Wall clock time and date at job start Tue Mar 31 2020 21:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.52384 * 2 1 4 4 C 1.53069 * 109.39049 * 239.83273 * 2 1 3 5 5 C 1.53042 * 109.66070 * 301.27413 * 4 2 1 6 6 C 1.53197 * 109.31327 * 298.70724 * 5 4 2 7 7 N 1.46924 * 108.77515 * 54.62912 * 6 5 4 8 8 C 1.34773 * 120.62779 * 126.37284 * 7 6 5 9 9 O 1.21283 * 120.00408 * 185.44600 * 8 7 6 10 10 C 1.50705 * 120.00267 * 5.44739 * 8 7 6 11 11 N 1.46499 * 109.47107 * 180.02562 * 10 8 7 12 12 C 1.34601 * 126.43403 * 125.00280 * 11 10 8 13 13 N 1.31076 * 106.67721 * 179.97438 * 12 11 10 14 14 N 1.28842 * 107.99018 * 359.97438 * 13 12 11 15 15 N 1.28745 * 109.39674 * 359.73218 * 14 13 12 16 16 C 1.46922 * 118.74277 * 306.39273 * 7 6 5 17 17 H 1.09001 * 109.58844 * 293.68203 * 16 7 6 18 18 C 1.52998 * 109.58965 * 173.40050 * 16 7 6 19 19 C 1.53002 * 109.47298 * 180.02562 * 18 16 7 20 20 C 1.52994 * 109.47057 * 175.06961 * 19 18 16 21 21 N 1.46501 * 109.47332 * 180.02562 * 20 19 18 22 22 C 1.36937 * 120.00262 * 180.02562 * 21 20 19 23 23 H 1.07994 * 120.00021 * 0.02562 * 22 21 20 24 24 C 1.38817 * 119.99821 * 179.97438 * 22 21 20 25 25 N 1.31615 * 119.99994 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 119.99754 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47351 * 0.02562 * 26 24 22 28 28 H 1.48504 * 109.46999 * 120.00569 * 26 24 22 29 29 H 1.48497 * 109.47188 * 240.00472 * 26 24 22 30 30 H 1.09003 * 109.47245 * 299.92351 * 1 2 3 31 31 H 1.09004 * 109.46520 * 59.91777 * 1 2 3 32 32 H 1.08997 * 109.46942 * 179.91529 * 1 2 3 33 33 H 1.09001 * 109.34295 * 181.25125 * 4 2 1 34 34 H 1.08993 * 109.45363 * 61.36824 * 4 2 1 35 35 H 1.08998 * 109.50037 * 178.74762 * 5 4 2 36 36 H 1.09005 * 109.51744 * 58.67073 * 5 4 2 37 37 H 1.09002 * 109.57893 * 294.84407 * 6 5 4 38 38 H 1.08993 * 109.70134 * 174.48585 * 6 5 4 39 39 H 1.09000 * 109.47001 * 300.00044 * 10 8 7 40 40 H 1.08999 * 109.46748 * 59.99829 * 10 8 7 41 41 H 1.08001 * 126.66325 * 359.96004 * 12 11 10 42 42 H 1.08998 * 109.47205 * 60.04218 * 18 16 7 43 43 H 1.09002 * 109.47048 * 300.04438 * 18 16 7 44 44 H 1.08999 * 109.47268 * 295.06972 * 19 18 16 45 45 H 1.08997 * 109.46906 * 55.07086 * 19 18 16 46 46 H 1.08998 * 109.47563 * 300.00359 * 20 19 18 47 47 H 1.09005 * 109.47473 * 60.00336 * 20 19 18 48 48 H 0.97000 * 119.99454 * 359.97438 * 21 20 19 49 49 H 0.97000 * 119.99798 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0382 -0.7256 -1.2483 5 6 1.5035 -2.1594 -1.2640 6 6 2.0172 -2.9053 -0.0284 7 7 1.6544 -2.1390 1.1714 8 6 0.9791 -2.7230 2.1810 9 8 0.5990 -2.0578 3.1212 10 6 0.6961 -4.2027 2.1418 11 7 -0.0455 -4.5902 3.3443 12 6 -1.2275 -5.2330 3.3821 13 7 -1.5337 -5.3832 4.6477 14 7 -0.5889 -4.8604 5.3505 15 7 0.3149 -4.3856 4.5660 16 6 2.0412 -0.7238 1.2496 17 1 3.1272 -0.6440 1.2994 18 6 1.4228 -0.0911 2.4979 19 6 1.8268 1.3825 2.5764 20 6 1.1107 2.0456 3.7546 21 7 1.4970 3.4568 3.8294 22 6 0.9786 4.2575 4.8119 23 1 0.2853 3.8486 5.5319 24 6 1.3451 5.5945 4.8830 25 7 2.1905 6.0927 4.0058 26 14 0.6374 6.6869 6.2228 27 1 -0.2827 5.8919 7.0752 28 1 1.7417 7.2263 7.0564 29 1 -0.1089 7.8108 5.6024 30 1 -0.3634 0.5127 0.8907 31 1 -0.3632 0.5151 -0.8893 32 1 -0.3633 -1.0276 -0.0015 33 1 3.1280 -0.7446 -1.2363 34 1 1.6942 -0.1999 -2.1390 35 1 1.8486 -2.6667 -2.1649 36 1 0.4136 -2.1418 -1.2513 37 1 3.1013 -3.0034 -0.0855 38 1 1.5627 -3.8949 0.0188 39 1 0.1020 -4.4357 1.2581 40 1 1.6370 -4.7515 2.1021 41 1 -1.8105 -5.5611 2.5342 42 1 1.7806 -0.6134 3.3852 43 1 0.3369 -0.1680 2.4442 44 1 2.9050 1.4566 2.7182 45 1 1.5467 1.8858 1.6510 46 1 0.0325 1.9715 3.6128 47 1 1.3908 1.5424 4.6800 48 1 2.1206 3.8237 3.1833 49 1 2.4463 7.0270 4.0553 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264013146.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:39 Heat of formation + Delta-G solvation = 84.038560 kcal Electronic energy + Delta-G solvation = -30111.494549 eV Core-core repulsion = 26111.384935 eV Total energy + Delta-G solvation = -4000.109614 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -45.13534 -41.92500 -39.06330 -37.37312 -36.48505 -35.37653 -34.43062 -33.42369 -33.14714 -31.05147 -30.38723 -28.17165 -27.23344 -25.86099 -24.82523 -24.72797 -24.38502 -23.06296 -22.00533 -21.33498 -19.49719 -19.21472 -18.68232 -18.42072 -17.37569 -17.16152 -16.91467 -16.69873 -16.50125 -16.31569 -15.48432 -15.36364 -15.34289 -15.22425 -14.77002 -14.69829 -14.40081 -14.02733 -13.70261 -13.54917 -13.42141 -13.22564 -13.12490 -12.92714 -12.80254 -12.77543 -12.50980 -12.24886 -12.15244 -12.11579 -12.05152 -11.95618 -11.90744 -11.70947 -11.60738 -11.38902 -11.26671 -11.15345 -10.99117 -10.12679 -9.54478 -9.08849 -8.02250 -5.32233 0.30474 1.01483 1.28679 1.41849 1.43594 1.46166 1.54427 1.89722 2.50528 3.11728 3.30296 3.43480 3.50877 3.69663 3.78251 3.89883 3.96179 3.98774 4.02667 4.12661 4.16938 4.22637 4.27934 4.40366 4.50076 4.54347 4.63441 4.66432 4.70665 4.74551 4.80731 4.85517 4.90559 4.97282 5.01483 5.08356 5.17266 5.22365 5.25513 5.28320 5.34697 5.40527 5.42626 5.48459 5.56608 5.72513 6.20658 6.36387 7.08513 7.26274 7.61197 7.99702 8.27022 9.21511 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.010328 B = 0.002981 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2710.481622 B = 9389.685273 C =11654.303337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.104 4.104 3 H 0.069 0.931 4 C -0.114 4.114 5 C -0.133 4.133 6 C 0.095 3.905 7 N -0.594 5.594 8 C 0.488 3.512 9 O -0.554 6.554 10 C 0.092 3.908 11 N -0.297 5.297 12 C 0.183 3.817 13 N -0.350 5.350 14 N -0.124 5.124 15 N -0.096 5.096 16 C 0.161 3.839 17 H 0.078 0.922 18 C -0.085 4.085 19 C -0.117 4.117 20 C 0.158 3.842 21 N -0.745 5.745 22 C -0.255 4.255 23 H 0.067 0.933 24 C -0.072 4.072 25 N -0.967 5.967 26 Si 0.977 3.023 27 H -0.271 1.271 28 H -0.287 1.287 29 H -0.286 1.286 30 H 0.028 0.972 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.104 0.896 36 H 0.071 0.929 37 H 0.089 0.911 38 H 0.126 0.874 39 H 0.202 0.798 40 H 0.168 0.832 41 H 0.297 0.703 42 H 0.057 0.943 43 H 0.061 0.939 44 H 0.056 0.944 45 H 0.065 0.935 46 H 0.006 0.994 47 H 0.002 0.998 48 H 0.375 0.625 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.748 -30.285 -21.646 37.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.124 4.124 3 H 0.087 0.913 4 C -0.152 4.152 5 C -0.171 4.171 6 C -0.025 4.025 7 N -0.327 5.327 8 C 0.274 3.726 9 O -0.432 6.432 10 C -0.031 4.031 11 N -0.100 5.100 12 C -0.115 4.115 13 N -0.197 5.197 14 N -0.118 5.118 15 N -0.084 5.084 16 C 0.058 3.942 17 H 0.096 0.904 18 C -0.123 4.123 19 C -0.155 4.155 20 C 0.031 3.969 21 N -0.388 5.388 22 C -0.387 4.387 23 H 0.085 0.915 24 C -0.265 4.265 25 N -0.617 5.617 26 Si 0.805 3.195 27 H -0.196 1.196 28 H -0.214 1.214 29 H -0.212 1.212 30 H 0.047 0.953 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.122 0.878 36 H 0.090 0.910 37 H 0.107 0.893 38 H 0.144 0.856 39 H 0.219 0.781 40 H 0.185 0.815 41 H 0.312 0.688 42 H 0.075 0.925 43 H 0.079 0.921 44 H 0.074 0.926 45 H 0.084 0.916 46 H 0.024 0.976 47 H 0.020 0.980 48 H 0.208 0.792 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.837 -29.795 -19.614 35.681 hybrid contribution -0.111 1.570 0.012 1.574 sum -0.948 -28.225 -19.602 34.377 Atomic orbital electron populations 1.21823 0.95324 1.01905 1.00752 1.21548 0.96292 0.99542 0.94983 0.91312 1.21562 1.00993 0.96569 0.96049 1.21972 1.01738 0.94903 0.98468 1.22281 1.02471 0.95646 0.82133 1.48111 1.55264 1.10760 1.18584 1.20916 0.78773 0.90226 0.82652 1.90986 1.51802 1.64331 1.36079 1.22685 1.02649 0.93377 0.84352 1.48464 1.17055 1.37447 1.06994 1.28789 0.87186 0.95950 0.99564 1.74869 1.21527 1.20560 1.02738 1.78676 0.97786 1.11314 1.24033 1.78954 1.22810 1.17551 0.89044 1.21180 0.98511 0.79908 0.94610 0.90369 1.21820 1.00913 0.92132 0.97436 1.21774 0.99599 0.96740 0.97426 1.20663 0.95882 0.84001 0.96318 1.42575 1.54521 1.06242 1.35441 1.19657 1.20586 0.91950 1.06477 0.91502 1.25610 1.00706 0.98345 1.01804 1.69817 1.38701 1.14017 1.39192 0.85027 0.77544 0.78512 0.78390 1.19594 1.21388 1.21242 0.95287 0.92288 0.91486 0.91116 0.91269 0.87800 0.91011 0.89280 0.85576 0.78115 0.81492 0.68806 0.92471 0.92068 0.92565 0.91609 0.97608 0.97983 0.79241 0.93682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 8.21 71.98 0.59 -2.09 16 2 C -0.10 -1.80 2.32 -10.70 -0.02 -1.82 16 3 H 0.07 1.48 6.66 -2.39 -0.02 1.47 16 4 C -0.11 -1.05 5.42 30.63 0.17 -0.88 16 5 C -0.13 -0.31 5.74 30.67 0.18 -0.13 16 6 C 0.10 0.07 6.33 86.36 0.55 0.62 16 7 N -0.59 -6.93 2.42 -795.04 -1.93 -8.86 16 8 C 0.49 7.62 7.63 87.66 0.67 8.29 16 9 O -0.55 -16.31 11.12 -3.04 -0.03 -16.34 16 10 C 0.09 0.36 5.37 85.64 0.46 0.82 16 11 N -0.30 -4.46 3.19 -355.55 -1.13 -5.60 16 12 C 0.18 2.18 12.79 180.27 2.31 4.49 16 13 N -0.35 -8.56 12.36 -60.29 -0.74 -9.30 16 14 N -0.12 -3.88 13.43 37.01 0.50 -3.39 16 15 N -0.10 -2.66 12.31 37.02 0.46 -2.20 16 16 C 0.16 3.14 2.71 44.97 0.12 3.26 16 17 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 18 C -0.08 -2.58 2.65 30.59 0.08 -2.50 16 19 C -0.12 -4.27 5.12 30.59 0.16 -4.11 16 20 C 0.16 7.56 6.26 86.38 0.54 8.10 16 21 N -0.74 -42.48 5.60 -343.45 -1.92 -44.41 16 22 C -0.26 -15.75 9.99 84.03 0.84 -14.91 16 23 H 0.07 4.07 7.83 -2.91 -0.02 4.05 16 24 C -0.07 -4.43 5.50 84.86 0.47 -3.96 16 25 N -0.97 -61.75 13.06 21.65 0.28 -61.47 16 26 Si 0.98 48.94 29.55 68.60 2.03 50.96 16 27 H -0.27 -13.07 7.11 99.48 0.71 -12.36 16 28 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 29 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 30 H 0.03 0.76 6.35 -2.39 -0.02 0.74 16 31 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 32 H 0.07 1.03 5.97 -2.39 -0.01 1.01 16 33 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.10 -0.21 8.14 -2.39 -0.02 -0.23 16 36 H 0.07 0.23 6.34 -2.38 -0.02 0.21 16 37 H 0.09 -0.04 8.14 -2.39 -0.02 -0.06 16 38 H 0.13 -1.04 5.96 -2.39 -0.01 -1.06 16 39 H 0.20 -1.80 7.40 -2.39 -0.02 -1.82 16 40 H 0.17 -0.41 8.12 -2.39 -0.02 -0.43 16 41 H 0.30 -1.02 8.06 -2.91 -0.02 -1.04 16 42 H 0.06 2.05 6.45 -2.39 -0.02 2.04 16 43 H 0.06 2.08 5.22 -2.39 -0.01 2.07 16 44 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 45 H 0.07 2.32 6.33 -2.39 -0.02 2.31 16 46 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 47 H 0.00 0.11 8.14 -2.38 -0.02 0.09 16 48 H 0.38 22.01 7.67 -92.71 -0.71 21.30 16 49 H 0.25 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -97.95 380.33 4.86 -93.09 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: 0.26 Total: 12.33 kcal Atomic # 6 Polarization: -11.92 SS G_CDS: 7.10 Total: -4.82 kcal Atomic # 7 Polarization: -130.73 SS G_CDS: -4.49 Total: -135.22 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: -0.03 Total: -16.34 kcal Atomic # 14 Polarization: 48.94 SS G_CDS: 2.03 Total: 50.96 kcal Total: -97.95 4.86 -93.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264013146.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.128 kcal (2) G-P(sol) polarization free energy of solvation -97.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds