Wall clock time and date at job start Tue Mar 31 2020 20:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47428 * 2 1 4 4 N 1.46504 * 109.47059 * 179.97438 * 3 2 1 5 5 C 1.34776 * 119.99972 * 270.00133 * 4 3 2 6 6 O 1.21279 * 119.99554 * 180.02562 * 5 4 3 7 7 C 1.50695 * 119.99940 * 0.02562 * 5 4 3 8 8 C 1.53002 * 109.46706 * 179.97438 * 7 5 4 9 9 N 1.46504 * 109.47007 * 180.02562 * 8 7 5 10 10 C 1.34602 * 126.43757 * 125.00188 * 9 8 7 11 11 N 1.31074 * 106.67577 * 180.02562 * 10 9 8 12 12 N 1.28841 * 107.99430 * 359.97438 * 11 10 9 13 13 N 1.28741 * 109.39775 * 359.73299 * 12 11 10 14 14 C 1.46504 * 119.99787 * 90.00170 * 4 3 2 15 15 C 1.53081 * 109.43848 * 119.79444 * 14 4 3 16 16 C 1.53190 * 109.29209 * 181.23616 * 15 14 4 17 17 N 1.46921 * 108.89311 * 305.57883 * 16 15 14 18 18 C 1.36940 * 120.63187 * 233.51481 * 17 16 15 19 19 H 1.08001 * 120.00319 * 152.61971 * 18 17 16 20 20 C 1.38813 * 119.99903 * 332.62203 * 18 17 16 21 21 N 1.31624 * 120.00070 * 159.34992 * 20 18 17 22 22 Si 1.86800 * 120.00077 * 339.35529 * 20 18 17 23 23 H 1.48494 * 109.47321 * 92.87851 * 22 20 18 24 24 H 1.48501 * 109.47194 * 212.88430 * 22 20 18 25 25 H 1.48509 * 109.46983 * 332.87654 * 22 20 18 26 26 C 1.46923 * 118.74178 * 53.54201 * 17 16 15 27 27 C 1.53035 * 109.45960 * 239.99839 * 14 4 3 28 28 H 1.09002 * 109.46687 * 59.99627 * 1 2 3 29 29 H 1.08995 * 109.47301 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46828 * 300.00132 * 1 2 3 31 31 H 1.09012 * 109.46948 * 240.00182 * 2 1 3 32 32 H 1.09004 * 109.47139 * 120.00636 * 2 1 3 33 33 H 1.08999 * 109.47224 * 60.00110 * 3 2 1 34 34 H 1.09002 * 109.47491 * 299.99881 * 3 2 1 35 35 H 1.09000 * 109.47243 * 299.99932 * 7 5 4 36 36 H 1.08998 * 109.47097 * 60.00518 * 7 5 4 37 37 H 1.08995 * 109.47682 * 300.00398 * 8 7 5 38 38 H 1.09006 * 109.47314 * 60.00775 * 8 7 5 39 39 H 1.07993 * 126.66076 * 0.03295 * 10 9 8 40 40 H 1.08998 * 109.46073 * 359.97381 * 14 4 3 41 41 H 1.08992 * 109.38800 * 61.36034 * 15 14 4 42 42 H 1.09002 * 109.61927 * 301.25313 * 15 14 4 43 43 H 1.08999 * 109.58729 * 185.71870 * 16 15 14 44 44 H 1.09004 * 109.58886 * 65.43758 * 16 15 14 45 45 H 0.97001 * 119.99914 * 180.02562 * 21 20 18 46 46 H 1.09004 * 109.59094 * 66.17180 * 26 17 16 47 47 H 1.09001 * 109.59077 * 186.46452 * 26 17 16 48 48 H 1.09002 * 109.49848 * 58.67960 * 27 14 4 49 49 H 1.09002 * 109.52425 * 298.59433 * 27 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4423 0.0006 5 6 4.1785 1.4424 1.1681 6 8 5.3913 1.4428 1.1685 7 6 3.4244 1.4421 2.4728 8 6 4.4183 1.4416 3.6361 9 7 3.6853 1.4407 4.9046 10 6 3.8233 0.5531 5.9070 11 7 2.9855 0.9150 6.8479 12 7 2.3657 1.9700 6.4446 13 7 2.7903 2.2939 5.2732 14 6 4.2381 1.4421 -1.2679 15 6 5.1141 2.6948 -1.3502 16 6 5.8554 2.7068 -2.6908 17 7 6.5894 1.4429 -2.8399 18 6 7.9312 1.4434 -3.1137 19 1 8.5467 0.6133 -2.7998 20 6 8.5002 2.5108 -3.7946 21 7 9.7956 2.7289 -3.7119 22 14 7.4274 3.6380 -4.8282 23 1 6.9907 4.7956 -4.0071 24 1 8.2031 4.1247 -5.9972 25 1 6.2356 2.8894 -5.3021 26 6 5.8565 0.1783 -2.6902 27 6 5.1178 0.1925 -1.3481 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8901 32 1 1.8933 -0.5139 0.8900 33 1 1.6768 1.9563 0.8900 34 1 1.6768 1.9564 -0.8900 35 1 2.7975 2.3318 2.5304 36 1 2.7981 0.5519 2.5302 37 1 5.0450 0.5517 3.5784 38 1 5.0450 2.3317 3.5790 39 1 4.4942 -0.2929 5.9314 40 1 3.5300 1.4416 -2.0965 41 1 5.8372 2.6849 -0.5348 42 1 4.4890 3.5844 -1.2721 43 1 6.5562 3.5413 -2.7134 44 1 5.1374 2.8105 -3.5044 45 1 10.1931 3.4750 -4.1875 46 1 5.1369 0.0747 -3.5023 47 1 6.5579 -0.6557 -2.7147 48 1 4.4938 -0.6976 -1.2669 49 1 5.8426 0.2043 -0.5341 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265341822.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:22 Heat of formation + Delta-G solvation = 85.388789 kcal Electronic energy + Delta-G solvation = -30210.860828 eV Core-core repulsion = 26210.809764 eV Total energy + Delta-G solvation = -4000.051064 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -45.17858 -41.54190 -39.05771 -37.33702 -36.98371 -34.97617 -33.61350 -33.53444 -32.74936 -31.93284 -31.49968 -27.57155 -27.24018 -26.01491 -24.81754 -24.46732 -23.97258 -23.10041 -22.59562 -21.30939 -19.97607 -19.09193 -18.54918 -18.10048 -17.62571 -17.33584 -16.84539 -16.77510 -16.61236 -15.90059 -15.55066 -15.32234 -15.23222 -15.06151 -14.74853 -14.63113 -14.24179 -14.18198 -14.09756 -13.75330 -13.60537 -13.46190 -13.21557 -13.05993 -12.76424 -12.64107 -12.57126 -12.50785 -12.23267 -12.20629 -12.14938 -12.02921 -11.86817 -11.68368 -11.60301 -11.37742 -11.36065 -11.28865 -10.74722 -10.55727 -9.60221 -8.92980 -8.16367 -5.47734 0.27001 0.97829 1.22193 1.29440 1.39981 1.49845 1.60082 1.99134 2.41958 3.04455 3.23266 3.34670 3.38886 3.51728 3.56798 3.84002 3.92046 3.96735 3.98700 4.15097 4.25884 4.26806 4.33274 4.38790 4.42051 4.46560 4.51218 4.57975 4.62241 4.67764 4.70625 4.78306 4.80903 4.81154 4.95430 4.96129 5.05256 5.11867 5.22546 5.23671 5.27662 5.35359 5.44635 5.50832 5.72905 5.86999 6.12374 6.45718 6.92545 7.18966 7.56037 7.63288 8.02638 9.03937 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.014411 B = 0.002964 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.497247 B = 9445.499872 C =10582.427840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.138 4.138 3 C 0.101 3.899 4 N -0.602 5.602 5 C 0.516 3.484 6 O -0.563 6.563 7 C -0.143 4.143 8 C 0.130 3.870 9 N -0.302 5.302 10 C 0.181 3.819 11 N -0.343 5.343 12 N -0.111 5.111 13 N -0.109 5.109 14 C 0.167 3.833 15 C -0.138 4.138 16 C 0.125 3.875 17 N -0.619 5.619 18 C -0.246 4.246 19 H 0.046 0.954 20 C -0.040 4.040 21 N -0.961 5.961 22 Si 0.951 3.049 23 H -0.277 1.277 24 H -0.312 1.312 25 H -0.253 1.253 26 C 0.147 3.853 27 C -0.133 4.133 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.117 0.883 36 H 0.123 0.877 37 H 0.146 0.854 38 H 0.108 0.892 39 H 0.283 0.717 40 H 0.102 0.898 41 H 0.057 0.943 42 H 0.072 0.928 43 H 0.043 0.957 44 H 0.041 0.959 45 H 0.261 0.739 46 H 0.043 0.957 47 H 0.051 0.949 48 H 0.081 0.919 49 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.778 -6.623 12.282 25.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.176 4.176 3 C -0.021 4.021 4 N -0.333 5.333 5 C 0.304 3.696 6 O -0.442 6.442 7 C -0.184 4.184 8 C 0.009 3.991 9 N -0.104 5.104 10 C -0.116 4.116 11 N -0.192 5.192 12 N -0.105 5.105 13 N -0.096 5.096 14 C 0.064 3.936 15 C -0.178 4.178 16 C 0.000 4.000 17 N -0.343 5.343 18 C -0.376 4.376 19 H 0.064 0.936 20 C -0.234 4.234 21 N -0.607 5.607 22 Si 0.780 3.220 23 H -0.204 1.204 24 H -0.241 1.241 25 H -0.177 1.177 26 C 0.022 3.978 27 C -0.173 4.173 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.114 0.886 34 H 0.110 0.890 35 H 0.135 0.865 36 H 0.141 0.859 37 H 0.164 0.836 38 H 0.126 0.874 39 H 0.298 0.702 40 H 0.120 0.880 41 H 0.075 0.925 42 H 0.091 0.909 43 H 0.062 0.938 44 H 0.059 0.941 45 H 0.070 0.930 46 H 0.061 0.939 47 H 0.069 0.931 48 H 0.099 0.901 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -22.042 -5.729 12.797 26.124 hybrid contribution 1.219 0.220 -1.202 1.726 sum -20.823 -5.509 11.595 24.462 Atomic orbital electron populations 1.21685 0.94113 1.02300 1.02495 1.21923 0.96833 0.96307 1.02586 1.22002 0.77122 0.97972 1.04969 1.48182 1.07671 1.72442 1.05024 1.20582 0.87464 0.75756 0.85826 1.90796 1.15415 1.50362 1.87645 1.21887 0.98997 1.07541 0.89943 1.22154 0.92683 1.08705 0.75540 1.48907 1.26586 1.17746 1.17116 1.28657 1.00765 0.98831 0.83387 1.74950 1.09207 1.08962 1.26032 1.78633 1.19985 1.08580 1.03335 1.78812 1.04759 1.15592 1.10415 1.20854 0.93110 0.94193 0.85418 1.22278 0.99149 0.98102 0.98296 1.21337 0.94421 0.88419 0.95836 1.44450 1.05359 1.01721 1.82799 1.18840 0.83613 1.05941 1.29208 0.93643 1.25957 0.96455 1.00512 1.00512 1.69992 1.12763 1.32110 1.45855 0.85837 0.78903 0.79012 0.78263 1.20417 1.24108 1.17729 1.21060 0.94306 0.87212 0.95218 1.22227 0.98989 0.97436 0.98619 0.92110 0.92361 0.92001 0.92021 0.91774 0.88556 0.89034 0.86464 0.85907 0.83590 0.87427 0.70176 0.88018 0.92452 0.90913 0.93836 0.94143 0.93047 0.93875 0.93070 0.90069 0.92496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.91 71.98 0.71 -0.39 16 2 C -0.14 -1.30 6.26 30.59 0.19 -1.10 16 3 C 0.10 1.08 5.18 86.38 0.45 1.53 16 4 N -0.60 -11.12 2.42 -797.61 -1.93 -13.05 16 5 C 0.52 10.28 7.10 87.66 0.62 10.90 16 6 O -0.56 -16.69 12.23 -3.03 -0.04 -16.73 16 7 C -0.14 -1.62 4.40 29.85 0.13 -1.49 16 8 C 0.13 1.44 5.77 86.38 0.50 1.93 16 9 N -0.30 -4.18 3.44 -351.80 -1.21 -5.39 16 10 C 0.18 2.13 12.79 180.27 2.31 4.43 16 11 N -0.34 -7.13 12.36 -60.29 -0.74 -7.88 16 12 N -0.11 -2.73 13.43 37.01 0.50 -2.24 16 13 N -0.11 -2.26 13.08 37.02 0.48 -1.77 16 14 C 0.17 4.28 2.50 45.03 0.11 4.39 16 15 C -0.14 -4.63 5.29 30.68 0.16 -4.46 16 16 C 0.13 5.21 4.20 86.36 0.36 5.57 16 17 N -0.62 -29.02 2.77 -699.09 -1.94 -30.96 16 18 C -0.25 -14.27 10.03 84.03 0.84 -13.42 16 19 H 0.05 2.91 8.06 -2.91 -0.02 2.89 16 20 C -0.04 -2.39 5.23 84.86 0.44 -1.95 16 21 N -0.96 -61.76 13.97 21.65 0.30 -61.46 16 22 Si 0.95 46.71 24.34 68.60 1.67 48.38 16 23 H -0.28 -12.94 6.62 99.48 0.66 -12.28 16 24 H -0.31 -15.61 7.11 99.48 0.71 -14.90 16 25 H -0.25 -11.55 6.64 99.48 0.66 -10.89 16 26 C 0.15 5.45 6.52 86.37 0.56 6.01 16 27 C -0.13 -3.96 5.27 30.67 0.16 -3.80 16 28 H 0.06 0.43 8.14 -2.39 -0.02 0.42 16 29 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 32 H 0.06 0.58 7.22 -2.38 -0.02 0.57 16 33 H 0.10 0.71 6.44 -2.39 -0.02 0.70 16 34 H 0.09 0.88 7.92 -2.39 -0.02 0.86 16 35 H 0.12 1.24 7.40 -2.39 -0.02 1.22 16 36 H 0.12 0.90 7.18 -2.39 -0.02 0.88 16 37 H 0.15 1.04 8.04 -2.39 -0.02 1.02 16 38 H 0.11 1.48 8.10 -2.38 -0.02 1.46 16 39 H 0.28 0.02 8.06 -2.91 -0.02 -0.01 16 40 H 0.10 2.21 7.79 -2.39 -0.02 2.19 16 41 H 0.06 2.31 6.21 -2.39 -0.01 2.29 16 42 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 43 H 0.04 2.07 4.50 -2.39 -0.01 2.06 16 44 H 0.04 1.55 7.07 -2.38 -0.02 1.53 16 45 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 46 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 47 H 0.05 1.99 7.93 -2.39 -0.02 1.97 16 48 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 49 H 0.06 2.08 6.21 -2.39 -0.01 2.06 16 Total: -1.00 -82.42 382.27 5.51 -76.91 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: 0.85 Total: 6.02 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: 7.56 Total: 8.16 kcal Atomic # 7 Polarization: -118.21 SS G_CDS: -4.54 Total: -122.75 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: -0.04 Total: -16.73 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 1.67 Total: 48.38 kcal Total: -82.42 5.51 -76.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265341822.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.301 kcal (2) G-P(sol) polarization free energy of solvation -82.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds