Wall clock time and date at job start Tue Mar 31 2020 19:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50709 * 120.00219 * 2 1 4 4 N 1.46498 * 109.47036 * 126.09275 * 3 2 1 5 5 C 1.36740 * 127.13506 * 84.96590 * 4 3 2 6 6 C 1.50694 * 126.34932 * 359.76359 * 5 4 3 7 7 C 1.53780 * 113.61995 * 219.14008 * 6 5 4 8 8 C 1.53953 * 87.02051 * 220.04918 * 7 6 5 9 9 O 1.42898 * 113.66330 * 139.92912 * 8 7 6 10 10 C 1.53777 * 113.61301 * 121.53095 * 6 5 4 11 11 N 1.30293 * 107.30502 * 179.73433 * 5 4 3 12 12 N 1.28531 * 110.05498 * 359.97438 * 11 5 4 13 13 C 1.31225 * 109.85836 * 359.97438 * 12 11 5 14 14 N 1.38576 * 126.46942 * 179.97438 * 13 12 11 15 15 C 1.46903 * 110.99764 * 257.86919 * 14 13 12 16 16 C 1.50691 * 109.47316 * 65.29604 * 15 14 13 17 17 H 1.08003 * 119.99922 * 2.99915 * 16 15 14 18 18 C 1.37875 * 120.00191 * 183.01046 * 16 15 14 19 19 N 1.31512 * 119.99851 * 4.93935 * 18 16 15 20 20 Si 1.86801 * 120.00254 * 184.94124 * 18 16 15 21 21 H 1.48501 * 109.46997 * 4.99967 * 20 18 16 22 22 H 1.48494 * 109.47351 * 125.00490 * 20 18 16 23 23 H 1.48503 * 109.47170 * 245.00583 * 20 18 16 24 24 C 1.46899 * 111.00372 * 21.82402 * 14 13 12 25 25 C 1.53002 * 109.47161 * 162.94986 * 24 14 13 26 26 O 1.42902 * 109.47017 * 67.19456 * 25 24 14 27 27 C 1.42900 * 114.00219 * 184.75507 * 26 25 24 28 28 H 1.08005 * 119.99937 * 180.02562 * 1 2 3 29 29 H 1.08005 * 119.99901 * 359.97438 * 1 2 3 30 30 H 1.08001 * 120.00128 * 180.02562 * 2 1 3 31 31 H 1.09006 * 109.46543 * 6.09404 * 3 2 1 32 32 H 1.08991 * 109.46945 * 246.09793 * 3 2 1 33 33 H 1.09005 * 112.84816 * 350.34388 * 6 5 4 34 34 H 1.08995 * 113.61103 * 334.57089 * 7 6 5 35 35 H 1.08999 * 113.61147 * 105.46604 * 7 6 5 36 36 H 1.09002 * 113.53613 * 270.80974 * 8 7 6 37 37 H 0.96707 * 113.99971 * 82.44066 * 9 8 7 38 38 H 1.09007 * 113.61705 * 254.53435 * 10 6 5 39 39 H 1.08998 * 113.61648 * 25.44033 * 10 6 5 40 40 H 1.09005 * 109.46985 * 185.29582 * 15 14 13 41 41 H 1.09000 * 109.47164 * 305.28975 * 15 14 13 42 42 H 0.97006 * 119.99945 * 180.02562 * 19 18 16 43 43 H 1.09004 * 109.47103 * 282.95165 * 24 14 13 44 44 H 1.08997 * 109.46995 * 42.95042 * 24 14 13 45 45 H 1.08997 * 109.47196 * 187.19769 * 25 24 14 46 46 H 1.08997 * 109.46948 * 307.19799 * 25 24 14 47 47 H 1.08992 * 109.47391 * 184.91763 * 27 26 25 48 48 H 1.09004 * 109.47089 * 304.91428 * 27 26 25 49 49 H 1.09001 * 109.46933 * 64.90960 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 3.0124 1.3212 1.1161 5 6 4.2781 0.8039 1.1311 6 6 4.9677 0.0974 -0.0074 7 6 5.8164 -1.1054 0.4376 8 6 6.8605 -0.6494 -0.5977 9 8 8.2098 -0.7698 -0.1429 10 6 6.2821 0.7669 -0.4420 11 7 4.7775 1.0358 2.3119 12 7 3.9203 1.6599 3.0383 13 6 2.8191 1.8619 2.3539 14 7 1.6752 2.5017 2.8039 15 6 0.6309 1.5293 3.1530 16 6 1.0857 0.7042 4.3291 17 1 2.0325 0.9160 4.8035 18 6 0.2931 -0.3213 4.7994 19 7 -0.8122 -0.6427 4.1635 20 14 0.7894 -1.2541 6.3399 21 1 1.9982 -0.6260 6.9311 22 1 -0.3220 -1.2119 7.3238 23 1 1.0867 -2.6662 5.9893 24 6 1.9768 3.3813 3.9412 25 6 0.8272 4.3714 4.1390 26 8 -0.3410 3.6663 4.5633 27 6 -1.5064 4.4859 4.6745 28 1 -0.5400 -0.9354 0.0004 29 1 -0.5400 0.9354 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3602 2.1307 0.1091 32 1 2.6058 1.4116 -0.9395 33 1 4.2960 -0.1250 -0.8365 34 1 6.1645 -1.0366 1.4682 35 1 5.3628 -2.0692 0.2064 36 1 6.7069 -1.0773 -1.5884 37 1 8.5792 -1.6585 -0.2382 38 1 6.2040 1.3126 -1.3825 39 1 6.7579 1.3485 0.3476 40 1 -0.2859 2.0584 3.4131 41 1 0.4438 0.8755 2.3011 42 1 -1.3700 -1.3640 4.4947 43 1 2.0984 2.7808 4.8427 44 1 2.8979 3.9291 3.7425 45 1 1.1049 5.1038 4.8970 46 1 0.6217 4.8822 3.1983 47 1 -2.3270 3.8970 5.0841 48 1 -1.2973 5.3269 5.3357 49 1 -1.7835 4.8590 3.6886 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262960177.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:53 Heat of formation + Delta-G solvation = 47.946186 kcal Electronic energy + Delta-G solvation = -30976.482437 eV Core-core repulsion = 26942.514989 eV Total energy + Delta-G solvation = -4033.967448 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.28700 -39.15652 -37.86358 -36.11981 -35.69016 -35.00484 -32.45501 -32.19465 -29.89238 -28.74422 -26.74069 -26.25820 -25.74824 -25.48522 -24.89525 -22.74478 -21.96289 -20.88250 -20.02052 -19.53994 -18.89324 -17.75087 -16.92094 -16.32774 -15.98465 -15.80028 -15.52675 -15.41590 -15.07275 -14.85262 -14.40435 -14.25639 -14.11200 -13.68912 -13.42263 -13.09087 -12.66461 -12.40289 -12.29944 -12.10959 -11.90585 -11.66055 -11.56124 -11.23377 -11.19663 -11.13567 -11.03682 -10.87656 -10.82407 -10.67907 -10.52094 -10.29458 -9.95398 -9.87503 -9.85262 -9.53899 -9.44425 -9.10128 -9.03110 -8.48767 -8.26662 -7.36264 -5.95988 -3.96527 2.25291 2.54594 3.11703 3.34983 3.42377 3.51498 3.61009 4.10925 4.38726 4.47677 4.53038 4.58716 4.70701 4.78911 4.83032 4.91457 5.02223 5.14680 5.24833 5.32069 5.40314 5.55201 5.64999 5.69389 5.74339 5.77586 5.78108 5.83437 5.90457 5.94020 6.01270 6.04946 6.09178 6.14674 6.17833 6.31786 6.54342 6.68176 6.79855 6.82541 6.94787 7.14444 7.43609 7.57893 7.66267 7.71781 7.79261 8.01520 8.28310 8.31961 9.08411 9.55350 9.66980 11.11798 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.011191 B = 0.004102 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.434675 B = 6825.006346 C = 7402.684951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.191 4.191 3 C 0.148 3.852 4 N -0.471 5.471 5 C 0.162 3.838 6 C -0.019 4.019 7 C -0.150 4.150 8 C 0.077 3.923 9 O -0.556 6.556 10 C -0.112 4.112 11 N -0.282 5.282 12 N -0.331 5.331 13 C 0.408 3.592 14 N -0.468 5.468 15 C 0.181 3.819 16 C -0.531 4.531 17 H 0.065 0.935 18 C 0.070 3.930 19 N -0.893 5.893 20 Si 0.884 3.116 21 H -0.272 1.272 22 H -0.285 1.285 23 H -0.288 1.288 24 C 0.073 3.927 25 C 0.070 3.930 26 O -0.355 6.355 27 C 0.031 3.969 28 H 0.102 0.898 29 H 0.099 0.901 30 H 0.108 0.892 31 H 0.101 0.899 32 H 0.089 0.911 33 H 0.103 0.897 34 H 0.105 0.895 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.376 0.624 38 H 0.074 0.926 39 H 0.100 0.900 40 H 0.073 0.927 41 H 0.040 0.960 42 H 0.257 0.743 43 H 0.079 0.921 44 H 0.074 0.926 45 H 0.047 0.953 46 H 0.046 0.954 47 H 0.080 0.920 48 H 0.030 0.970 49 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.235 4.272 -12.941 14.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.210 4.210 3 C 0.025 3.975 4 N -0.165 5.165 5 C -0.106 4.106 6 C -0.040 4.040 7 C -0.189 4.189 8 C 0.018 3.982 9 O -0.361 6.361 10 C -0.150 4.150 11 N -0.122 5.122 12 N -0.174 5.174 13 C 0.052 3.948 14 N -0.193 5.193 15 C 0.058 3.942 16 C -0.570 4.570 17 H 0.083 0.917 18 C -0.132 4.132 19 N -0.533 5.533 20 Si 0.712 3.288 21 H -0.196 1.196 22 H -0.211 1.211 23 H -0.214 1.214 24 C -0.055 4.055 25 C -0.007 4.007 26 O -0.273 6.273 27 C -0.066 4.066 28 H 0.121 0.879 29 H 0.118 0.882 30 H 0.126 0.874 31 H 0.119 0.881 32 H 0.107 0.893 33 H 0.121 0.879 34 H 0.124 0.876 35 H 0.089 0.911 36 H 0.099 0.901 37 H 0.222 0.778 38 H 0.093 0.907 39 H 0.119 0.881 40 H 0.090 0.910 41 H 0.058 0.942 42 H 0.067 0.933 43 H 0.098 0.902 44 H 0.093 0.907 45 H 0.065 0.935 46 H 0.064 0.936 47 H 0.099 0.901 48 H 0.049 0.951 49 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 5.757 4.944 -11.970 14.172 hybrid contribution -0.805 -1.525 0.336 1.756 sum 4.951 3.419 -11.634 13.098 Atomic orbital electron populations 1.23831 0.95432 1.02387 0.95324 1.22879 0.96402 0.97413 1.04319 1.20780 0.91342 0.97915 0.87505 1.46049 1.12957 1.45478 1.12049 1.23951 0.83853 1.04582 0.98179 1.20491 0.94283 0.96130 0.93089 1.23743 0.96200 0.96865 1.02067 1.23319 0.81207 0.97706 0.95970 1.86562 1.27641 1.35249 1.86686 1.23114 0.93665 0.95836 1.02424 1.73767 1.24605 1.13720 1.00069 1.74669 1.00782 1.18982 1.23013 1.22626 0.94662 0.94941 0.82533 1.59486 1.04228 1.20843 1.34750 1.20358 0.88821 0.88714 0.96294 1.21696 1.05128 1.15144 1.15063 0.91730 1.24773 0.94972 0.96704 0.96750 1.69946 1.14069 1.30027 1.39243 0.86653 0.78526 0.79662 0.83933 1.19643 1.21097 1.21414 1.21964 0.95201 0.94141 0.94196 1.22490 0.86633 0.94067 0.97515 1.88318 1.17020 1.33690 1.88284 1.22653 0.89565 0.95221 0.99173 0.87935 0.88223 0.87353 0.88113 0.89279 0.87883 0.87648 0.91078 0.90095 0.77753 0.90743 0.88127 0.90959 0.94244 0.93307 0.90232 0.90734 0.93514 0.93603 0.90114 0.95139 0.94883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.00 12.94 29.02 0.38 -1.63 16 2 C -0.19 -2.92 9.10 -36.02 -0.33 -3.25 16 3 C 0.15 2.16 6.10 -5.19 -0.03 2.13 16 4 N -0.47 -8.76 2.79 -115.37 -0.32 -9.09 16 5 C 0.16 2.94 7.11 -154.02 -1.09 1.84 16 6 C -0.02 -0.25 4.04 -90.96 -0.37 -0.62 16 7 C -0.15 -1.88 7.47 -25.83 -0.19 -2.07 16 8 C 0.08 0.79 5.21 -25.83 -0.13 0.66 16 9 O -0.56 -6.17 13.67 -35.23 -0.48 -6.65 16 10 C -0.11 -1.32 7.46 -25.92 -0.19 -1.52 16 11 N -0.28 -6.15 11.83 32.99 0.39 -5.76 16 12 N -0.33 -7.83 11.21 30.31 0.34 -7.49 16 13 C 0.41 8.95 5.99 -318.87 -1.91 7.04 16 14 N -0.47 -10.06 4.66 -175.88 -0.82 -10.88 16 15 C 0.18 4.49 4.70 -4.98 -0.02 4.47 16 16 C -0.53 -14.90 7.66 -34.45 -0.26 -15.16 16 17 H 0.06 1.92 6.21 -52.48 -0.33 1.60 16 18 C 0.07 1.99 5.45 -17.82 -0.10 1.89 16 19 N -0.89 -25.88 13.29 55.43 0.74 -25.14 16 20 Si 0.88 22.74 29.54 -169.99 -5.02 17.71 16 21 H -0.27 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 23 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 24 C 0.07 1.46 4.83 -3.82 -0.02 1.44 16 25 C 0.07 1.20 6.23 37.16 0.23 1.43 16 26 O -0.36 -6.99 7.76 -35.23 -0.27 -7.27 16 27 C 0.03 0.46 11.01 101.05 1.11 1.58 16 28 H 0.10 1.53 8.06 -52.48 -0.42 1.10 16 29 H 0.10 1.45 7.85 -52.48 -0.41 1.03 16 30 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 31 H 0.10 1.48 7.76 -51.93 -0.40 1.08 16 32 H 0.09 0.99 7.74 -51.93 -0.40 0.59 16 33 H 0.10 1.10 7.54 -51.93 -0.39 0.70 16 34 H 0.11 1.63 7.81 -51.93 -0.41 1.22 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.38 2.40 9.12 45.56 0.42 2.82 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.10 1.45 8.09 -51.93 -0.42 1.03 16 40 H 0.07 1.90 5.49 -51.93 -0.28 1.61 16 41 H 0.04 1.01 5.60 -51.93 -0.29 0.72 16 42 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 43 H 0.08 1.86 6.00 -51.93 -0.31 1.55 16 44 H 0.07 1.40 7.83 -51.93 -0.41 0.99 16 45 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 46 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 47 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 48 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 49 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 397.99 15.07 6.00 6.00 Total: -1.00 -35.13 397.99 -9.39 -44.52 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -7.00 Total: 5.80 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: -2.94 Total: -1.76 kcal Atomic # 7 Polarization: -58.68 SS G_CDS: 0.32 Total: -58.36 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: -0.76 Total: -13.91 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.13 -9.39 -44.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262960177.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.470 kcal (2) G-P(sol) polarization free energy of solvation -35.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds