Wall clock time and date at job start Tue Mar 31 2020 19:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47075 * 2 1 4 4 C 1.50699 * 109.47473 * 120.00361 * 2 1 3 5 5 N 1.31069 * 126.65531 * 300.04347 * 4 2 1 6 6 N 1.28852 * 107.99005 * 179.97438 * 5 4 2 7 7 N 1.28742 * 109.38959 * 359.73177 * 6 5 4 8 8 N 1.29013 * 108.81286 * 0.44089 * 7 6 5 9 9 C 1.46499 * 126.43806 * 179.83325 * 8 7 6 10 10 C 1.50706 * 109.47214 * 269.68767 * 9 8 7 11 11 O 1.21280 * 119.99664 * 0.02562 * 10 9 8 12 12 N 1.34770 * 119.99869 * 180.02562 * 10 9 8 13 13 C 1.46504 * 119.99847 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.47209 * 180.02562 * 13 12 10 15 15 C 1.52998 * 109.46799 * 179.97438 * 14 13 12 16 16 N 1.46508 * 109.46704 * 179.97438 * 15 14 13 17 17 C 1.36937 * 119.99525 * 269.99957 * 16 15 14 18 18 H 1.07999 * 120.00087 * 140.54037 * 17 16 15 19 19 C 1.38813 * 120.00197 * 320.53245 * 17 16 15 20 20 N 1.31618 * 120.00277 * 340.28690 * 19 17 16 21 21 Si 1.86808 * 119.99927 * 160.28513 * 19 17 16 22 22 H 1.48499 * 109.46966 * 90.00058 * 21 19 17 23 23 H 1.48494 * 109.47240 * 210.00312 * 21 19 17 24 24 H 1.48506 * 109.46934 * 330.00390 * 21 19 17 25 25 C 1.46494 * 120.00310 * 89.99704 * 16 15 14 26 26 C 1.52991 * 117.50100 * 183.28550 * 25 16 15 27 27 C 1.52997 * 60.00232 * 252.51256 * 26 25 16 28 28 H 1.09001 * 109.47057 * 299.99582 * 1 2 3 29 29 H 1.08997 * 109.47394 * 59.99665 * 1 2 3 30 30 H 1.09006 * 109.47195 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47057 * 240.00418 * 2 1 3 32 32 H 1.08997 * 109.47152 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.47283 * 300.00403 * 3 2 1 34 34 H 1.09001 * 109.46837 * 60.00283 * 3 2 1 35 35 H 1.09000 * 109.47333 * 149.68858 * 9 8 7 36 36 H 1.09006 * 109.47492 * 29.68719 * 9 8 7 37 37 H 0.97001 * 120.00578 * 359.97438 * 12 10 9 38 38 H 1.09005 * 109.46725 * 299.99474 * 13 12 10 39 39 H 1.08993 * 109.47325 * 59.99868 * 13 12 10 40 40 H 1.09005 * 109.46818 * 299.99381 * 14 13 12 41 41 H 1.08993 * 109.47115 * 59.99703 * 14 13 12 42 42 H 1.08995 * 109.47109 * 299.99493 * 15 14 13 43 43 H 1.08993 * 109.47347 * 60.00069 * 15 14 13 44 44 H 0.96994 * 120.00151 * 175.01841 * 20 19 17 45 45 H 1.08995 * 115.54977 * 328.99916 * 25 16 15 46 46 H 1.09004 * 117.50303 * 0.02562 * 26 25 16 47 47 H 1.08998 * 117.49992 * 145.02109 * 26 25 16 48 48 H 1.09003 * 117.50356 * 252.50835 * 27 26 25 49 49 H 1.08999 * 117.51529 * 107.48038 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 7 1.7969 -0.3789 2.4764 6 7 2.3981 -1.2294 3.2349 7 7 3.0062 -2.0982 2.5049 8 7 2.8094 -1.8090 1.2631 9 6 3.3289 -2.5421 0.1061 10 6 4.6670 -1.9729 -0.2899 11 8 5.1402 -1.0465 0.3334 12 7 5.3376 -2.4935 -1.3366 13 6 6.6386 -1.9406 -1.7212 14 6 7.1805 -2.7054 -2.9305 15 6 8.5389 -2.1275 -3.3325 16 7 9.0581 -2.8602 -4.4901 17 6 9.8413 -3.9679 -4.3041 18 1 9.7219 -4.8278 -4.9465 19 6 10.7890 -3.9856 -3.2899 20 7 11.2141 -2.8552 -2.7666 21 14 11.4609 -5.6138 -2.6676 22 1 12.6615 -5.9880 -3.4573 23 1 11.8315 -5.4816 -1.2358 24 1 10.4235 -6.6662 -2.8153 25 6 8.7392 -2.4079 -5.8465 26 6 9.2465 -3.2587 -7.0124 27 6 9.8952 -1.9056 -6.7137 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1299 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 2.6326 -2.4467 -0.7271 36 1 3.4440 -3.5948 0.3646 37 1 4.9592 -3.2348 -1.8349 38 1 6.5239 -0.8878 -1.9793 39 1 7.3349 -2.0368 -0.8882 40 1 7.2951 -3.7584 -2.6729 41 1 6.4841 -2.6088 -3.7634 42 1 8.4240 -1.0747 -3.5902 43 1 9.2355 -2.2238 -2.4998 44 1 11.8210 -2.8689 -2.0102 45 1 7.7725 -1.9182 -5.9637 46 1 9.8173 -4.1553 -6.7704 47 1 8.6135 -3.3290 -7.8970 48 1 9.6891 -1.0857 -7.4017 49 1 10.8930 -1.9115 -6.2749 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265177511.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:28 Heat of formation + Delta-G solvation = 118.445743 kcal Electronic energy + Delta-G solvation = -28900.720234 eV Core-core repulsion = 24902.102628 eV Total energy + Delta-G solvation = -3998.617607 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -44.38144 -40.02032 -37.24022 -36.53363 -35.85092 -35.34678 -33.71609 -31.97416 -31.61082 -30.10318 -28.84437 -27.62070 -25.51358 -24.67292 -23.97827 -23.14627 -21.52969 -21.29775 -21.15521 -20.61861 -19.73628 -18.10726 -18.04569 -16.55542 -16.44127 -16.22564 -15.92811 -15.54949 -15.26372 -15.00683 -14.71834 -14.47136 -13.97438 -13.86271 -13.66128 -13.51200 -13.02372 -12.75349 -12.60897 -12.41767 -12.30682 -12.05401 -12.00663 -11.75659 -11.67896 -11.58438 -11.54235 -11.17658 -11.13781 -10.94616 -10.82705 -10.75317 -10.37438 -10.28913 -10.19605 -10.00813 -9.74520 -9.66095 -9.33869 -9.22723 -8.56551 -6.62771 -5.88176 -3.55552 0.97842 1.56145 2.09542 2.14477 2.85000 3.26830 3.36039 3.36616 3.55191 3.81309 4.08135 4.19389 4.34086 4.35556 4.53884 4.65994 4.81273 4.86527 5.03659 5.17895 5.21686 5.23540 5.32248 5.42001 5.44022 5.47086 5.51247 5.55944 5.76097 5.80992 5.83940 5.84977 5.89670 6.00493 6.09327 6.17275 6.22941 6.42790 6.48278 6.52261 6.60723 6.93502 6.98972 7.17657 7.18015 7.50330 7.70302 7.81719 8.40012 8.44602 9.05457 9.66224 10.24682 11.06783 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.015293 B = 0.002317 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.520032 B =12083.802268 C =13261.655889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.011 4.011 3 C -0.145 4.145 4 C 0.202 3.798 5 N -0.301 5.301 6 N -0.074 5.074 7 N -0.085 5.085 8 N -0.294 5.294 9 C 0.090 3.910 10 C 0.495 3.505 11 O -0.521 6.521 12 N -0.713 5.713 13 C 0.121 3.879 14 C -0.146 4.146 15 C 0.154 3.846 16 N -0.551 5.551 17 C -0.263 4.263 18 H 0.063 0.937 19 C 0.016 3.984 20 N -0.881 5.881 21 Si 0.894 3.106 22 H -0.285 1.285 23 H -0.288 1.288 24 H -0.277 1.277 25 C 0.120 3.880 26 C -0.196 4.196 27 C -0.221 4.221 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.057 0.943 31 H 0.090 0.910 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.139 0.861 36 H 0.143 0.857 37 H 0.403 0.597 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.052 0.948 42 H 0.029 0.971 43 H 0.096 0.904 44 H 0.256 0.744 45 H 0.085 0.915 46 H 0.097 0.903 47 H 0.073 0.927 48 H 0.069 0.931 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.823 2.506 -0.526 20.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.033 4.033 3 C -0.203 4.203 4 C -0.076 4.076 5 N -0.149 5.149 6 N -0.067 5.067 7 N -0.070 5.070 8 N -0.094 5.094 9 C -0.036 4.036 10 C 0.277 3.723 11 O -0.396 6.396 12 N -0.365 5.365 13 C -0.002 4.002 14 C -0.187 4.187 15 C 0.028 3.972 16 N -0.268 5.268 17 C -0.393 4.393 18 H 0.081 0.919 19 C -0.185 4.185 20 N -0.522 5.522 21 Si 0.723 3.277 22 H -0.211 1.211 23 H -0.214 1.214 24 H -0.202 1.202 25 C 0.011 3.989 26 C -0.234 4.234 27 C -0.262 4.262 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.076 0.924 31 H 0.109 0.891 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.156 0.844 36 H 0.161 0.839 37 H 0.238 0.762 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.071 0.929 42 H 0.048 0.952 43 H 0.113 0.887 44 H 0.066 0.934 45 H 0.103 0.897 46 H 0.115 0.885 47 H 0.091 0.909 48 H 0.087 0.913 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -20.149 3.047 1.496 20.433 hybrid contribution 0.518 -1.361 -0.939 1.732 sum -19.631 1.687 0.558 19.711 Atomic orbital electron populations 1.21853 0.91928 1.02656 1.03745 1.19797 0.97292 0.96652 0.89509 1.21836 1.02097 0.92951 1.03407 1.26082 0.94785 0.88743 0.98002 1.74945 1.20696 1.20954 0.98338 1.78612 1.06882 0.98855 1.22390 1.78903 1.19018 1.21879 0.87199 1.47854 1.33831 1.20884 1.06865 1.22036 0.96353 0.98848 0.86338 1.20260 0.86235 0.84274 0.81555 1.90835 1.68305 1.28151 1.52296 1.46058 1.22075 1.37010 1.31350 1.21586 0.81850 0.98041 0.98726 1.22492 1.00680 1.00906 0.94575 1.20746 0.91341 0.92110 0.93049 1.43338 1.55449 1.30321 0.97650 1.18987 1.11633 0.91753 1.16890 0.91906 1.25261 0.95221 0.96426 1.01607 1.70044 1.32735 1.24852 1.24599 0.86461 0.79105 0.83952 0.78177 1.21118 1.21375 1.20245 1.21228 0.93905 0.99367 0.84375 1.23015 1.05065 0.96167 0.99147 1.23347 1.01534 0.95680 1.05672 0.90923 0.90726 0.92402 0.89136 0.91778 0.90845 0.91046 0.84358 0.83883 0.76245 0.91517 0.91071 0.91327 0.92934 0.95240 0.88669 0.93396 0.89725 0.88506 0.90857 0.91298 0.88988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.78 9.17 37.15 0.34 -0.44 16 2 C -0.01 -0.08 3.26 -91.77 -0.30 -0.38 16 3 C -0.14 -1.12 9.18 37.16 0.34 -0.78 16 4 C 0.20 2.25 6.64 -155.44 -1.03 1.22 16 5 N -0.30 -4.24 12.36 32.70 0.40 -3.84 16 6 N -0.07 -1.16 13.43 60.35 0.81 -0.35 16 7 N -0.08 -1.23 13.29 60.35 0.80 -0.43 16 8 N -0.29 -3.33 2.83 -59.44 -0.17 -3.49 16 9 C 0.09 0.64 6.57 -5.19 -0.03 0.60 16 10 C 0.49 5.48 7.90 -10.99 -0.09 5.39 16 11 O -0.52 -8.52 16.43 5.56 0.09 -8.42 16 12 N -0.71 -7.15 5.56 -60.29 -0.33 -7.48 16 13 C 0.12 1.67 5.67 -4.04 -0.02 1.64 16 14 C -0.15 -2.28 5.65 -26.73 -0.15 -2.43 16 15 C 0.15 3.17 5.33 -4.04 -0.02 3.15 16 16 N -0.55 -12.45 2.75 -165.67 -0.46 -12.91 16 17 C -0.26 -6.59 8.47 -15.06 -0.13 -6.71 16 18 H 0.06 1.59 6.74 -52.49 -0.35 1.23 16 19 C 0.02 0.42 4.98 -17.43 -0.09 0.33 16 20 N -0.88 -24.00 11.50 55.49 0.64 -23.36 16 21 Si 0.89 20.41 29.60 -169.99 -5.03 15.38 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 25 C 0.12 2.38 6.56 -67.94 -0.45 1.94 16 26 C -0.20 -3.64 9.80 -26.74 -0.26 -3.91 16 27 C -0.22 -4.33 10.36 -26.73 -0.28 -4.61 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.09 0.45 6.85 -51.93 -0.36 0.09 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.14 0.34 7.13 -51.93 -0.37 -0.03 16 36 H 0.14 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.40 2.68 8.47 -40.82 -0.35 2.34 16 38 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 40 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.03 0.58 8.07 -51.93 -0.42 0.16 16 43 H 0.10 2.28 5.59 -51.93 -0.29 1.99 16 44 H 0.26 6.80 8.32 -40.82 -0.34 6.46 16 45 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 46 H 0.10 1.98 6.46 -51.93 -0.34 1.65 16 47 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 48 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 49 H 0.09 2.09 8.14 -51.93 -0.42 1.67 16 LS Contribution 408.38 15.07 6.15 6.15 Total: -1.00 -33.99 408.38 -7.20 -41.19 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -7.95 Total: 2.54 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: -2.17 Total: -4.98 kcal Atomic # 7 Polarization: -53.56 SS G_CDS: 1.70 Total: -51.87 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: 0.09 Total: -8.42 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.03 Total: 15.38 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.99 -7.20 -41.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265177511.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.639 kcal (2) G-P(sol) polarization free energy of solvation -33.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds