16 10 H 0.09 4.83 7.83 -2.91 -0.02 4.80 16 11 C -0.07 -4.33 5.50 84.86 0.47 -3.86 16 12 N -0.96 -60.22 11.45 21.65 0.25 -59.97 16 13 Si 0.98 46.60 29.55 68.60 2.03 48.63 16 14 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 15 H -0.30 -14.24 7.11 99.48 0.71 -13.54 16 16 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 17 C 0.51 15.09 7.67 87.66 0.67 15.76 16 18 O -0.58 -23.47 15.05 -3.02 -0.05 -23.51 16 19 C -0.03 -0.66 4.93 29.10 0.14 -0.52 16 20 C 0.17 4.80 6.86 138.55 0.95 5.75 16 21 N -0.31 -9.57 12.50 -51.26 -0.64 -10.21 16 22 N -0.08 -2.28 12.24 37.02 0.45 -1.83 16 23 N -0.12 -2.93 3.73 -152.41 -0.57 -3.49 16 24 C 0.16 2.41 1.30 3.60 0.00 2.42 16 25 C -0.15 -1.60 7.91 71.98 0.57 -1.03 16 26 C -0.15 -1.41 8.66 71.98 0.62 -0.79 16 27 C -0.16 -2.27 8.67 71.98 0.62 -1.65 16 28 N -0.30 -8.22 11.83 -51.20 -0.61 -8.83 16 29 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 30 H 0.11 0.82 6.58 -2.39 -0.02 0.81 16 31 H 0.08 1.20 7.86 -2.39 -0.02 1.18 16 32 H 0.05 2.26 7.13 -2.39 -0.02 2.25 16 33 H 0.08 2.84 7.87 -2.39 -0.02 2.82 16 34 H 0.06 2.87 7.93 -2.38 -0.02 2.85 16 35 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 36 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.04 2.19 6.98 -2.39 -0.02 2.17 16 38 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 39 H 0.16 2.00 7.40 -2.39 -0.02 1.98 16 40 H 0.15 1.98 8.11 -2.39 -0.02 1.96 16 41 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 43 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 44 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.12 0.31 8.14 -2.38 -0.02 0.29 16 46 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 47 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 48 H 0.13 0.82 8.14 -2.38 -0.02 0.80 16 49 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -86.33 402.96 4.52 -81.82 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: 0.93 Total: 11.30 kcal Atomic # 6 Polarization: 13.03 SS G_CDS: 7.75 Total: 20.78 kcal Atomic # 7 Polarization: -132.86 SS G_CDS: -6.15 Total: -139.01 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: -0.05 Total: -23.51 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Total: -86.33 4.52 -81.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234498925.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 211.191 kcal (2) G-P(sol) polarization free energy of solvation -86.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds