Wall clock time and date at job start Tue Mar 31 2020 20:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47428 * 2 1 4 4 N 1.46504 * 109.47059 * 179.97438 * 3 2 1 5 5 C 1.34776 * 119.99972 * 270.00133 * 4 3 2 6 6 O 1.21279 * 119.99554 * 180.02562 * 5 4 3 7 7 C 1.50695 * 119.99940 * 0.02562 * 5 4 3 8 8 C 1.53002 * 109.46706 * 179.97438 * 7 5 4 9 9 N 1.46504 * 109.47007 * 180.02562 * 8 7 5 10 10 C 1.34602 * 126.43757 * 125.00188 * 9 8 7 11 11 N 1.31074 * 106.67577 * 180.02562 * 10 9 8 12 12 N 1.28841 * 107.99430 * 359.97438 * 11 10 9 13 13 N 1.28741 * 109.39775 * 359.73299 * 12 11 10 14 14 C 1.46504 * 119.99787 * 90.00170 * 4 3 2 15 15 C 1.53081 * 109.43848 * 119.79444 * 14 4 3 16 16 C 1.53190 * 109.29209 * 181.23616 * 15 14 4 17 17 N 1.46921 * 108.89311 * 305.57883 * 16 15 14 18 18 C 1.36940 * 120.63187 * 233.51481 * 17 16 15 19 19 H 1.08001 * 120.00319 * 152.61971 * 18 17 16 20 20 C 1.38813 * 119.99903 * 332.62203 * 18 17 16 21 21 N 1.31624 * 120.00070 * 159.34992 * 20 18 17 22 22 Si 1.86800 * 120.00077 * 339.35529 * 20 18 17 23 23 H 1.48494 * 109.47321 * 92.87851 * 22 20 18 24 24 H 1.48501 * 109.47194 * 212.88430 * 22 20 18 25 25 H 1.48509 * 109.46983 * 332.87654 * 22 20 18 26 26 C 1.46923 * 118.74178 * 53.54201 * 17 16 15 27 27 C 1.53035 * 109.45960 * 239.99839 * 14 4 3 28 28 H 1.09002 * 109.46687 * 59.99627 * 1 2 3 29 29 H 1.08995 * 109.47301 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46828 * 300.00132 * 1 2 3 31 31 H 1.09012 * 109.46948 * 240.00182 * 2 1 3 32 32 H 1.09004 * 109.47139 * 120.00636 * 2 1 3 33 33 H 1.08999 * 109.47224 * 60.00110 * 3 2 1 34 34 H 1.09002 * 109.47491 * 299.99881 * 3 2 1 35 35 H 1.09000 * 109.47243 * 299.99932 * 7 5 4 36 36 H 1.08998 * 109.47097 * 60.00518 * 7 5 4 37 37 H 1.08995 * 109.47682 * 300.00398 * 8 7 5 38 38 H 1.09006 * 109.47314 * 60.00775 * 8 7 5 39 39 H 1.07993 * 126.66076 * 0.03295 * 10 9 8 40 40 H 1.08998 * 109.46073 * 359.97381 * 14 4 3 41 41 H 1.08992 * 109.38800 * 61.36034 * 15 14 4 42 42 H 1.09002 * 109.61927 * 301.25313 * 15 14 4 43 43 H 1.08999 * 109.58729 * 185.71870 * 16 15 14 44 44 H 1.09004 * 109.58886 * 65.43758 * 16 15 14 45 45 H 0.97001 * 119.99914 * 180.02562 * 21 20 18 46 46 H 1.09004 * 109.59094 * 66.17180 * 26 17 16 47 47 H 1.09001 * 109.59077 * 186.46452 * 26 17 16 48 48 H 1.09002 * 109.49848 * 58.67960 * 27 14 4 49 49 H 1.09002 * 109.52425 * 298.59433 * 27 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4423 0.0006 5 6 4.1785 1.4424 1.1681 6 8 5.3913 1.4428 1.1685 7 6 3.4244 1.4421 2.4728 8 6 4.4183 1.4416 3.6361 9 7 3.6853 1.4407 4.9046 10 6 3.8233 0.5531 5.9070 11 7 2.9855 0.9150 6.8479 12 7 2.3657 1.9700 6.4446 13 7 2.7903 2.2939 5.2732 14 6 4.2381 1.4421 -1.2679 15 6 5.1141 2.6948 -1.3502 16 6 5.8554 2.7068 -2.6908 17 7 6.5894 1.4429 -2.8399 18 6 7.9312 1.4434 -3.1137 19 1 8.5467 0.6133 -2.7998 20 6 8.5002 2.5108 -3.7946 21 7 9.7956 2.7289 -3.7119 22 14 7.4274 3.6380 -4.8282 23 1 6.9907 4.7956 -4.0071 24 1 8.2031 4.1247 -5.9972 25 1 6.2356 2.8894 -5.3021 26 6 5.8565 0.1783 -2.6902 27 6 5.1178 0.1925 -1.3481 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8901 32 1 1.8933 -0.5139 0.8900 33 1 1.6768 1.9563 0.8900 34 1 1.6768 1.9564 -0.8900 35 1 2.7975 2.3318 2.5304 36 1 2.7981 0.5519 2.5302 37 1 5.0450 0.5517 3.5784 38 1 5.0450 2.3317 3.5790 39 1 4.4942 -0.2929 5.9314 40 1 3.5300 1.4416 -2.0965 41 1 5.8372 2.6849 -0.5348 42 1 4.4890 3.5844 -1.2721 43 1 6.5562 3.5413 -2.7134 44 1 5.1374 2.8105 -3.5044 45 1 10.1931 3.4750 -4.1875 46 1 5.1369 0.0747 -3.5023 47 1 6.5579 -0.6557 -2.7147 48 1 4.4938 -0.6976 -1.2669 49 1 5.8426 0.2043 -0.5341 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265341822.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:24 Heat of formation + Delta-G solvation = 109.073332 kcal Electronic energy + Delta-G solvation = -30209.833789 eV Core-core repulsion = 26210.809764 eV Total energy + Delta-G solvation = -3999.024025 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -44.47591 -40.59378 -37.69740 -36.40498 -36.24279 -33.64384 -32.82660 -32.33748 -31.71372 -30.41656 -30.14805 -26.66318 -26.37623 -24.69458 -24.12283 -23.11603 -22.73008 -22.02762 -21.91277 -19.94616 -19.09427 -18.11023 -17.40520 -17.02745 -16.62199 -16.36171 -15.99002 -15.92265 -15.20752 -14.84777 -14.51399 -14.18107 -14.11332 -13.76278 -13.60519 -13.53042 -13.15244 -13.08440 -12.93937 -12.64889 -12.50015 -12.47308 -12.14027 -12.01669 -11.84946 -11.73409 -11.68588 -11.48402 -11.24708 -11.19041 -11.03826 -10.83387 -10.66000 -10.45746 -10.30159 -10.10830 -9.82390 -9.53679 -9.46878 -8.66653 -8.59170 -6.98099 -5.94001 -3.29445 0.92375 1.58604 1.94568 2.44199 2.82203 3.30833 3.46697 3.49227 3.80976 3.89489 4.10163 4.18634 4.41853 4.48328 4.52787 4.61264 4.75264 4.86955 4.93865 4.96441 5.04536 5.11065 5.17218 5.18764 5.25358 5.28919 5.36500 5.40022 5.47398 5.55659 5.65914 5.68399 5.79218 5.85906 5.89321 5.99176 6.05000 6.14428 6.24037 6.35996 6.58877 6.61246 6.68286 6.81813 6.96697 7.34369 7.96827 8.04450 8.28575 8.33900 8.94495 9.72690 10.09741 11.22154 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.014411 B = 0.002964 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.497247 B = 9445.499872 C =10582.427840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.143 4.143 3 C 0.104 3.896 4 N -0.605 5.605 5 C 0.518 3.482 6 O -0.518 6.518 7 C -0.157 4.157 8 C 0.129 3.871 9 N -0.306 5.306 10 C 0.162 3.838 11 N -0.310 5.310 12 N -0.079 5.079 13 N -0.093 5.093 14 C 0.160 3.840 15 C -0.148 4.148 16 C 0.130 3.870 17 N -0.603 5.603 18 C -0.257 4.257 19 H 0.085 0.915 20 C 0.022 3.978 21 N -0.908 5.908 22 Si 0.882 3.118 23 H -0.289 1.289 24 H -0.304 1.304 25 H -0.271 1.271 26 C 0.153 3.847 27 C -0.147 4.147 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.110 0.890 36 H 0.101 0.899 37 H 0.125 0.875 38 H 0.118 0.882 39 H 0.235 0.765 40 H 0.079 0.921 41 H 0.088 0.912 42 H 0.050 0.950 43 H 0.074 0.926 44 H 0.022 0.978 45 H 0.262 0.738 46 H 0.020 0.980 47 H 0.065 0.935 48 H 0.050 0.950 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.255 -6.032 12.117 22.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.181 4.181 3 C -0.019 4.019 4 N -0.338 5.338 5 C 0.304 3.696 6 O -0.394 6.394 7 C -0.198 4.198 8 C 0.007 3.993 9 N -0.108 5.108 10 C -0.136 4.136 11 N -0.159 5.159 12 N -0.073 5.073 13 N -0.079 5.079 14 C 0.058 3.942 15 C -0.188 4.188 16 C 0.004 3.996 17 N -0.326 5.326 18 C -0.385 4.385 19 H 0.103 0.897 20 C -0.176 4.176 21 N -0.552 5.552 22 Si 0.713 3.287 23 H -0.217 1.217 24 H -0.232 1.232 25 H -0.196 1.196 26 C 0.027 3.973 27 C -0.187 4.187 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.128 0.872 36 H 0.119 0.881 37 H 0.143 0.857 38 H 0.136 0.864 39 H 0.251 0.749 40 H 0.097 0.903 41 H 0.107 0.893 42 H 0.068 0.932 43 H 0.092 0.908 44 H 0.040 0.960 45 H 0.072 0.928 46 H 0.038 0.962 47 H 0.083 0.917 48 H 0.068 0.932 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -18.424 -5.120 12.610 22.906 hybrid contribution 0.075 0.149 -1.212 1.223 sum -18.349 -4.971 11.398 22.166 Atomic orbital electron populations 1.21713 0.95035 1.02089 1.02036 1.21982 0.96167 0.97098 1.02897 1.21748 0.79679 0.97019 1.03480 1.48248 1.06295 1.72861 1.06346 1.19984 0.87886 0.77060 0.84672 1.90792 1.13206 1.48447 1.86954 1.21986 0.99322 1.06188 0.92291 1.22070 0.92921 1.08059 0.76206 1.48852 1.27169 1.18116 1.16706 1.27798 1.01976 0.98872 0.85003 1.75015 1.07766 1.08684 1.24388 1.78653 1.18674 1.07465 1.02514 1.78879 1.03802 1.14660 1.10577 1.21127 0.93152 0.97029 0.82893 1.22471 0.99271 0.95110 1.01971 1.21290 0.94733 0.90504 0.93052 1.44326 1.06573 0.99300 1.82435 1.18914 0.81504 1.07504 1.30561 0.89739 1.25275 0.95256 0.98169 0.98940 1.69844 1.10586 1.30630 1.44092 0.86952 0.80464 0.80610 0.80659 1.21701 1.23192 1.19623 1.20862 0.94261 0.89638 0.92584 1.22441 0.99259 0.95015 1.01979 0.92366 0.92397 0.92628 0.91085 0.92022 0.90485 0.89956 0.87179 0.88117 0.85690 0.86398 0.74856 0.90322 0.89342 0.93172 0.90769 0.96005 0.92807 0.96244 0.91664 0.93154 0.89550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.91 37.16 0.37 -0.48 16 2 C -0.14 -0.96 6.26 -26.73 -0.17 -1.13 16 3 C 0.10 0.78 5.18 -4.04 -0.02 0.76 16 4 N -0.61 -6.59 2.42 -166.04 -0.40 -6.99 16 5 C 0.52 5.78 7.10 -10.99 -0.08 5.70 16 6 O -0.52 -7.86 12.23 5.56 0.07 -7.80 16 7 C -0.16 -1.13 4.40 -27.88 -0.12 -1.25 16 8 C 0.13 0.87 5.77 -4.04 -0.02 0.84 16 9 N -0.31 -2.48 3.44 -62.55 -0.22 -2.70 16 10 C 0.16 1.17 12.79 -90.38 -1.16 0.02 16 11 N -0.31 -3.44 12.36 29.59 0.37 -3.08 16 12 N -0.08 -1.00 13.43 60.35 0.81 -0.19 16 13 N -0.09 -1.03 13.08 60.35 0.79 -0.24 16 14 C 0.16 2.28 2.50 -67.87 -0.17 2.11 16 15 C -0.15 -2.61 5.29 -26.59 -0.14 -2.75 16 16 C 0.13 2.80 4.20 -3.71 -0.02 2.79 16 17 N -0.60 -14.16 2.77 -172.32 -0.48 -14.64 16 18 C -0.26 -7.18 10.03 -15.06 -0.15 -7.33 16 19 H 0.09 2.53 8.06 -52.49 -0.42 2.11 16 20 C 0.02 0.65 5.23 -17.43 -0.09 0.55 16 21 N -0.91 -27.99 13.97 55.49 0.78 -27.22 16 22 Si 0.88 22.28 24.34 -169.99 -4.14 18.15 16 23 H -0.29 -7.06 6.62 56.52 0.37 -6.69 16 24 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 25 H -0.27 -6.65 6.64 56.52 0.38 -6.28 16 26 C 0.15 2.92 6.52 -3.71 -0.02 2.89 16 27 C -0.15 -2.33 5.27 -26.61 -0.14 -2.47 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 32 H 0.06 0.41 7.22 -51.93 -0.37 0.03 16 33 H 0.08 0.46 6.44 -51.93 -0.33 0.13 16 34 H 0.08 0.59 7.92 -51.93 -0.41 0.18 16 35 H 0.11 0.76 7.40 -51.93 -0.38 0.38 16 36 H 0.10 0.59 7.18 -51.93 -0.37 0.21 16 37 H 0.12 0.63 8.04 -51.93 -0.42 0.21 16 38 H 0.12 0.89 8.10 -51.93 -0.42 0.47 16 39 H 0.24 0.51 8.06 -52.49 -0.42 0.08 16 40 H 0.08 1.04 7.79 -51.93 -0.40 0.64 16 41 H 0.09 1.78 6.21 -51.93 -0.32 1.46 16 42 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.07 1.78 4.50 -51.93 -0.23 1.55 16 44 H 0.02 0.46 7.07 -51.93 -0.37 0.09 16 45 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 46 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.06 1.26 7.93 -51.93 -0.41 0.85 16 48 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 49 H 0.09 1.59 6.21 -51.93 -0.32 1.27 16 LS Contribution 382.27 15.07 5.76 5.76 Total: -1.00 -35.38 382.27 -6.37 -41.74 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -7.77 Total: -3.06 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: -1.93 Total: 0.26 kcal Atomic # 7 Polarization: -56.71 SS G_CDS: 1.65 Total: -55.06 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: 0.07 Total: -7.80 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.14 Total: 18.15 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.38 -6.37 -41.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265341822.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.818 kcal (2) G-P(sol) polarization free energy of solvation -35.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds