Wall clock time and date at job start Tue Mar 31 2020 19:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50702 * 119.99763 * 2 1 4 4 N 1.46498 * 109.47446 * 124.99630 * 3 2 1 5 5 C 1.36459 * 127.13595 * 86.34965 * 4 3 2 6 6 N 1.38573 * 126.47263 * 359.97438 * 5 4 3 7 7 C 1.46901 * 110.99796 * 68.61056 * 6 5 4 8 8 C 1.50702 * 109.47276 * 66.85693 * 7 6 5 9 9 H 1.08003 * 119.99708 * 4.19430 * 8 7 6 10 10 C 1.37876 * 120.00227 * 184.18838 * 8 7 6 11 11 N 1.31513 * 119.99849 * 5.11310 * 10 8 7 12 12 Si 1.86801 * 120.00042 * 185.11595 * 10 8 7 13 13 H 1.48504 * 109.47007 * 65.00217 * 12 10 8 14 14 H 1.48500 * 109.46712 * 184.99738 * 12 10 8 15 15 H 1.48497 * 109.47125 * 304.99947 * 12 10 8 16 16 C 1.46901 * 110.99894 * 192.56153 * 6 5 4 17 17 C 1.52994 * 109.47075 * 162.76247 * 16 6 5 18 18 O 1.42897 * 109.47283 * 67.19403 * 17 16 6 19 19 C 1.42901 * 114.00132 * 184.70598 * 18 17 16 20 20 N 1.31218 * 107.05032 * 180.24617 * 5 4 3 21 21 N 1.28528 * 109.86133 * 359.55816 * 20 5 4 22 22 C 1.30296 * 110.05674 * 0.45445 * 21 20 5 23 23 C 1.50693 * 126.35086 * 179.76164 * 22 21 20 24 24 O 1.42903 * 112.85209 * 230.29292 * 23 22 21 25 25 C 1.53779 * 113.61334 * 99.09570 * 23 22 21 26 26 C 1.53960 * 87.01982 * 220.04721 * 25 23 22 27 27 C 1.53779 * 87.11017 * 25.36514 * 26 25 23 28 28 H 1.07998 * 119.99808 * 179.97438 * 1 2 3 29 29 H 1.08001 * 120.00291 * 0.02562 * 1 2 3 30 30 H 1.08001 * 120.00291 * 179.97438 * 2 1 3 31 31 H 1.08997 * 109.47595 * 4.99100 * 3 2 1 32 32 H 1.09004 * 109.47069 * 244.99602 * 3 2 1 33 33 H 1.08999 * 109.46895 * 186.85672 * 7 6 5 34 34 H 1.08990 * 109.47239 * 306.85552 * 7 6 5 35 35 H 0.96998 * 119.99802 * 179.97438 * 11 10 8 36 36 H 1.09003 * 109.47234 * 282.76119 * 16 6 5 37 37 H 1.09003 * 109.47180 * 42.75973 * 16 6 5 38 38 H 1.09007 * 109.47025 * 187.19395 * 17 16 6 39 39 H 1.09001 * 109.47483 * 307.19199 * 17 16 6 40 40 H 1.09003 * 109.47166 * 304.93507 * 19 18 17 41 41 H 1.09001 * 109.47085 * 64.93436 * 19 18 17 42 42 H 1.09003 * 109.47178 * 184.93652 * 19 18 17 43 43 H 0.96701 * 113.99559 * 309.67314 * 24 23 22 44 44 H 1.09000 * 113.61947 * 334.56637 * 25 23 22 45 45 H 1.09004 * 113.61605 * 105.47497 * 25 23 22 46 46 H 1.08996 * 113.54043 * 270.81496 * 26 25 23 47 47 H 1.09003 * 113.66680 * 139.93416 * 26 25 23 48 48 H 1.09004 * 113.61308 * 220.09129 * 27 26 25 49 49 H 1.08993 * 113.61965 * 89.18770 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9936 1.3321 1.1314 5 6 4.2658 0.8394 1.1640 6 7 4.9327 0.2112 0.1243 7 6 5.2314 1.1584 -0.9581 8 6 6.2337 2.1745 -0.4741 9 1 6.6620 2.0826 0.5130 10 6 6.6039 3.2212 -1.2916 11 7 6.0097 3.3908 -2.4525 12 14 7.9495 4.3983 -0.7502 13 1 9.2386 3.6670 -0.6561 14 1 8.0748 5.4966 -1.7419 15 1 7.6050 4.9671 0.5775 16 6 6.1572 -0.4435 0.6037 17 6 6.6308 -1.4624 -0.4347 18 8 7.0585 -0.7773 -1.6136 19 6 7.4226 -1.6441 -2.6898 20 7 4.7361 1.0677 2.3675 21 7 3.8501 1.6729 3.0751 22 6 2.7673 1.8565 2.3739 23 6 1.5009 2.5239 2.8445 24 8 0.3316 1.7473 2.5762 25 6 1.3789 3.9927 2.4058 26 6 0.8049 4.2792 3.8054 27 6 1.5781 3.0416 4.2905 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5401 0.9353 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3585 2.1317 0.0894 32 1 2.6213 1.4026 -0.9314 33 1 5.6441 0.6182 -1.8100 34 1 4.3154 1.6666 -1.2592 35 1 6.2699 4.1274 -3.0274 36 1 6.9335 0.3060 0.7578 37 1 5.9520 -0.9529 1.5453 38 1 7.4622 -2.0373 -0.0267 39 1 5.8107 -2.1359 -0.6833 40 1 8.1836 -2.3463 -2.3492 41 1 6.5441 -2.1950 -3.0257 42 1 7.8179 -1.0521 -3.5153 43 1 0.2659 1.4384 1.6622 44 1 2.3390 4.4743 2.2206 45 1 0.6629 4.1494 1.5989 46 1 -0.2778 4.1680 3.8630 47 1 1.1592 5.2137 4.2406 48 1 1.0228 2.4315 5.0030 49 1 2.5927 3.2626 4.6216 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262934038.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:48 Heat of formation + Delta-G solvation = 33.717286 kcal Electronic energy + Delta-G solvation = -31477.346911 eV Core-core repulsion = 27442.762452 eV Total energy + Delta-G solvation = -4034.584459 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.99581 -40.48154 -39.42809 -37.77666 -37.29062 -35.63785 -34.65116 -33.78184 -31.52139 -30.58834 -28.67160 -27.69417 -27.00170 -26.79445 -26.23598 -24.60270 -23.62715 -22.23298 -21.67051 -21.18882 -20.49848 -18.92165 -18.59770 -17.72510 -17.53896 -17.43458 -17.05426 -16.76358 -16.52024 -16.15724 -15.96804 -15.79864 -15.61001 -15.12002 -14.81628 -14.62092 -14.52495 -13.71240 -13.68972 -13.45785 -13.39841 -13.25763 -12.98508 -12.78024 -12.72935 -12.56297 -12.54921 -12.45400 -12.27925 -12.17849 -12.02367 -11.86139 -11.73773 -11.52669 -11.46041 -11.15170 -11.00442 -10.67782 -10.58675 -10.39421 -10.27479 -9.15041 -8.20318 -6.28577 0.79414 0.89540 1.31020 1.31698 1.39891 1.59914 1.85011 2.35718 2.86125 2.96094 3.04712 3.10302 3.15363 3.40977 3.48188 3.64142 3.71250 3.80051 4.09341 4.11644 4.23377 4.28712 4.38787 4.43856 4.48880 4.53284 4.60909 4.65626 4.69780 4.75006 4.76206 4.90821 4.92610 4.96355 5.03115 5.05972 5.09477 5.11306 5.19424 5.41213 5.44497 5.47935 5.51901 5.68919 5.75814 5.82724 6.10833 6.31527 6.41452 6.51444 6.80718 7.37140 7.80849 8.85145 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.010694 B = 0.004776 C = 0.003969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2617.679260 B = 5861.256538 C = 7052.115689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.190 4.190 3 C 0.125 3.875 4 N -0.468 5.468 5 C 0.395 3.605 6 N -0.451 5.451 7 C 0.207 3.793 8 C -0.540 4.540 9 H 0.042 0.958 10 C 0.028 3.972 11 N -0.915 5.915 12 Si 0.938 3.062 13 H -0.272 1.272 14 H -0.276 1.276 15 H -0.287 1.287 16 C 0.073 3.927 17 C 0.076 3.924 18 O -0.398 6.398 19 C 0.028 3.972 20 N -0.367 5.367 21 N -0.304 5.304 22 C 0.143 3.857 23 C 0.188 3.812 24 O -0.532 6.532 25 C -0.158 4.158 26 C -0.114 4.114 27 C -0.109 4.109 28 H 0.132 0.868 29 H 0.123 0.877 30 H 0.109 0.891 31 H 0.111 0.889 32 H 0.096 0.904 33 H 0.066 0.934 34 H 0.012 0.988 35 H 0.264 0.736 36 H 0.045 0.955 37 H 0.087 0.913 38 H 0.076 0.924 39 H 0.063 0.937 40 H 0.055 0.945 41 H 0.047 0.953 42 H 0.076 0.924 43 H 0.379 0.621 44 H 0.073 0.927 45 H 0.094 0.906 46 H 0.105 0.895 47 H 0.089 0.911 48 H 0.088 0.912 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.667 -6.224 3.407 14.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.209 4.209 3 C 0.003 3.997 4 N -0.162 5.162 5 C 0.038 3.962 6 N -0.174 5.174 7 C 0.083 3.917 8 C -0.579 4.579 9 H 0.060 0.940 10 C -0.172 4.172 11 N -0.554 5.554 12 Si 0.765 3.235 13 H -0.197 1.197 14 H -0.201 1.201 15 H -0.213 1.213 16 C -0.055 4.055 17 C -0.001 4.001 18 O -0.318 6.318 19 C -0.068 4.068 20 N -0.212 5.212 21 N -0.144 5.144 22 C -0.126 4.126 23 C 0.143 3.857 24 O -0.341 6.341 25 C -0.197 4.197 26 C -0.151 4.151 27 C -0.147 4.147 28 H 0.150 0.850 29 H 0.141 0.859 30 H 0.127 0.873 31 H 0.129 0.871 32 H 0.114 0.886 33 H 0.083 0.917 34 H 0.030 0.970 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.106 0.894 38 H 0.094 0.906 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.095 0.905 43 H 0.232 0.768 44 H 0.092 0.908 45 H 0.113 0.887 46 H 0.124 0.876 47 H 0.108 0.892 48 H 0.107 0.893 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -12.120 -6.161 4.768 14.408 hybrid contribution 1.130 0.750 -1.575 2.078 sum -10.990 -5.411 3.193 12.659 Atomic orbital electron populations 1.24251 0.94157 1.04686 0.95227 1.22978 0.96945 0.96876 1.04137 1.21285 0.91765 0.98685 0.87934 1.46218 1.11919 1.45659 1.12440 1.22869 0.84482 0.95283 0.93583 1.59481 1.23722 1.28381 1.05839 1.19863 0.94572 0.88496 0.88815 1.21684 1.25445 1.10287 1.00480 0.93977 1.25407 0.97990 0.98663 0.95122 1.69981 1.42325 1.31949 1.11188 0.85924 0.80931 0.79111 0.77558 1.19724 1.20053 1.21280 1.22030 0.89704 0.96721 0.97001 1.22504 0.98611 0.93419 0.85538 1.88217 1.86186 1.33895 1.23461 1.22805 0.99411 0.94696 0.89913 1.74510 1.22988 1.20292 1.03389 1.73654 0.98881 1.15154 1.26710 1.25706 1.00635 1.03607 0.82661 1.20742 0.76888 0.88331 0.99697 1.86556 1.40039 1.72061 1.35436 1.23683 1.02227 0.93247 1.00552 1.22777 1.00917 0.97893 0.93476 1.22975 1.02320 0.97199 0.92187 0.85029 0.85898 0.87291 0.87052 0.88630 0.91671 0.96966 0.92712 0.93708 0.89447 0.90596 0.91872 0.92606 0.93427 0.90500 0.76837 0.90832 0.88713 0.87650 0.89226 0.89319 0.88893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 12.61 67.78 0.85 -1.45 16 2 C -0.19 -4.52 9.42 25.65 0.24 -4.28 16 3 C 0.12 3.74 5.66 85.63 0.48 4.23 16 4 N -0.47 -17.88 2.79 -518.92 -1.45 -19.33 16 5 C 0.40 17.64 6.20 260.11 1.61 19.25 16 6 N -0.45 -19.59 4.69 -710.37 -3.33 -22.92 16 7 C 0.21 10.39 4.56 85.56 0.39 10.78 16 8 C -0.54 -30.45 7.71 25.60 0.20 -30.25 16 9 H 0.04 2.53 6.32 -2.91 -0.02 2.51 16 10 C 0.03 1.60 5.45 84.65 0.46 2.06 16 11 N -0.91 -52.82 13.29 21.45 0.29 -52.54 16 12 Si 0.94 46.10 29.54 68.60 2.03 48.13 16 13 H -0.27 -13.13 7.11 99.48 0.71 -12.42 16 14 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 15 H -0.29 -14.41 7.11 99.48 0.71 -13.70 16 16 C 0.07 2.96 4.84 86.30 0.42 3.38 16 17 C 0.08 2.52 6.23 71.98 0.45 2.97 16 18 O -0.40 -15.44 7.79 -148.98 -1.16 -16.60 16 19 C 0.03 0.79 11.01 113.37 1.25 2.04 16 20 N -0.37 -17.62 11.19 -58.01 -0.65 -18.27 16 21 N -0.30 -13.56 11.43 -49.54 -0.57 -14.12 16 22 C 0.14 5.43 7.07 137.64 0.97 6.40 16 23 C 0.19 5.40 1.35 -11.01 -0.01 5.39 16 24 O -0.53 -13.63 13.40 -148.98 -2.00 -15.63 16 25 C -0.16 -3.93 7.47 31.18 0.23 -3.70 16 26 C -0.11 -2.25 8.02 31.18 0.25 -2.00 16 27 C -0.11 -2.79 7.33 31.12 0.23 -2.56 16 28 H 0.13 1.58 8.06 -2.91 -0.02 1.55 16 29 H 0.12 1.42 7.10 -2.91 -0.02 1.40 16 30 H 0.11 2.89 8.06 -2.91 -0.02 2.87 16 31 H 0.11 2.69 6.77 -2.39 -0.02 2.67 16 32 H 0.10 3.36 5.74 -2.39 -0.01 3.35 16 33 H 0.07 3.45 5.59 -2.39 -0.01 3.44 16 34 H 0.01 0.66 5.65 -2.39 -0.01 0.64 16 35 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 36 H 0.04 2.13 5.86 -2.39 -0.01 2.12 16 37 H 0.09 3.35 7.66 -2.39 -0.02 3.33 16 38 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 39 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 43 H 0.38 8.26 3.45 -74.06 -0.26 8.01 16 44 H 0.07 2.18 8.09 -2.39 -0.02 2.16 16 45 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 46 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 47 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 48 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 49 H 0.09 2.69 7.65 -2.39 -0.02 2.67 16 Total: -1.00 -73.03 387.98 1.89 -71.14 By element: Atomic # 1 Polarization: 27.19 SS G_CDS: 0.71 Total: 27.90 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: 8.03 Total: 12.25 kcal Atomic # 7 Polarization: -121.47 SS G_CDS: -5.71 Total: -127.19 kcal Atomic # 8 Polarization: -29.07 SS G_CDS: -3.16 Total: -32.23 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -73.03 1.89 -71.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262934038.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.855 kcal (2) G-P(sol) polarization free energy of solvation -73.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds