Wall clock time and date at job start Tue Mar 31 2020 19:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50696 * 120.00181 * 2 1 4 4 H 1.09000 * 109.47271 * 244.99908 * 3 2 1 5 5 O 1.42900 * 109.47279 * 5.00151 * 3 2 1 6 6 C 1.50707 * 109.47530 * 124.99850 * 3 2 1 7 7 N 1.30294 * 126.34367 * 285.15948 * 6 3 2 8 8 N 1.28528 * 110.04816 * 180.30761 * 7 6 3 9 9 C 1.31213 * 109.86410 * 359.71854 * 8 7 6 10 10 N 1.38578 * 126.47570 * 179.97438 * 9 8 7 11 11 C 1.46909 * 110.99808 * 256.44948 * 10 9 8 12 12 C 1.50694 * 109.47360 * 59.24522 * 11 10 9 13 13 H 1.08010 * 119.99707 * 3.61248 * 12 11 10 14 14 C 1.37870 * 120.00249 * 183.61736 * 12 11 10 15 15 N 1.31509 * 120.00028 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00134 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47501 * 89.99431 * 16 14 12 18 18 H 1.48498 * 109.47272 * 209.99695 * 16 14 12 19 19 H 1.48509 * 109.47067 * 329.99287 * 16 14 12 20 20 C 1.46895 * 111.00049 * 20.40141 * 10 9 8 21 21 C 1.53002 * 109.47122 * 164.01995 * 20 10 9 22 22 C 1.53008 * 117.49837 * 243.46058 * 21 20 10 23 23 C 1.52996 * 117.50057 * 174.80206 * 21 20 10 24 24 N 1.36458 * 107.05247 * 359.97438 * 9 8 7 25 25 C 1.46496 * 127.13892 * 180.02562 * 24 9 8 26 26 C 1.52994 * 109.47249 * 91.41526 * 25 24 9 27 27 O 1.42904 * 109.47610 * 180.02562 * 26 25 24 28 28 C 1.42897 * 114.00402 * 180.02562 * 27 26 25 29 29 H 1.08001 * 120.00385 * 0.02562 * 1 2 3 30 30 H 1.08006 * 120.00121 * 180.02562 * 1 2 3 31 31 H 1.08001 * 120.00385 * 179.97438 * 2 1 3 32 32 H 0.96703 * 114.00531 * 59.99445 * 5 3 2 33 33 H 1.09005 * 109.46931 * 179.24553 * 11 10 9 34 34 H 1.09002 * 109.46943 * 299.24509 * 11 10 9 35 35 H 0.97007 * 120.00206 * 180.02562 * 15 14 12 36 36 H 1.08997 * 109.47494 * 284.01623 * 20 10 9 37 37 H 1.08996 * 109.47321 * 44.02399 * 20 10 9 38 38 H 1.09001 * 115.54930 * 29.13030 * 21 20 10 39 39 H 1.09000 * 117.49746 * 359.97438 * 22 21 20 40 40 H 1.08994 * 117.49389 * 145.02138 * 22 21 20 41 41 H 1.09007 * 117.50214 * 214.98007 * 23 21 20 42 42 H 1.09001 * 117.49912 * 359.97438 * 23 21 20 43 43 H 1.09008 * 109.47265 * 331.41682 * 25 24 9 44 44 H 1.09000 * 109.47252 * 211.41602 * 25 24 9 45 45 H 1.09000 * 109.47449 * 299.99826 * 26 25 24 46 46 H 1.08997 * 109.47199 * 60.00164 * 26 25 24 47 47 H 1.08999 * 109.46927 * 179.97438 * 28 27 26 48 48 H 1.09002 * 109.46906 * 299.99820 * 28 27 26 49 49 H 1.09001 * 109.47180 * 59.99237 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3050 0.0000 4 1 2.6213 1.4025 -0.9314 5 8 1.1393 2.3887 0.1175 6 6 3.0204 1.3327 1.1639 7 7 2.7082 1.5115 2.4162 8 7 3.7680 1.4839 3.1428 9 6 4.8212 1.2785 2.3875 10 7 6.1363 1.1877 2.8148 11 6 6.8738 2.4223 2.5147 12 6 6.2061 3.5858 3.2013 13 1 5.3572 3.4168 3.8475 14 6 6.6786 4.8660 3.0045 15 7 7.7123 5.0717 2.2181 16 14 5.8513 6.3081 3.8561 17 1 6.4944 6.5398 5.1743 18 1 5.9907 7.5251 3.0166 19 1 4.4108 6.0060 4.0543 20 6 6.2036 0.8693 4.2473 21 6 7.6136 0.3891 4.5973 22 6 7.7662 -1.0485 5.0983 23 6 7.9234 0.1224 6.0716 24 7 4.3768 1.1712 1.1018 25 6 5.1858 0.9381 -0.0970 26 6 5.2831 -0.5656 -0.3622 27 8 6.0727 -0.7931 -1.5313 28 6 6.2265 -2.1729 -1.8695 29 1 -0.5401 0.9353 -0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8500 -0.9353 0.0004 32 1 0.6074 2.3663 0.9247 33 1 7.8992 2.3291 2.8725 34 1 6.8786 2.5900 1.4377 35 1 8.0450 5.9724 2.0799 36 1 5.9685 1.7605 4.8291 37 1 5.4844 0.0838 4.4791 38 1 8.4151 0.7947 3.9799 39 1 6.8621 -1.6521 5.1790 40 1 8.6684 -1.5885 4.8109 41 1 8.9289 0.3522 6.4242 42 1 7.1229 0.2894 6.7923 43 1 6.1853 1.3458 0.0541 44 1 4.7188 1.4282 -0.9514 45 1 5.7501 -1.0557 0.4921 46 1 4.2837 -0.9733 -0.5134 47 1 6.8376 -2.2609 -2.7677 48 1 6.7124 -2.6968 -1.0463 49 1 5.2464 -2.6136 -2.0524 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263262543.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:59 Heat of formation + Delta-G solvation = 27.032436 kcal Electronic energy + Delta-G solvation = -30743.206449 eV Core-core repulsion = 26708.332113 eV Total energy + Delta-G solvation = -4034.874336 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -44.00265 -39.55532 -39.08044 -38.79413 -37.13234 -36.15286 -34.66461 -33.73815 -31.29265 -30.88719 -29.39771 -27.70259 -27.22778 -27.09442 -24.99417 -24.22143 -23.17162 -22.53667 -21.73688 -20.99390 -20.74523 -18.88372 -18.59917 -17.85368 -17.73853 -17.41975 -17.08102 -16.91644 -16.72307 -16.50157 -16.14283 -15.91704 -15.67039 -15.25072 -14.82806 -14.70911 -14.45548 -13.99393 -13.74928 -13.50079 -13.38107 -13.19645 -13.08520 -12.78588 -12.68297 -12.51909 -12.41598 -12.36795 -12.29658 -12.28875 -12.05213 -12.02052 -11.64088 -11.44250 -11.22319 -11.10303 -10.88947 -10.75482 -10.67115 -10.47320 -10.34096 -9.25310 -8.28386 -6.41326 0.73410 1.05813 1.28240 1.30226 1.38601 1.41398 1.83912 2.31092 2.64054 2.91500 3.01712 3.09202 3.21787 3.37302 3.52879 3.79572 3.81746 3.90268 3.94380 4.06209 4.09693 4.13878 4.24646 4.33904 4.36250 4.41095 4.48429 4.54721 4.58598 4.64108 4.81311 4.85151 4.86742 4.96541 5.00204 5.03624 5.04638 5.09967 5.18446 5.31425 5.37796 5.53605 5.61090 5.65875 5.71867 5.79007 5.99306 6.05181 6.39182 6.48024 6.72555 7.28671 7.76552 8.76828 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.007718 B = 0.004908 C = 0.003941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3627.130308 B = 5703.118470 C = 7103.045017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.201 4.201 3 C 0.236 3.764 4 H 0.133 0.867 5 O -0.550 6.550 6 C 0.141 3.859 7 N -0.306 5.306 8 N -0.356 5.356 9 C 0.397 3.603 10 N -0.456 5.456 11 C 0.211 3.789 12 C -0.556 4.556 13 H 0.052 0.948 14 C 0.027 3.973 15 N -0.915 5.915 16 Si 0.944 3.056 17 H -0.267 1.267 18 H -0.277 1.277 19 H -0.285 1.285 20 C 0.118 3.882 21 C -0.160 4.160 22 C -0.158 4.158 23 C -0.171 4.171 24 N -0.464 5.464 25 C 0.109 3.891 26 C 0.068 3.932 27 O -0.404 6.404 28 C 0.027 3.973 29 H 0.110 0.890 30 H 0.124 0.876 31 H 0.125 0.875 32 H 0.393 0.607 33 H 0.038 0.962 34 H 0.016 0.984 35 H 0.267 0.733 36 H 0.037 0.963 37 H 0.068 0.932 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.108 0.892 41 H 0.105 0.895 42 H 0.094 0.906 43 H 0.089 0.911 44 H 0.116 0.884 45 H 0.051 0.949 46 H 0.072 0.928 47 H 0.104 0.896 48 H 0.046 0.954 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.247 -16.447 -6.565 18.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.220 4.220 3 C 0.174 3.826 4 H 0.150 0.850 5 O -0.356 6.356 6 C -0.128 4.128 7 N -0.146 5.146 8 N -0.200 5.200 9 C 0.040 3.960 10 N -0.179 5.179 11 C 0.087 3.913 12 C -0.595 4.595 13 H 0.070 0.930 14 C -0.173 4.173 15 N -0.554 5.554 16 Si 0.770 3.230 17 H -0.192 1.192 18 H -0.202 1.202 19 H -0.211 1.211 20 C -0.010 4.010 21 C -0.178 4.178 22 C -0.195 4.195 23 C -0.208 4.208 24 N -0.160 5.160 25 C -0.013 4.013 26 C -0.010 4.010 27 O -0.323 6.323 28 C -0.069 4.069 29 H 0.129 0.871 30 H 0.142 0.858 31 H 0.142 0.858 32 H 0.244 0.756 33 H 0.056 0.944 34 H 0.034 0.966 35 H 0.076 0.924 36 H 0.055 0.945 37 H 0.086 0.914 38 H 0.113 0.887 39 H 0.115 0.885 40 H 0.126 0.874 41 H 0.124 0.876 42 H 0.113 0.887 43 H 0.108 0.892 44 H 0.134 0.866 45 H 0.069 0.931 46 H 0.090 0.910 47 H 0.122 0.878 48 H 0.065 0.935 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.376 -16.137 -6.355 18.478 hybrid contribution 0.205 1.295 0.502 1.404 sum -6.171 -14.842 -5.853 17.106 Atomic orbital electron populations 1.24079 0.95262 1.03800 0.95679 1.23255 0.97225 0.96884 1.04601 1.19125 0.85681 0.86835 0.90993 0.84957 1.86549 1.53582 1.48294 1.47181 1.25955 0.82699 1.06054 0.98074 1.73645 1.21826 1.18756 1.00362 1.74555 0.95546 1.23265 1.26671 1.22620 0.93067 0.98111 0.82194 1.59301 1.03844 1.35448 1.19321 1.19587 0.93314 0.82698 0.95746 1.21878 1.15303 0.93143 1.29168 0.92953 1.25515 0.95313 1.00982 0.95537 1.69995 1.25067 1.22587 1.37749 0.85770 0.78539 0.79449 0.79265 1.19204 1.20185 1.21080 1.21341 0.95822 0.99163 0.84643 1.22068 0.96655 1.00714 0.98396 1.23072 1.03709 0.90083 1.02647 1.23019 1.03307 1.02853 0.91651 1.45980 1.07316 1.55024 1.07712 1.21685 0.96848 0.97837 0.84975 1.22503 0.96092 0.93748 0.88625 1.87795 1.72414 1.27725 1.44340 1.22998 1.02017 0.80337 1.01544 0.87147 0.85766 0.85763 0.75630 0.94380 0.96576 0.92394 0.94469 0.91363 0.88738 0.88549 0.87411 0.87648 0.88741 0.89217 0.86555 0.93070 0.90951 0.87761 0.93530 0.92362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 13.91 67.79 0.94 -1.54 16 2 C -0.20 -3.98 9.49 25.65 0.24 -3.73 16 3 C 0.24 6.03 3.93 29.10 0.11 6.14 16 4 H 0.13 2.96 6.98 -2.39 -0.02 2.94 16 5 O -0.55 -14.88 12.17 -148.98 -1.81 -16.70 16 6 C 0.14 4.93 6.91 137.64 0.95 5.88 16 7 N -0.31 -12.78 12.10 -49.53 -0.60 -13.38 16 8 N -0.36 -16.59 10.96 -58.01 -0.64 -17.22 16 9 C 0.40 17.25 5.80 260.11 1.51 18.76 16 10 N -0.46 -19.61 4.70 -710.36 -3.34 -22.95 16 11 C 0.21 10.67 4.90 85.55 0.42 11.08 16 12 C -0.56 -31.29 7.60 25.60 0.19 -31.09 16 13 H 0.05 3.12 6.25 -2.91 -0.02 3.10 16 14 C 0.03 1.55 5.46 84.65 0.46 2.01 16 15 N -0.91 -53.15 13.29 21.44 0.28 -52.87 16 16 Si 0.94 46.13 29.54 68.60 2.03 48.16 16 17 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 18 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 19 H -0.29 -14.48 7.11 99.48 0.71 -13.78 16 20 C 0.12 4.72 4.59 86.30 0.40 5.12 16 21 C -0.16 -5.38 5.69 -10.79 -0.06 -5.44 16 22 C -0.16 -4.03 10.18 30.62 0.31 -3.72 16 23 C -0.17 -4.67 10.25 30.62 0.31 -4.35 16 24 N -0.46 -16.99 2.81 -514.86 -1.45 -18.43 16 25 C 0.11 3.30 6.33 86.38 0.55 3.85 16 26 C 0.07 1.65 6.26 71.98 0.45 2.10 16 27 O -0.40 -9.56 10.70 -148.98 -1.59 -11.15 16 28 C 0.03 0.42 11.01 113.37 1.25 1.67 16 29 H 0.11 1.77 6.56 -2.91 -0.02 1.75 16 30 H 0.12 1.51 8.06 -2.91 -0.02 1.48 16 31 H 0.12 2.20 8.06 -2.91 -0.02 2.18 16 32 H 0.39 9.43 8.21 -74.06 -0.61 8.83 16 33 H 0.04 2.00 6.60 -2.38 -0.02 1.99 16 34 H 0.02 0.87 6.62 -2.39 -0.02 0.86 16 35 H 0.27 14.71 8.31 -92.70 -0.77 13.94 16 36 H 0.04 1.73 6.45 -2.39 -0.02 1.72 16 37 H 0.07 2.63 7.58 -2.39 -0.02 2.61 16 38 H 0.09 3.50 6.78 -2.39 -0.02 3.48 16 39 H 0.10 2.32 8.03 -2.39 -0.02 2.30 16 40 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 41 H 0.11 2.58 8.14 -2.38 -0.02 2.56 16 42 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 43 H 0.09 3.19 6.53 -2.38 -0.02 3.17 16 44 H 0.12 2.99 7.15 -2.39 -0.02 2.98 16 45 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 46 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 47 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 48 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 49 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -70.85 403.22 1.28 -69.57 By element: Atomic # 1 Polarization: 27.87 SS G_CDS: 0.35 Total: 28.23 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: 8.04 Total: 6.75 kcal Atomic # 7 Polarization: -119.12 SS G_CDS: -5.73 Total: -124.85 kcal Atomic # 8 Polarization: -24.44 SS G_CDS: -3.41 Total: -27.84 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Total: -70.85 1.28 -69.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263262543.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.603 kcal (2) G-P(sol) polarization free energy of solvation -70.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds