Wall clock time and date at job start Tue Mar 31 2020 19:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47075 * 2 1 4 4 C 1.50699 * 109.47473 * 120.00361 * 2 1 3 5 5 N 1.31069 * 126.65531 * 300.04347 * 4 2 1 6 6 N 1.28852 * 107.99005 * 179.97438 * 5 4 2 7 7 N 1.28742 * 109.38959 * 359.73177 * 6 5 4 8 8 N 1.29013 * 108.81286 * 0.44089 * 7 6 5 9 9 C 1.46499 * 126.43806 * 179.83325 * 8 7 6 10 10 C 1.50706 * 109.47214 * 269.68767 * 9 8 7 11 11 O 1.21280 * 119.99664 * 0.02562 * 10 9 8 12 12 N 1.34770 * 119.99869 * 180.02562 * 10 9 8 13 13 C 1.46504 * 119.99847 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.47209 * 180.02562 * 13 12 10 15 15 C 1.52998 * 109.46799 * 179.97438 * 14 13 12 16 16 N 1.46508 * 109.46704 * 179.97438 * 15 14 13 17 17 C 1.36937 * 119.99525 * 269.99957 * 16 15 14 18 18 H 1.07999 * 120.00087 * 140.54037 * 17 16 15 19 19 C 1.38813 * 120.00197 * 320.53245 * 17 16 15 20 20 N 1.31618 * 120.00277 * 340.28690 * 19 17 16 21 21 Si 1.86808 * 119.99927 * 160.28513 * 19 17 16 22 22 H 1.48499 * 109.46966 * 90.00058 * 21 19 17 23 23 H 1.48494 * 109.47240 * 210.00312 * 21 19 17 24 24 H 1.48506 * 109.46934 * 330.00390 * 21 19 17 25 25 C 1.46494 * 120.00310 * 89.99704 * 16 15 14 26 26 C 1.52991 * 117.50100 * 183.28550 * 25 16 15 27 27 C 1.52997 * 60.00232 * 252.51256 * 26 25 16 28 28 H 1.09001 * 109.47057 * 299.99582 * 1 2 3 29 29 H 1.08997 * 109.47394 * 59.99665 * 1 2 3 30 30 H 1.09006 * 109.47195 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47057 * 240.00418 * 2 1 3 32 32 H 1.08997 * 109.47152 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.47283 * 300.00403 * 3 2 1 34 34 H 1.09001 * 109.46837 * 60.00283 * 3 2 1 35 35 H 1.09000 * 109.47333 * 149.68858 * 9 8 7 36 36 H 1.09006 * 109.47492 * 29.68719 * 9 8 7 37 37 H 0.97001 * 120.00578 * 359.97438 * 12 10 9 38 38 H 1.09005 * 109.46725 * 299.99474 * 13 12 10 39 39 H 1.08993 * 109.47325 * 59.99868 * 13 12 10 40 40 H 1.09005 * 109.46818 * 299.99381 * 14 13 12 41 41 H 1.08993 * 109.47115 * 59.99703 * 14 13 12 42 42 H 1.08995 * 109.47109 * 299.99493 * 15 14 13 43 43 H 1.08993 * 109.47347 * 60.00069 * 15 14 13 44 44 H 0.96994 * 120.00151 * 175.01841 * 20 19 17 45 45 H 1.08995 * 115.54977 * 328.99916 * 25 16 15 46 46 H 1.09004 * 117.50303 * 0.02562 * 26 25 16 47 47 H 1.08998 * 117.49992 * 145.02109 * 26 25 16 48 48 H 1.09003 * 117.50356 * 252.50835 * 27 26 25 49 49 H 1.08999 * 117.51529 * 107.48038 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 7 1.7969 -0.3789 2.4764 6 7 2.3981 -1.2294 3.2349 7 7 3.0062 -2.0982 2.5049 8 7 2.8094 -1.8090 1.2631 9 6 3.3289 -2.5421 0.1061 10 6 4.6670 -1.9729 -0.2899 11 8 5.1402 -1.0465 0.3334 12 7 5.3376 -2.4935 -1.3366 13 6 6.6386 -1.9406 -1.7212 14 6 7.1805 -2.7054 -2.9305 15 6 8.5389 -2.1275 -3.3325 16 7 9.0581 -2.8602 -4.4901 17 6 9.8413 -3.9679 -4.3041 18 1 9.7219 -4.8278 -4.9465 19 6 10.7890 -3.9856 -3.2899 20 7 11.2141 -2.8552 -2.7666 21 14 11.4609 -5.6138 -2.6676 22 1 12.6615 -5.9880 -3.4573 23 1 11.8315 -5.4816 -1.2358 24 1 10.4235 -6.6662 -2.8153 25 6 8.7392 -2.4079 -5.8465 26 6 9.2465 -3.2587 -7.0124 27 6 9.8952 -1.9056 -6.7137 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1299 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 2.6326 -2.4467 -0.7271 36 1 3.4440 -3.5948 0.3646 37 1 4.9592 -3.2348 -1.8349 38 1 6.5239 -0.8878 -1.9793 39 1 7.3349 -2.0368 -0.8882 40 1 7.2951 -3.7584 -2.6729 41 1 6.4841 -2.6088 -3.7634 42 1 8.4240 -1.0747 -3.5902 43 1 9.2355 -2.2238 -2.4998 44 1 11.8210 -2.8689 -2.0102 45 1 7.7725 -1.9182 -5.9637 46 1 9.8173 -4.1553 -6.7704 47 1 8.6135 -3.3290 -7.8970 48 1 9.6891 -1.0857 -7.4017 49 1 10.8930 -1.9115 -6.2749 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265177511.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:27 Heat of formation + Delta-G solvation = 95.102047 kcal Electronic energy + Delta-G solvation = -28901.732493 eV Core-core repulsion = 24902.102628 eV Total energy + Delta-G solvation = -3999.629865 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -45.30801 -40.97938 -38.84091 -37.23677 -36.85015 -36.35265 -35.28486 -33.47614 -32.56886 -31.46760 -29.91386 -28.11124 -27.12153 -25.50084 -25.38340 -24.24089 -23.02490 -22.50923 -22.10580 -21.56539 -21.31795 -19.01964 -18.85457 -18.22462 -17.40551 -17.28410 -17.08549 -16.71774 -16.51310 -16.17918 -15.91368 -15.57811 -15.23884 -14.96153 -14.45741 -14.37958 -14.19768 -13.92803 -13.82857 -13.62257 -13.29361 -13.16154 -13.09455 -12.78847 -12.69343 -12.57904 -12.53395 -12.44008 -12.30253 -12.29078 -12.28565 -12.03832 -11.89953 -11.85979 -11.41457 -11.28438 -11.23117 -10.99643 -10.84977 -10.47932 -10.24678 -8.48603 -7.78161 -5.50473 0.07946 0.83515 1.11982 1.30241 1.42777 1.47159 1.54453 1.99763 2.48547 2.87365 3.14750 3.16929 3.39897 3.42889 3.55582 3.61118 3.89805 4.01734 4.05357 4.17437 4.20071 4.25437 4.35724 4.37509 4.48153 4.57416 4.61426 4.63407 4.77013 4.77700 4.83388 4.90398 4.91277 4.95280 4.98006 5.10093 5.13188 5.14240 5.28094 5.32558 5.36575 5.39495 5.50416 5.58299 5.69169 5.84963 6.35036 6.47419 7.02199 7.17462 7.47043 7.86404 8.37346 9.10228 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.015293 B = 0.002317 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.520032 B =12083.802268 C =13261.655889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.011 4.011 3 C -0.143 4.143 4 C 0.209 3.791 5 N -0.330 5.330 6 N -0.108 5.108 7 N -0.106 5.106 8 N -0.292 5.292 9 C 0.089 3.911 10 C 0.496 3.504 11 O -0.580 6.580 12 N -0.696 5.696 13 C 0.134 3.866 14 C -0.121 4.121 15 C 0.152 3.848 16 N -0.569 5.569 17 C -0.255 4.255 18 H 0.061 0.939 19 C -0.034 4.034 20 N -0.915 5.915 21 Si 0.948 3.052 22 H -0.289 1.289 23 H -0.296 1.296 24 H -0.264 1.264 25 C 0.106 3.894 26 C -0.180 4.180 27 C -0.227 4.227 28 H 0.054 0.946 29 H 0.100 0.900 30 H 0.066 0.934 31 H 0.124 0.876 32 H 0.036 0.964 33 H 0.102 0.898 34 H 0.056 0.944 35 H 0.197 0.803 36 H 0.175 0.825 37 H 0.424 0.576 38 H 0.065 0.935 39 H 0.039 0.961 40 H 0.057 0.943 41 H 0.080 0.920 42 H 0.030 0.970 43 H 0.056 0.944 44 H 0.248 0.752 45 H 0.119 0.881 46 H 0.072 0.928 47 H 0.113 0.887 48 H 0.100 0.900 49 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.937 1.432 -3.439 24.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.033 4.033 3 C -0.201 4.201 4 C -0.069 4.069 5 N -0.179 5.179 6 N -0.102 5.102 7 N -0.092 5.092 8 N -0.093 5.093 9 C -0.035 4.035 10 C 0.281 3.719 11 O -0.459 6.459 12 N -0.349 5.349 13 C 0.010 3.990 14 C -0.161 4.161 15 C 0.025 3.975 16 N -0.286 5.286 17 C -0.386 4.386 18 H 0.078 0.922 19 C -0.232 4.232 20 N -0.559 5.559 21 Si 0.776 3.224 22 H -0.216 1.216 23 H -0.223 1.223 24 H -0.189 1.189 25 C -0.002 4.002 26 C -0.218 4.218 27 C -0.267 4.267 28 H 0.073 0.927 29 H 0.119 0.881 30 H 0.085 0.915 31 H 0.142 0.858 32 H 0.055 0.945 33 H 0.121 0.879 34 H 0.075 0.925 35 H 0.214 0.786 36 H 0.192 0.808 37 H 0.263 0.737 38 H 0.083 0.917 39 H 0.057 0.943 40 H 0.076 0.924 41 H 0.098 0.902 42 H 0.048 0.952 43 H 0.074 0.926 44 H 0.058 0.942 45 H 0.136 0.864 46 H 0.091 0.909 47 H 0.131 0.869 48 H 0.118 0.882 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -23.301 1.921 -1.461 23.425 hybrid contribution 1.507 -0.963 -0.160 1.796 sum -21.793 0.958 -1.621 21.874 Atomic orbital electron populations 1.21850 0.90258 1.03410 1.04174 1.20142 0.98522 0.95884 0.88724 1.21829 1.00308 0.93830 1.04166 1.26833 0.93520 0.88210 0.98322 1.74852 1.21689 1.21491 0.99856 1.78565 1.08124 0.99818 1.23689 1.78788 1.19395 1.22289 0.88737 1.48123 1.33327 1.21091 1.06774 1.22543 0.94837 0.99405 0.86697 1.20895 0.87289 0.83208 0.80536 1.90833 1.70026 1.30945 1.54119 1.45732 1.20496 1.37266 1.31393 1.21152 0.83096 0.97931 0.96846 1.22092 0.98347 0.99722 0.95979 1.20666 0.92995 0.92438 0.91355 1.43574 1.55608 1.30058 0.99365 1.19160 1.10868 0.92514 1.16019 0.92184 1.25872 0.96104 0.98610 1.02587 1.70182 1.34031 1.26493 1.25163 0.85610 0.78520 0.81373 0.76908 1.21596 1.22276 1.18888 1.21579 0.95159 1.00265 0.83152 1.23020 1.04504 0.94395 0.99904 1.23268 0.99304 0.97728 1.06445 0.92699 0.88105 0.91498 0.85798 0.94453 0.87920 0.92514 0.78573 0.80808 0.73717 0.91678 0.94255 0.92398 0.90159 0.95163 0.92608 0.94233 0.86358 0.90926 0.86923 0.88214 0.93292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 9.17 71.98 0.66 -0.39 16 2 C -0.01 -0.13 3.26 -11.54 -0.04 -0.17 16 3 C -0.14 -1.99 9.18 71.98 0.66 -1.33 16 4 C 0.21 4.38 6.64 138.13 0.92 5.29 16 5 N -0.33 -9.42 12.36 -50.45 -0.62 -10.05 16 6 N -0.11 -3.51 13.43 37.01 0.50 -3.02 16 7 N -0.11 -3.07 13.29 37.02 0.49 -2.58 16 8 N -0.29 -6.09 2.83 -341.97 -0.97 -7.06 16 9 C 0.09 0.91 6.57 85.64 0.56 1.47 16 10 C 0.50 9.87 7.90 87.66 0.69 10.56 16 11 O -0.58 -18.88 16.43 -3.03 -0.05 -18.93 16 12 N -0.70 -12.00 5.56 -463.05 -2.57 -14.58 16 13 C 0.13 3.58 5.67 86.38 0.49 4.07 16 14 C -0.12 -3.57 5.65 30.60 0.17 -3.40 16 15 C 0.15 6.24 5.33 86.38 0.46 6.70 16 16 N -0.57 -25.37 2.75 -678.07 -1.86 -27.23 16 17 C -0.26 -12.80 8.47 84.03 0.71 -12.09 16 18 H 0.06 3.01 6.74 -2.91 -0.02 2.99 16 19 C -0.03 -1.79 4.98 84.86 0.42 -1.37 16 20 N -0.92 -51.82 11.50 21.65 0.25 -51.57 16 21 Si 0.95 42.71 29.60 68.60 2.03 44.74 16 22 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 23 H -0.30 -13.63 7.11 99.48 0.71 -12.93 16 24 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 25 C 0.11 3.98 6.56 44.99 0.30 4.27 16 26 C -0.18 -6.25 9.80 30.59 0.30 -5.95 16 27 C -0.23 -8.55 10.36 30.59 0.32 -8.23 16 28 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.07 0.41 8.14 -2.38 -0.02 0.39 16 31 H 0.12 0.59 6.85 -2.39 -0.02 0.57 16 32 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.06 0.94 8.14 -2.39 -0.02 0.93 16 35 H 0.20 -0.30 7.13 -2.39 -0.02 -0.32 16 36 H 0.17 0.80 8.14 -2.38 -0.02 0.78 16 37 H 0.42 3.78 8.47 -92.71 -0.79 3.00 16 38 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 39 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 41 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.03 1.20 8.07 -2.39 -0.02 1.18 16 43 H 0.06 2.78 5.59 -2.39 -0.01 2.77 16 44 H 0.25 13.84 8.32 -92.71 -0.77 13.07 16 45 H 0.12 3.62 8.14 -2.39 -0.02 3.60 16 46 H 0.07 2.88 6.46 -2.39 -0.02 2.87 16 47 H 0.11 3.04 8.14 -2.39 -0.02 3.02 16 48 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 49 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -81.31 408.38 3.99 -77.32 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: 0.17 Total: 13.51 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: 6.63 Total: -0.58 kcal Atomic # 7 Polarization: -111.29 SS G_CDS: -4.79 Total: -116.08 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: -0.05 Total: -18.93 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -81.31 3.99 -77.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265177511.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.427 kcal (2) G-P(sol) polarization free energy of solvation -81.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds