Wall clock time and date at job start Tue Mar 31 2020 19:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50709 * 120.00219 * 2 1 4 4 N 1.46498 * 109.47036 * 126.09275 * 3 2 1 5 5 C 1.36740 * 127.13506 * 84.96590 * 4 3 2 6 6 C 1.50694 * 126.34932 * 359.76359 * 5 4 3 7 7 C 1.53780 * 113.61995 * 219.14008 * 6 5 4 8 8 C 1.53953 * 87.02051 * 220.04918 * 7 6 5 9 9 O 1.42898 * 113.66330 * 139.92912 * 8 7 6 10 10 C 1.53777 * 113.61301 * 121.53095 * 6 5 4 11 11 N 1.30293 * 107.30502 * 179.73433 * 5 4 3 12 12 N 1.28531 * 110.05498 * 359.97438 * 11 5 4 13 13 C 1.31225 * 109.85836 * 359.97438 * 12 11 5 14 14 N 1.38576 * 126.46942 * 179.97438 * 13 12 11 15 15 C 1.46903 * 110.99764 * 257.86919 * 14 13 12 16 16 C 1.50691 * 109.47316 * 65.29604 * 15 14 13 17 17 H 1.08003 * 119.99922 * 2.99915 * 16 15 14 18 18 C 1.37875 * 120.00191 * 183.01046 * 16 15 14 19 19 N 1.31512 * 119.99851 * 4.93935 * 18 16 15 20 20 Si 1.86801 * 120.00254 * 184.94124 * 18 16 15 21 21 H 1.48501 * 109.46997 * 4.99967 * 20 18 16 22 22 H 1.48494 * 109.47351 * 125.00490 * 20 18 16 23 23 H 1.48503 * 109.47170 * 245.00583 * 20 18 16 24 24 C 1.46899 * 111.00372 * 21.82402 * 14 13 12 25 25 C 1.53002 * 109.47161 * 162.94986 * 24 14 13 26 26 O 1.42902 * 109.47017 * 67.19456 * 25 24 14 27 27 C 1.42900 * 114.00219 * 184.75507 * 26 25 24 28 28 H 1.08005 * 119.99937 * 180.02562 * 1 2 3 29 29 H 1.08005 * 119.99901 * 359.97438 * 1 2 3 30 30 H 1.08001 * 120.00128 * 180.02562 * 2 1 3 31 31 H 1.09006 * 109.46543 * 6.09404 * 3 2 1 32 32 H 1.08991 * 109.46945 * 246.09793 * 3 2 1 33 33 H 1.09005 * 112.84816 * 350.34388 * 6 5 4 34 34 H 1.08995 * 113.61103 * 334.57089 * 7 6 5 35 35 H 1.08999 * 113.61147 * 105.46604 * 7 6 5 36 36 H 1.09002 * 113.53613 * 270.80974 * 8 7 6 37 37 H 0.96707 * 113.99971 * 82.44066 * 9 8 7 38 38 H 1.09007 * 113.61705 * 254.53435 * 10 6 5 39 39 H 1.08998 * 113.61648 * 25.44033 * 10 6 5 40 40 H 1.09005 * 109.46985 * 185.29582 * 15 14 13 41 41 H 1.09000 * 109.47164 * 305.28975 * 15 14 13 42 42 H 0.97006 * 119.99945 * 180.02562 * 19 18 16 43 43 H 1.09004 * 109.47103 * 282.95165 * 24 14 13 44 44 H 1.08997 * 109.46995 * 42.95042 * 24 14 13 45 45 H 1.08997 * 109.47196 * 187.19769 * 25 24 14 46 46 H 1.08997 * 109.46948 * 307.19799 * 25 24 14 47 47 H 1.08992 * 109.47391 * 184.91763 * 27 26 25 48 48 H 1.09004 * 109.47089 * 304.91428 * 27 26 25 49 49 H 1.09001 * 109.46933 * 64.90960 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 3.0124 1.3212 1.1161 5 6 4.2781 0.8039 1.1311 6 6 4.9677 0.0974 -0.0074 7 6 5.8164 -1.1054 0.4376 8 6 6.8605 -0.6494 -0.5977 9 8 8.2098 -0.7698 -0.1429 10 6 6.2821 0.7669 -0.4420 11 7 4.7775 1.0358 2.3119 12 7 3.9203 1.6599 3.0383 13 6 2.8191 1.8619 2.3539 14 7 1.6752 2.5017 2.8039 15 6 0.6309 1.5293 3.1530 16 6 1.0857 0.7042 4.3291 17 1 2.0325 0.9160 4.8035 18 6 0.2931 -0.3213 4.7994 19 7 -0.8122 -0.6427 4.1635 20 14 0.7894 -1.2541 6.3399 21 1 1.9982 -0.6260 6.9311 22 1 -0.3220 -1.2119 7.3238 23 1 1.0867 -2.6662 5.9893 24 6 1.9768 3.3813 3.9412 25 6 0.8272 4.3714 4.1390 26 8 -0.3410 3.6663 4.5633 27 6 -1.5064 4.4859 4.6745 28 1 -0.5400 -0.9354 0.0004 29 1 -0.5400 0.9354 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3602 2.1307 0.1091 32 1 2.6058 1.4116 -0.9395 33 1 4.2960 -0.1250 -0.8365 34 1 6.1645 -1.0366 1.4682 35 1 5.3628 -2.0692 0.2064 36 1 6.7069 -1.0773 -1.5884 37 1 8.5792 -1.6585 -0.2382 38 1 6.2040 1.3126 -1.3825 39 1 6.7579 1.3485 0.3476 40 1 -0.2859 2.0584 3.4131 41 1 0.4438 0.8755 2.3011 42 1 -1.3700 -1.3640 4.4947 43 1 2.0984 2.7808 4.8427 44 1 2.8979 3.9291 3.7425 45 1 1.1049 5.1038 4.8970 46 1 0.6217 4.8822 3.1983 47 1 -2.3270 3.8970 5.0841 48 1 -1.2973 5.3269 5.3357 49 1 -1.7835 4.8590 3.6886 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262960177.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:52 Heat of formation + Delta-G solvation = 23.705358 kcal Electronic energy + Delta-G solvation = -30977.533598 eV Core-core repulsion = 26942.514989 eV Total energy + Delta-G solvation = -4035.018609 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.82113 -40.12978 -39.35790 -37.65116 -37.00608 -35.94018 -34.57164 -33.58026 -31.34710 -30.42221 -28.41275 -27.58022 -26.91910 -26.68777 -26.17767 -24.52847 -23.51597 -22.13049 -21.45282 -20.84168 -20.06207 -18.86353 -18.61283 -17.89313 -17.42466 -17.36388 -16.92517 -16.63531 -16.38067 -16.22758 -15.95312 -15.67739 -15.45209 -14.97565 -14.70849 -14.55843 -14.29745 -13.66185 -13.44016 -13.35866 -13.25329 -13.18647 -12.95661 -12.74458 -12.71204 -12.65434 -12.48753 -12.42678 -12.30441 -12.20344 -12.05698 -11.86307 -11.67251 -11.39913 -11.17507 -10.90078 -10.71024 -10.62975 -10.37923 -10.23382 -10.16219 -9.11292 -8.14245 -6.19279 0.85891 1.17256 1.27006 1.30084 1.42491 1.76588 2.00534 2.38802 3.04259 3.12412 3.18322 3.26419 3.51018 3.59725 3.77949 3.81027 3.94076 3.99207 4.01568 4.17483 4.19314 4.34006 4.36061 4.47567 4.51580 4.57056 4.62553 4.66126 4.70313 4.76514 4.86035 4.90843 4.94091 4.96209 5.02402 5.12142 5.14419 5.19322 5.35680 5.48735 5.57257 5.62551 5.73513 5.81657 5.86368 5.97667 6.20985 6.48850 6.59905 6.91269 7.00642 7.44689 7.96813 8.91327 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.011191 B = 0.004102 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.434675 B = 6825.006346 C = 7402.684951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.195 4.195 3 C 0.142 3.858 4 N -0.470 5.470 5 C 0.182 3.818 6 C -0.023 4.023 7 C -0.157 4.157 8 C 0.095 3.905 9 O -0.580 6.580 10 C -0.113 4.113 11 N -0.327 5.327 12 N -0.369 5.369 13 C 0.385 3.615 14 N -0.454 5.454 15 C 0.201 3.799 16 C -0.534 4.534 17 H 0.039 0.961 18 C 0.029 3.971 19 N -0.911 5.911 20 Si 0.930 3.070 21 H -0.285 1.285 22 H -0.272 1.272 23 H -0.284 1.284 24 C 0.075 3.925 25 C 0.077 3.923 26 O -0.398 6.398 27 C 0.028 3.972 28 H 0.102 0.898 29 H 0.104 0.896 30 H 0.108 0.892 31 H 0.100 0.900 32 H 0.135 0.865 33 H 0.141 0.859 34 H 0.065 0.935 35 H 0.088 0.912 36 H 0.125 0.875 37 H 0.396 0.604 38 H 0.105 0.895 39 H 0.065 0.935 40 H 0.061 0.939 41 H 0.032 0.968 42 H 0.260 0.740 43 H 0.039 0.961 44 H 0.083 0.917 45 H 0.074 0.926 46 H 0.065 0.935 47 H 0.075 0.925 48 H 0.055 0.945 49 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.297 4.327 -15.508 16.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.213 4.213 3 C 0.021 3.979 4 N -0.163 5.163 5 C -0.086 4.086 6 C -0.044 4.044 7 C -0.196 4.196 8 C 0.037 3.963 9 O -0.388 6.388 10 C -0.151 4.151 11 N -0.166 5.166 12 N -0.213 5.213 13 C 0.027 3.973 14 N -0.179 5.179 15 C 0.076 3.924 16 C -0.573 4.573 17 H 0.057 0.943 18 C -0.170 4.170 19 N -0.551 5.551 20 Si 0.758 3.242 21 H -0.211 1.211 22 H -0.198 1.198 23 H -0.211 1.211 24 C -0.053 4.053 25 C 0.000 4.000 26 O -0.317 6.317 27 C -0.068 4.068 28 H 0.120 0.880 29 H 0.122 0.878 30 H 0.126 0.874 31 H 0.118 0.882 32 H 0.152 0.848 33 H 0.158 0.842 34 H 0.084 0.916 35 H 0.107 0.893 36 H 0.143 0.857 37 H 0.246 0.754 38 H 0.123 0.877 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.050 0.950 42 H 0.069 0.931 43 H 0.057 0.943 44 H 0.101 0.899 45 H 0.092 0.908 46 H 0.083 0.917 47 H 0.094 0.906 48 H 0.073 0.927 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 5.824 4.993 -14.544 16.444 hybrid contribution -0.749 -1.557 1.116 2.057 sum 5.075 3.436 -13.428 14.760 Atomic orbital electron populations 1.23933 0.95680 1.02672 0.95293 1.22936 0.96445 0.97686 1.04280 1.21134 0.91320 0.97537 0.87901 1.46328 1.13584 1.44485 1.11888 1.24977 0.83398 1.02002 0.98241 1.20957 0.95045 0.96083 0.92280 1.23731 0.97451 0.97545 1.00858 1.23340 0.80185 0.96042 0.96778 1.86516 1.27991 1.37248 1.87037 1.23075 0.92567 0.96899 1.02576 1.73694 1.25370 1.15615 1.01930 1.74542 1.01945 1.20052 1.24725 1.22751 0.94441 0.96220 0.83868 1.59494 1.03696 1.19814 1.34851 1.19971 0.89288 0.88549 0.94551 1.21809 1.04019 1.15549 1.15925 0.94258 1.25310 0.95303 0.97602 0.98817 1.69992 1.14522 1.30542 1.40068 0.85946 0.77944 0.78580 0.81779 1.21070 1.19754 1.21051 1.21973 0.97296 0.94053 0.91998 1.22500 0.85034 0.93164 0.99330 1.88228 1.18692 1.36118 1.88706 1.22799 0.87901 0.95403 1.00711 0.87988 0.87761 0.87399 0.88164 0.84758 0.84151 0.91575 0.89332 0.85728 0.75419 0.87652 0.91621 0.92095 0.95023 0.93054 0.94275 0.89890 0.90826 0.91660 0.90605 0.92681 0.93304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.05 12.94 67.78 0.88 -3.17 16 2 C -0.19 -5.61 9.10 25.65 0.23 -5.38 16 3 C 0.14 3.85 6.10 85.64 0.52 4.37 16 4 N -0.47 -17.14 2.79 -518.91 -1.45 -18.58 16 5 C 0.18 6.55 7.11 137.64 0.98 7.53 16 6 C -0.02 -0.54 4.04 -11.02 -0.04 -0.59 16 7 C -0.16 -3.67 7.47 31.18 0.23 -3.43 16 8 C 0.10 1.65 5.21 31.18 0.16 1.82 16 9 O -0.58 -11.64 13.67 -148.98 -2.04 -13.67 16 10 C -0.11 -2.39 7.46 31.12 0.23 -2.16 16 11 N -0.33 -14.77 11.83 -49.54 -0.59 -15.35 16 12 N -0.37 -18.22 11.21 -58.00 -0.65 -18.87 16 13 C 0.38 17.17 5.99 260.11 1.56 18.73 16 14 N -0.45 -19.85 4.66 -710.36 -3.31 -23.16 16 15 C 0.20 10.14 4.70 85.55 0.40 10.54 16 16 C -0.53 -30.83 7.66 25.60 0.20 -30.63 16 17 H 0.04 2.45 6.21 -2.91 -0.02 2.43 16 18 C 0.03 1.69 5.45 84.65 0.46 2.16 16 19 N -0.91 -53.09 13.29 21.45 0.29 -52.81 16 20 Si 0.93 47.53 29.54 68.60 2.03 49.56 16 21 H -0.29 -15.08 7.11 99.48 0.71 -14.37 16 22 H -0.27 -13.27 7.11 99.48 0.71 -12.57 16 23 H -0.28 -14.28 7.11 99.48 0.71 -13.57 16 24 C 0.07 3.08 4.83 86.30 0.42 3.49 16 25 C 0.08 2.57 6.23 71.98 0.45 3.01 16 26 O -0.40 -15.63 7.76 -148.98 -1.16 -16.79 16 27 C 0.03 0.81 11.01 113.37 1.25 2.05 16 28 H 0.10 2.97 8.06 -2.91 -0.02 2.94 16 29 H 0.10 2.93 7.85 -2.91 -0.02 2.90 16 30 H 0.11 3.12 8.06 -2.91 -0.02 3.09 16 31 H 0.10 2.76 7.76 -2.38 -0.02 2.74 16 32 H 0.13 2.41 7.74 -2.39 -0.02 2.39 16 33 H 0.14 2.31 7.54 -2.38 -0.02 2.29 16 34 H 0.07 2.09 7.81 -2.39 -0.02 2.07 16 35 H 0.09 1.72 8.14 -2.39 -0.02 1.71 16 36 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.40 4.11 9.12 -74.05 -0.68 3.44 16 38 H 0.11 1.58 8.14 -2.38 -0.02 1.56 16 39 H 0.07 1.88 8.09 -2.39 -0.02 1.86 16 40 H 0.06 3.26 5.49 -2.38 -0.01 3.25 16 41 H 0.03 1.64 5.60 -2.39 -0.01 1.63 16 42 H 0.26 14.47 8.31 -92.70 -0.77 13.70 16 43 H 0.04 1.93 6.00 -2.38 -0.01 1.91 16 44 H 0.08 3.21 7.83 -2.39 -0.02 3.19 16 45 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 46 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 47 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 48 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 49 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -80.29 397.99 1.33 -78.96 By element: Atomic # 1 Polarization: 22.10 SS G_CDS: 0.28 Total: 22.38 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: 7.93 Total: 8.34 kcal Atomic # 7 Polarization: -123.06 SS G_CDS: -5.71 Total: -128.77 kcal Atomic # 8 Polarization: -27.27 SS G_CDS: -3.19 Total: -30.46 kcal Atomic # 14 Polarization: 47.53 SS G_CDS: 2.03 Total: 49.56 kcal Total: -80.29 1.33 -78.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262960177.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.666 kcal (2) G-P(sol) polarization free energy of solvation -80.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds