Wall clock time and date at job start Tue Mar 31 2020 21:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.52384 * 2 1 4 4 C 1.53069 * 109.39049 * 239.83273 * 2 1 3 5 5 C 1.53042 * 109.66070 * 301.27413 * 4 2 1 6 6 C 1.53197 * 109.31327 * 298.70724 * 5 4 2 7 7 N 1.46924 * 108.77515 * 54.62912 * 6 5 4 8 8 C 1.34773 * 120.62779 * 126.37284 * 7 6 5 9 9 O 1.21283 * 120.00408 * 185.44600 * 8 7 6 10 10 C 1.50705 * 120.00267 * 5.44739 * 8 7 6 11 11 N 1.46499 * 109.47107 * 180.02562 * 10 8 7 12 12 C 1.34601 * 126.43403 * 125.00280 * 11 10 8 13 13 N 1.31076 * 106.67721 * 179.97438 * 12 11 10 14 14 N 1.28842 * 107.99018 * 359.97438 * 13 12 11 15 15 N 1.28745 * 109.39674 * 359.73218 * 14 13 12 16 16 C 1.46922 * 118.74277 * 306.39273 * 7 6 5 17 17 H 1.09001 * 109.58844 * 293.68203 * 16 7 6 18 18 C 1.52998 * 109.58965 * 173.40050 * 16 7 6 19 19 C 1.53002 * 109.47298 * 180.02562 * 18 16 7 20 20 C 1.52994 * 109.47057 * 175.06961 * 19 18 16 21 21 N 1.46501 * 109.47332 * 180.02562 * 20 19 18 22 22 C 1.36937 * 120.00262 * 180.02562 * 21 20 19 23 23 H 1.07994 * 120.00021 * 0.02562 * 22 21 20 24 24 C 1.38817 * 119.99821 * 179.97438 * 22 21 20 25 25 N 1.31615 * 119.99994 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 119.99754 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47351 * 0.02562 * 26 24 22 28 28 H 1.48504 * 109.46999 * 120.00569 * 26 24 22 29 29 H 1.48497 * 109.47188 * 240.00472 * 26 24 22 30 30 H 1.09003 * 109.47245 * 299.92351 * 1 2 3 31 31 H 1.09004 * 109.46520 * 59.91777 * 1 2 3 32 32 H 1.08997 * 109.46942 * 179.91529 * 1 2 3 33 33 H 1.09001 * 109.34295 * 181.25125 * 4 2 1 34 34 H 1.08993 * 109.45363 * 61.36824 * 4 2 1 35 35 H 1.08998 * 109.50037 * 178.74762 * 5 4 2 36 36 H 1.09005 * 109.51744 * 58.67073 * 5 4 2 37 37 H 1.09002 * 109.57893 * 294.84407 * 6 5 4 38 38 H 1.08993 * 109.70134 * 174.48585 * 6 5 4 39 39 H 1.09000 * 109.47001 * 300.00044 * 10 8 7 40 40 H 1.08999 * 109.46748 * 59.99829 * 10 8 7 41 41 H 1.08001 * 126.66325 * 359.96004 * 12 11 10 42 42 H 1.08998 * 109.47205 * 60.04218 * 18 16 7 43 43 H 1.09002 * 109.47048 * 300.04438 * 18 16 7 44 44 H 1.08999 * 109.47268 * 295.06972 * 19 18 16 45 45 H 1.08997 * 109.46906 * 55.07086 * 19 18 16 46 46 H 1.08998 * 109.47563 * 300.00359 * 20 19 18 47 47 H 1.09005 * 109.47473 * 60.00336 * 20 19 18 48 48 H 0.97000 * 119.99454 * 359.97438 * 21 20 19 49 49 H 0.97000 * 119.99798 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0382 -0.7256 -1.2483 5 6 1.5035 -2.1594 -1.2640 6 6 2.0172 -2.9053 -0.0284 7 7 1.6544 -2.1390 1.1714 8 6 0.9791 -2.7230 2.1810 9 8 0.5990 -2.0578 3.1212 10 6 0.6961 -4.2027 2.1418 11 7 -0.0455 -4.5902 3.3443 12 6 -1.2275 -5.2330 3.3821 13 7 -1.5337 -5.3832 4.6477 14 7 -0.5889 -4.8604 5.3505 15 7 0.3149 -4.3856 4.5660 16 6 2.0412 -0.7238 1.2496 17 1 3.1272 -0.6440 1.2994 18 6 1.4228 -0.0911 2.4979 19 6 1.8268 1.3825 2.5764 20 6 1.1107 2.0456 3.7546 21 7 1.4970 3.4568 3.8294 22 6 0.9786 4.2575 4.8119 23 1 0.2853 3.8486 5.5319 24 6 1.3451 5.5945 4.8830 25 7 2.1905 6.0927 4.0058 26 14 0.6374 6.6869 6.2228 27 1 -0.2827 5.8919 7.0752 28 1 1.7417 7.2263 7.0564 29 1 -0.1089 7.8108 5.6024 30 1 -0.3634 0.5127 0.8907 31 1 -0.3632 0.5151 -0.8893 32 1 -0.3633 -1.0276 -0.0015 33 1 3.1280 -0.7446 -1.2363 34 1 1.6942 -0.1999 -2.1390 35 1 1.8486 -2.6667 -2.1649 36 1 0.4136 -2.1418 -1.2513 37 1 3.1013 -3.0034 -0.0855 38 1 1.5627 -3.8949 0.0188 39 1 0.1020 -4.4357 1.2581 40 1 1.6370 -4.7515 2.1021 41 1 -1.8105 -5.5611 2.5342 42 1 1.7806 -0.6134 3.3852 43 1 0.3369 -0.1680 2.4442 44 1 2.9050 1.4566 2.7182 45 1 1.5467 1.8858 1.6510 46 1 0.0325 1.9715 3.6128 47 1 1.3908 1.5424 4.6800 48 1 2.1206 3.8237 3.1833 49 1 2.4463 7.0270 4.0553 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264013146.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:40 Heat of formation + Delta-G solvation = 113.219493 kcal Electronic energy + Delta-G solvation = -30110.229169 eV Core-core repulsion = 26111.384935 eV Total energy + Delta-G solvation = -3998.844234 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -44.39504 -41.25177 -38.36550 -36.04743 -35.48779 -34.19626 -33.41294 -32.65392 -31.51744 -29.99436 -29.40482 -27.23675 -26.21611 -24.69397 -24.07972 -23.81806 -23.19433 -21.70421 -21.05171 -20.36893 -18.87933 -18.12397 -17.82279 -16.98549 -16.62955 -16.48267 -16.20201 -15.71793 -15.62164 -14.78815 -14.68736 -14.50764 -14.16197 -13.89437 -13.76411 -13.43034 -13.34893 -13.18003 -12.92805 -12.70299 -12.37843 -12.30527 -11.97693 -11.88821 -11.67243 -11.39299 -11.35995 -11.33058 -11.14927 -10.89073 -10.87852 -10.78175 -10.72403 -10.58324 -10.34585 -10.11296 -9.89901 -9.60647 -9.25649 -8.88565 -8.78273 -6.81836 -5.68727 -2.96102 0.97175 1.48853 2.03790 2.07493 2.45333 3.49194 3.54880 3.57624 3.58382 3.77650 3.88720 4.15006 4.20120 4.37938 4.46664 4.48877 4.62502 4.67129 4.80439 4.83059 5.02159 5.14394 5.22290 5.26927 5.37901 5.40781 5.42975 5.45753 5.56562 5.62300 5.63332 5.73729 5.76624 5.83706 5.86246 5.92904 6.12006 6.15971 6.22479 6.43917 6.45336 6.49150 6.74661 6.91454 7.04681 7.07127 7.68440 7.79996 8.39956 8.51204 9.61940 10.21639 10.56709 11.54706 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.010328 B = 0.002981 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2710.481622 B = 9389.685273 C =11654.303337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.106 4.106 3 H 0.092 0.908 4 C -0.116 4.116 5 C -0.137 4.137 6 C 0.103 3.897 7 N -0.600 5.600 8 C 0.498 3.502 9 O -0.487 6.487 10 C 0.093 3.907 11 N -0.301 5.301 12 C 0.157 3.843 13 N -0.306 5.306 14 N -0.077 5.077 15 N -0.059 5.059 16 C 0.156 3.844 17 H 0.076 0.924 18 C -0.105 4.105 19 C -0.132 4.132 20 C 0.157 3.843 21 N -0.735 5.735 22 C -0.233 4.233 23 H 0.070 0.930 24 C -0.018 4.018 25 N -0.936 5.936 26 Si 0.906 3.094 27 H -0.280 1.280 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.066 0.934 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.138 0.862 40 H 0.132 0.868 41 H 0.234 0.766 42 H 0.083 0.917 43 H 0.078 0.922 44 H 0.057 0.943 45 H 0.060 0.940 46 H 0.015 0.985 47 H 0.018 0.982 48 H 0.382 0.618 49 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.619 -27.612 -18.423 33.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.125 4.125 3 H 0.110 0.890 4 C -0.154 4.154 5 C -0.175 4.175 6 C -0.020 4.020 7 N -0.335 5.335 8 C 0.282 3.718 9 O -0.359 6.359 10 C -0.033 4.033 11 N -0.103 5.103 12 C -0.142 4.142 13 N -0.153 5.153 14 N -0.071 5.071 15 N -0.045 5.045 16 C 0.054 3.946 17 H 0.094 0.906 18 C -0.143 4.143 19 C -0.170 4.170 20 C 0.029 3.971 21 N -0.379 5.379 22 C -0.365 4.365 23 H 0.088 0.912 24 C -0.213 4.213 25 N -0.586 5.586 26 Si 0.737 3.263 27 H -0.205 1.205 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.156 0.844 40 H 0.150 0.850 41 H 0.250 0.750 42 H 0.101 0.899 43 H 0.096 0.904 44 H 0.076 0.924 45 H 0.079 0.921 46 H 0.033 0.967 47 H 0.036 0.964 48 H 0.215 0.785 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.725 -27.074 -16.340 31.631 hybrid contribution -0.151 0.740 -0.868 1.151 sum -0.875 -26.334 -17.208 31.470 Atomic orbital electron populations 1.21881 0.94712 1.01362 1.02394 1.21605 0.96929 1.00298 0.93717 0.88998 1.21571 1.00635 0.94983 0.98217 1.21962 1.01858 0.96681 0.97035 1.21838 1.01066 0.94393 0.84674 1.48055 1.56169 1.11984 1.17322 1.20089 0.79856 0.88317 0.83583 1.90992 1.49012 1.62308 1.33628 1.22132 0.99901 0.97097 0.84181 1.48185 1.16546 1.38234 1.07348 1.27706 0.88150 0.98786 0.99544 1.75002 1.20956 1.19020 1.00352 1.78720 0.96520 1.09567 1.22267 1.79061 1.22032 1.16556 0.86899 1.21488 0.98849 0.77690 0.96604 0.90624 1.22116 1.01862 0.94526 0.95833 1.21905 1.00541 0.94821 0.99761 1.20566 0.95924 0.85874 0.94697 1.42400 1.54713 1.04700 1.36049 1.19328 1.20312 0.91028 1.05822 0.91187 1.24728 1.00192 0.97084 0.99299 1.69673 1.37653 1.13681 1.37590 0.86114 0.78181 0.80674 0.81298 1.20528 1.21895 1.21928 0.91545 0.92857 0.93133 0.91659 0.91386 0.90588 0.90922 0.90562 0.90271 0.84391 0.84976 0.75025 0.89870 0.90375 0.92418 0.92107 0.96678 0.96449 0.78462 0.93703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 8.21 37.16 0.30 -1.12 16 2 C -0.11 -0.95 2.32 -90.48 -0.21 -1.16 16 3 H 0.09 0.96 6.66 -51.93 -0.35 0.61 16 4 C -0.12 -0.70 5.42 -26.67 -0.14 -0.84 16 5 C -0.14 -0.51 5.74 -26.61 -0.15 -0.66 16 6 C 0.10 0.32 6.33 -3.71 -0.02 0.30 16 7 N -0.60 -4.32 2.42 -165.22 -0.40 -4.72 16 8 C 0.50 4.40 7.63 -10.98 -0.08 4.32 16 9 O -0.49 -6.94 11.12 5.55 0.06 -6.88 16 10 C 0.09 0.40 5.37 -5.19 -0.03 0.38 16 11 N -0.30 -2.64 3.19 -63.73 -0.20 -2.84 16 12 C 0.16 1.18 12.79 -90.38 -1.16 0.03 16 13 N -0.31 -3.81 12.36 29.59 0.37 -3.45 16 14 N -0.08 -1.15 13.43 60.35 0.81 -0.34 16 15 N -0.06 -0.81 12.31 60.35 0.74 -0.06 16 16 C 0.16 1.55 2.71 -67.60 -0.18 1.37 16 17 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 18 C -0.11 -1.50 2.65 -26.73 -0.07 -1.57 16 19 C -0.13 -2.24 5.12 -26.73 -0.14 -2.38 16 20 C 0.16 3.51 6.26 -4.04 -0.03 3.48 16 21 N -0.73 -19.99 5.60 -59.91 -0.34 -20.33 16 22 C -0.23 -6.98 9.99 -15.06 -0.15 -7.13 16 23 H 0.07 2.06 7.83 -52.49 -0.41 1.65 16 24 C -0.02 -0.54 5.50 -17.43 -0.10 -0.63 16 25 N -0.94 -29.38 13.06 55.49 0.72 -28.65 16 26 Si 0.91 23.47 29.55 -169.99 -5.02 18.44 16 27 H -0.28 -7.08 7.11 56.52 0.40 -6.67 16 28 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 29 H -0.29 -7.53 7.11 56.52 0.40 -7.12 16 30 H 0.07 0.83 6.35 -51.93 -0.33 0.50 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.05 0.44 5.97 -51.93 -0.31 0.12 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 36 H 0.07 0.31 6.34 -51.93 -0.33 -0.02 16 37 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 38 H 0.08 -0.01 5.96 -51.93 -0.31 -0.32 16 39 H 0.14 -0.06 7.40 -51.93 -0.38 -0.44 16 40 H 0.13 0.24 8.12 -51.93 -0.42 -0.19 16 41 H 0.23 0.31 8.06 -52.49 -0.42 -0.11 16 42 H 0.08 1.37 6.45 -51.93 -0.34 1.04 16 43 H 0.08 1.23 5.22 -51.93 -0.27 0.96 16 44 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 45 H 0.06 1.00 6.33 -51.93 -0.33 0.67 16 46 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.38 10.70 7.67 -40.82 -0.31 10.39 16 49 H 0.25 7.62 8.31 -40.82 -0.34 7.29 16 LS Contribution 380.33 15.07 5.73 5.73 Total: -1.00 -40.07 380.33 -7.13 -47.21 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -7.45 Total: 1.53 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: -2.16 Total: -5.63 kcal Atomic # 7 Polarization: -62.10 SS G_CDS: 1.70 Total: -60.40 kcal Atomic # 8 Polarization: -6.94 SS G_CDS: 0.06 Total: -6.88 kcal Atomic # 14 Polarization: 23.47 SS G_CDS: -5.02 Total: 18.44 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -40.07 -7.13 -47.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264013146.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.425 kcal (2) G-P(sol) polarization free energy of solvation -40.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds