Wall clock time and date at job start Tue Mar 31 2020 19:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50702 * 119.99763 * 2 1 4 4 N 1.46498 * 109.47446 * 124.99630 * 3 2 1 5 5 C 1.36459 * 127.13595 * 86.34965 * 4 3 2 6 6 N 1.38573 * 126.47263 * 359.97438 * 5 4 3 7 7 C 1.46901 * 110.99796 * 68.61056 * 6 5 4 8 8 C 1.50702 * 109.47276 * 66.85693 * 7 6 5 9 9 H 1.08003 * 119.99708 * 4.19430 * 8 7 6 10 10 C 1.37876 * 120.00227 * 184.18838 * 8 7 6 11 11 N 1.31513 * 119.99849 * 5.11310 * 10 8 7 12 12 Si 1.86801 * 120.00042 * 185.11595 * 10 8 7 13 13 H 1.48504 * 109.47007 * 65.00217 * 12 10 8 14 14 H 1.48500 * 109.46712 * 184.99738 * 12 10 8 15 15 H 1.48497 * 109.47125 * 304.99947 * 12 10 8 16 16 C 1.46901 * 110.99894 * 192.56153 * 6 5 4 17 17 C 1.52994 * 109.47075 * 162.76247 * 16 6 5 18 18 O 1.42897 * 109.47283 * 67.19403 * 17 16 6 19 19 C 1.42901 * 114.00132 * 184.70598 * 18 17 16 20 20 N 1.31218 * 107.05032 * 180.24617 * 5 4 3 21 21 N 1.28528 * 109.86133 * 359.55816 * 20 5 4 22 22 C 1.30296 * 110.05674 * 0.45445 * 21 20 5 23 23 C 1.50693 * 126.35086 * 179.76164 * 22 21 20 24 24 O 1.42903 * 112.85209 * 230.29292 * 23 22 21 25 25 C 1.53779 * 113.61334 * 99.09570 * 23 22 21 26 26 C 1.53960 * 87.01982 * 220.04721 * 25 23 22 27 27 C 1.53779 * 87.11017 * 25.36514 * 26 25 23 28 28 H 1.07998 * 119.99808 * 179.97438 * 1 2 3 29 29 H 1.08001 * 120.00291 * 0.02562 * 1 2 3 30 30 H 1.08001 * 120.00291 * 179.97438 * 2 1 3 31 31 H 1.08997 * 109.47595 * 4.99100 * 3 2 1 32 32 H 1.09004 * 109.47069 * 244.99602 * 3 2 1 33 33 H 1.08999 * 109.46895 * 186.85672 * 7 6 5 34 34 H 1.08990 * 109.47239 * 306.85552 * 7 6 5 35 35 H 0.96998 * 119.99802 * 179.97438 * 11 10 8 36 36 H 1.09003 * 109.47234 * 282.76119 * 16 6 5 37 37 H 1.09003 * 109.47180 * 42.75973 * 16 6 5 38 38 H 1.09007 * 109.47025 * 187.19395 * 17 16 6 39 39 H 1.09001 * 109.47483 * 307.19199 * 17 16 6 40 40 H 1.09003 * 109.47166 * 304.93507 * 19 18 17 41 41 H 1.09001 * 109.47085 * 64.93436 * 19 18 17 42 42 H 1.09003 * 109.47178 * 184.93652 * 19 18 17 43 43 H 0.96701 * 113.99559 * 309.67314 * 24 23 22 44 44 H 1.09000 * 113.61947 * 334.56637 * 25 23 22 45 45 H 1.09004 * 113.61605 * 105.47497 * 25 23 22 46 46 H 1.08996 * 113.54043 * 270.81496 * 26 25 23 47 47 H 1.09003 * 113.66680 * 139.93416 * 26 25 23 48 48 H 1.09004 * 113.61308 * 220.09129 * 27 26 25 49 49 H 1.08993 * 113.61965 * 89.18770 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9936 1.3321 1.1314 5 6 4.2658 0.8394 1.1640 6 7 4.9327 0.2112 0.1243 7 6 5.2314 1.1584 -0.9581 8 6 6.2337 2.1745 -0.4741 9 1 6.6620 2.0826 0.5130 10 6 6.6039 3.2212 -1.2916 11 7 6.0097 3.3908 -2.4525 12 14 7.9495 4.3983 -0.7502 13 1 9.2386 3.6670 -0.6561 14 1 8.0748 5.4966 -1.7419 15 1 7.6050 4.9671 0.5775 16 6 6.1572 -0.4435 0.6037 17 6 6.6308 -1.4624 -0.4347 18 8 7.0585 -0.7773 -1.6136 19 6 7.4226 -1.6441 -2.6898 20 7 4.7361 1.0677 2.3675 21 7 3.8501 1.6729 3.0751 22 6 2.7673 1.8565 2.3739 23 6 1.5009 2.5239 2.8445 24 8 0.3316 1.7473 2.5762 25 6 1.3789 3.9927 2.4058 26 6 0.8049 4.2792 3.8054 27 6 1.5781 3.0416 4.2905 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5401 0.9353 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3585 2.1317 0.0894 32 1 2.6213 1.4026 -0.9314 33 1 5.6441 0.6182 -1.8100 34 1 4.3154 1.6666 -1.2592 35 1 6.2699 4.1274 -3.0274 36 1 6.9335 0.3060 0.7578 37 1 5.9520 -0.9529 1.5453 38 1 7.4622 -2.0373 -0.0267 39 1 5.8107 -2.1359 -0.6833 40 1 8.1836 -2.3463 -2.3492 41 1 6.5441 -2.1950 -3.0257 42 1 7.8179 -1.0521 -3.5153 43 1 0.2659 1.4384 1.6622 44 1 2.3390 4.4743 2.2206 45 1 0.6629 4.1494 1.5989 46 1 -0.2778 4.1680 3.8630 47 1 1.1592 5.2137 4.2406 48 1 1.0228 2.4315 5.0030 49 1 2.5927 3.2626 4.6216 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262934038.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:49 Heat of formation + Delta-G solvation = 54.301933 kcal Electronic energy + Delta-G solvation = -31476.454294 eV Core-core repulsion = 27442.762452 eV Total energy + Delta-G solvation = -4033.691842 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.45684 -39.31756 -37.92781 -36.37341 -35.97163 -34.51042 -32.56477 -32.55450 -30.04946 -28.92146 -27.09864 -26.32999 -25.77754 -25.55071 -24.89420 -22.89109 -22.04825 -20.90941 -20.41283 -19.92077 -19.29088 -17.44280 -16.79340 -16.32974 -16.15864 -15.96233 -15.69654 -15.34494 -15.03534 -14.87173 -14.62825 -14.35446 -14.22687 -13.78226 -13.63122 -13.37588 -12.73272 -12.48173 -12.40784 -12.28976 -11.87303 -11.68951 -11.58904 -11.34407 -11.22057 -11.11410 -11.02619 -10.97686 -10.87489 -10.75660 -10.51200 -10.36229 -10.15234 -10.05145 -9.99485 -9.69436 -9.62303 -9.51043 -9.08362 -8.70276 -8.39023 -7.41967 -6.07546 -4.10398 1.87671 2.33520 2.91000 3.32464 3.34771 3.40757 3.46809 4.00692 4.33254 4.34576 4.43226 4.55199 4.57028 4.62818 4.73147 4.74915 4.82818 5.15436 5.27301 5.33033 5.51357 5.52257 5.62980 5.69408 5.71254 5.74096 5.79982 5.81540 5.84784 5.88759 5.88982 5.95685 6.04061 6.07653 6.13250 6.27102 6.36137 6.38269 6.46329 6.60816 6.72165 6.95792 7.26007 7.40303 7.51542 7.55731 7.74029 7.88452 8.13554 8.17163 8.93217 9.41288 9.54359 11.00051 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.010694 B = 0.004776 C = 0.003969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2617.679260 B = 5861.256538 C = 7052.115689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.159 4.159 3 C 0.127 3.873 4 N -0.471 5.471 5 C 0.417 3.583 6 N -0.463 5.463 7 C 0.186 3.814 8 C -0.538 4.538 9 H 0.063 0.937 10 C 0.071 3.929 11 N -0.893 5.893 12 Si 0.888 3.112 13 H -0.275 1.275 14 H -0.288 1.288 15 H -0.278 1.278 16 C 0.071 3.929 17 C 0.070 3.930 18 O -0.356 6.356 19 C 0.031 3.969 20 N -0.337 5.337 21 N -0.269 5.269 22 C 0.131 3.869 23 C 0.195 3.805 24 O -0.537 6.537 25 C -0.158 4.158 26 C -0.134 4.134 27 C -0.104 4.104 28 H 0.109 0.891 29 H 0.101 0.899 30 H 0.123 0.877 31 H 0.087 0.913 32 H 0.121 0.879 33 H 0.077 0.923 34 H 0.027 0.973 35 H 0.262 0.738 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.048 0.952 39 H 0.046 0.954 40 H 0.030 0.970 41 H 0.033 0.967 42 H 0.081 0.919 43 H 0.372 0.628 44 H 0.096 0.904 45 H 0.074 0.926 46 H 0.084 0.916 47 H 0.074 0.926 48 H 0.079 0.921 49 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.395 -6.046 3.342 12.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.178 4.178 3 C 0.005 3.995 4 N -0.165 5.165 5 C 0.061 3.939 6 N -0.187 5.187 7 C 0.063 3.937 8 C -0.577 4.577 9 H 0.081 0.919 10 C -0.132 4.132 11 N -0.532 5.532 12 Si 0.716 3.284 13 H -0.201 1.201 14 H -0.214 1.214 15 H -0.203 1.203 16 C -0.056 4.056 17 C -0.007 4.007 18 O -0.274 6.274 19 C -0.066 4.066 20 N -0.182 5.182 21 N -0.109 5.109 22 C -0.137 4.137 23 C 0.151 3.849 24 O -0.345 6.345 25 C -0.197 4.197 26 C -0.171 4.171 27 C -0.142 4.142 28 H 0.127 0.873 29 H 0.119 0.881 30 H 0.141 0.859 31 H 0.106 0.894 32 H 0.139 0.861 33 H 0.094 0.906 34 H 0.045 0.955 35 H 0.071 0.929 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.049 0.951 41 H 0.052 0.948 42 H 0.099 0.901 43 H 0.224 0.776 44 H 0.114 0.886 45 H 0.093 0.907 46 H 0.103 0.897 47 H 0.092 0.908 48 H 0.098 0.902 49 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -9.837 -5.967 4.714 12.434 hybrid contribution 0.533 0.731 -1.584 1.824 sum -9.304 -5.237 3.130 11.126 Atomic orbital electron populations 1.23898 0.95413 1.02564 1.00304 1.23278 0.96070 0.98909 0.99569 1.21088 0.92153 0.96014 0.90291 1.45911 1.12280 1.46808 1.11541 1.22738 0.83271 0.94127 0.93736 1.59488 1.23347 1.29494 1.06402 1.20270 0.96285 0.88909 0.88215 1.21558 1.25138 1.09522 1.01445 0.91898 1.24806 0.96251 0.97250 0.94848 1.69914 1.41397 1.31327 1.10577 0.86701 0.82947 0.80457 0.78281 1.20061 1.21361 1.20313 1.22007 0.91291 0.97019 0.95304 1.22491 0.97098 0.94455 0.86683 1.88303 1.85699 1.31434 1.21983 1.22657 0.98063 0.94758 0.91129 1.74631 1.21679 1.19454 1.02406 1.73736 0.97825 1.13582 1.25787 1.24821 1.00098 1.05702 0.83088 1.20372 0.78210 0.87862 0.98431 1.86556 1.41156 1.72087 1.34698 1.23698 1.02574 0.95097 0.98331 1.22804 1.00162 0.98387 0.95737 1.22936 1.02512 0.95824 0.92935 0.87273 0.88129 0.85889 0.89435 0.86105 0.90589 0.95492 0.92891 0.90122 0.90212 0.93395 0.93537 0.95094 0.94845 0.90090 0.77622 0.88592 0.90742 0.89703 0.90756 0.90211 0.87300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.77 12.61 29.02 0.37 -1.40 16 2 C -0.16 -1.98 9.42 -36.02 -0.34 -2.32 16 3 C 0.13 1.92 5.66 -5.19 -0.03 1.89 16 4 N -0.47 -8.81 2.79 -115.37 -0.32 -9.14 16 5 C 0.42 8.96 6.20 -318.88 -1.98 6.98 16 6 N -0.46 -9.69 4.69 -175.88 -0.83 -10.51 16 7 C 0.19 4.49 4.56 -4.97 -0.02 4.47 16 8 C -0.54 -14.60 7.71 -34.44 -0.27 -14.87 16 9 H 0.06 1.80 6.32 -52.48 -0.33 1.47 16 10 C 0.07 1.97 5.45 -17.82 -0.10 1.87 16 11 N -0.89 -25.38 13.29 55.43 0.74 -24.64 16 12 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 13 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 14 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 15 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 16 C 0.07 1.39 4.84 -3.83 -0.02 1.38 16 17 C 0.07 1.17 6.23 37.15 0.23 1.40 16 18 O -0.36 -6.85 7.79 -35.23 -0.27 -7.12 16 19 C 0.03 0.45 11.01 101.05 1.11 1.57 16 20 N -0.34 -7.74 11.19 30.31 0.34 -7.40 16 21 N -0.27 -5.80 11.43 32.99 0.38 -5.42 16 22 C 0.13 2.46 7.07 -154.01 -1.09 1.37 16 23 C 0.20 2.95 1.35 -90.96 -0.12 2.83 16 24 O -0.54 -7.66 13.40 -35.23 -0.47 -8.13 16 25 C -0.16 -2.12 7.47 -25.83 -0.19 -2.31 16 26 C -0.13 -1.52 8.02 -25.83 -0.21 -1.73 16 27 C -0.10 -1.41 7.33 -25.92 -0.19 -1.60 16 28 H 0.11 0.89 8.06 -52.49 -0.42 0.46 16 29 H 0.10 0.81 7.10 -52.49 -0.37 0.44 16 30 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 31 H 0.09 1.12 6.77 -51.93 -0.35 0.77 16 32 H 0.12 2.05 5.74 -51.93 -0.30 1.75 16 33 H 0.08 1.94 5.59 -51.93 -0.29 1.65 16 34 H 0.03 0.69 5.65 -51.93 -0.29 0.40 16 35 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 36 H 0.08 1.82 5.86 -51.93 -0.30 1.51 16 37 H 0.08 1.47 7.66 -51.93 -0.40 1.07 16 38 H 0.05 0.69 8.14 -51.92 -0.42 0.26 16 39 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.37 4.65 3.45 45.56 0.16 4.81 16 44 H 0.10 1.44 8.09 -51.93 -0.42 1.02 16 45 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 47 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 49 H 0.11 1.57 7.65 -51.93 -0.40 1.17 16 LS Contribution 387.98 15.07 5.85 5.85 Total: -1.00 -32.37 387.98 -9.54 -41.92 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -7.08 Total: 8.05 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: -2.84 Total: -0.47 kcal Atomic # 7 Polarization: -57.41 SS G_CDS: 0.31 Total: -57.11 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: -0.75 Total: -15.25 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.37 -9.54 -41.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262934038.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.218 kcal (2) G-P(sol) polarization free energy of solvation -32.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds