Wall clock time and date at job start Tue Mar 31 2020 20:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52998 * 109.47116 * 2 1 4 4 C 1.52998 * 109.46842 * 240.00105 * 2 1 3 5 5 N 1.46499 * 109.46885 * 120.00191 * 2 1 3 6 6 N 1.28726 * 125.31702 * 240.03933 * 5 2 1 7 7 N 1.28978 * 108.98378 * 179.69219 * 6 5 2 8 8 C 1.34186 * 107.25449 * 0.43470 * 7 6 5 9 9 C 1.48006 * 126.69722 * 179.84163 * 8 7 6 10 10 O 1.21535 * 120.00091 * 187.02979 * 9 8 7 11 11 N 1.34775 * 120.00246 * 7.02161 * 9 8 7 12 12 C 1.46922 * 120.62885 * 6.78161 * 11 9 8 13 13 C 1.53192 * 108.77435 * 126.39326 * 12 11 9 14 14 C 1.53038 * 109.31559 * 54.63220 * 13 12 11 15 15 C 1.53037 * 109.53918 * 298.64104 * 14 13 12 16 16 C 1.46926 * 120.63140 * 186.78391 * 11 9 8 17 17 H 1.09000 * 109.70235 * 113.75189 * 16 11 9 18 18 C 1.52998 * 109.58679 * 353.39637 * 16 11 9 19 19 N 1.46496 * 109.47273 * 68.74770 * 18 16 11 20 20 C 1.36934 * 120.00237 * 174.63681 * 19 18 16 21 21 H 1.08010 * 119.99779 * 0.02562 * 20 19 18 22 22 C 1.38815 * 120.00202 * 179.72525 * 20 19 18 23 23 N 1.31615 * 119.99822 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99970 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47307 * 359.97438 * 24 22 20 26 26 H 1.48488 * 109.47132 * 119.99907 * 24 22 20 27 27 H 1.48504 * 109.46942 * 240.00047 * 24 22 20 28 28 N 1.28867 * 125.32087 * 60.00186 * 5 2 1 29 29 H 1.08993 * 109.46871 * 299.99843 * 1 2 3 30 30 H 1.08997 * 109.46621 * 59.99932 * 1 2 3 31 31 H 1.08998 * 109.46702 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47104 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.46914 * 300.00323 * 3 2 1 34 34 H 1.09004 * 109.46936 * 59.99839 * 3 2 1 35 35 H 1.09006 * 109.47535 * 299.99729 * 4 2 1 36 36 H 1.09007 * 109.47480 * 60.00006 * 4 2 1 37 37 H 1.09005 * 109.46969 * 179.97438 * 4 2 1 38 38 H 1.09003 * 109.59148 * 6.60397 * 12 11 9 39 39 H 1.08999 * 109.70419 * 246.24480 * 12 11 9 40 40 H 1.09003 * 109.49907 * 294.68151 * 13 12 11 41 41 H 1.09005 * 109.49834 * 174.58925 * 13 12 11 42 42 H 1.08996 * 109.46404 * 178.61202 * 14 13 12 43 43 H 1.09004 * 109.44469 * 58.65267 * 14 13 12 44 44 H 1.09003 * 109.49226 * 301.40961 * 15 14 13 45 45 H 1.09001 * 109.52248 * 181.33235 * 15 14 13 46 46 H 1.09005 * 109.46891 * 308.74677 * 18 16 11 47 47 H 1.09000 * 109.47101 * 188.74846 * 18 16 11 48 48 H 0.97006 * 120.00017 * 354.63738 * 19 18 16 49 49 H 0.97001 * 119.99798 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0184 -0.6907 1.1962 6 7 2.7610 -0.1660 2.1074 7 7 2.9974 -1.0499 3.0164 8 6 2.3773 -2.1800 2.6435 9 6 2.3694 -3.4670 3.3743 10 8 1.8739 -4.4525 2.8640 11 7 2.9117 -3.5462 4.6056 12 6 3.3805 -2.3372 5.2962 13 6 2.7201 -2.2707 6.6769 14 6 2.9949 -3.5727 7.4327 15 6 2.3889 -4.7487 6.6634 16 6 3.0455 -4.8433 5.2826 17 1 4.1008 -5.0915 5.3961 18 6 2.3495 -5.9271 4.4568 19 7 3.0950 -6.1494 3.2155 20 6 2.7223 -7.1546 2.3636 21 1 1.8785 -7.7834 2.6068 22 6 3.4252 -7.3616 1.1846 23 7 4.4502 -6.5919 0.8858 24 14 2.9163 -8.7325 0.0222 25 1 1.7431 -9.4484 0.5846 26 1 2.5581 -8.1547 -1.2979 27 1 4.0437 -9.6848 -0.1437 28 7 1.7711 -1.9181 1.5009 29 1 -0.3633 0.5138 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1301 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 -1.7490 -1.2493 36 1 1.6767 -0.2074 -2.1393 37 1 3.1301 -0.7208 -1.2495 38 1 3.1057 -1.4556 4.7169 39 1 4.4637 -2.3760 5.4108 40 1 1.6445 -2.1381 6.5598 41 1 3.1317 -1.4310 7.2370 42 1 2.5470 -3.5183 8.4248 43 1 4.0712 -3.7169 7.5277 44 1 1.3164 -4.5928 6.5464 45 1 2.5642 -5.6731 7.2138 46 1 1.3349 -5.6074 4.2191 47 1 2.3136 -6.8536 5.0299 48 1 3.8527 -5.5844 2.9969 49 1 4.9411 -6.7363 0.0617 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265671083.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:52 Heat of formation + Delta-G solvation = 154.014916 kcal Electronic energy + Delta-G solvation = -31213.176893 eV Core-core repulsion = 27216.101681 eV Total energy + Delta-G solvation = -3997.075211 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -44.16141 -39.98648 -37.72769 -36.85573 -34.49563 -33.41348 -32.72259 -32.10195 -31.51671 -29.74880 -27.90826 -27.80005 -26.38200 -24.98142 -24.48217 -23.86190 -22.59779 -21.41757 -20.72863 -20.39371 -19.16991 -17.33188 -17.16395 -16.85163 -16.28786 -15.49646 -14.90866 -14.61597 -14.58379 -14.48883 -14.29423 -14.12133 -13.61187 -13.53964 -13.29907 -13.12236 -12.87193 -12.83170 -12.69094 -12.64547 -12.24232 -12.15791 -12.12142 -11.91977 -11.77015 -11.60879 -11.36511 -11.02806 -10.86023 -10.81904 -10.74629 -10.70392 -10.67558 -10.26998 -10.11786 -9.90079 -9.79003 -9.50562 -8.80209 -8.53171 -8.04699 -6.52024 -5.55057 -2.74290 1.33773 1.83524 1.85480 3.17248 3.54965 3.60299 3.62826 3.76443 3.98025 4.25492 4.28933 4.36329 4.75815 4.76263 4.96442 5.04698 5.09232 5.10238 5.14018 5.21799 5.28509 5.29899 5.35679 5.41097 5.46884 5.59076 5.62429 5.72729 5.75021 5.80289 5.82801 5.88377 5.94125 5.98145 6.05035 6.11039 6.17207 6.22516 6.30963 6.39492 6.47233 6.57175 6.73917 6.97116 7.31315 7.86793 7.89488 8.44529 8.62542 8.82490 9.73862 10.32771 10.66775 11.68704 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.007990 B = 0.005282 C = 0.003401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3503.702785 B = 5299.587869 C = 8230.221721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.178 3.822 3 C -0.151 4.151 4 C -0.162 4.162 5 N -0.129 5.129 6 N -0.070 5.070 7 N -0.269 5.269 8 C 0.149 3.851 9 C 0.565 3.435 10 O -0.413 6.413 11 N -0.597 5.597 12 C 0.087 3.913 13 C -0.132 4.132 14 C -0.118 4.118 15 C -0.126 4.126 16 C 0.145 3.855 17 H 0.074 0.926 18 C 0.154 3.846 19 N -0.695 5.695 20 C -0.208 4.208 21 H 0.068 0.932 22 C -0.020 4.020 23 N -0.936 5.936 24 Si 0.902 3.098 25 H -0.282 1.282 26 H -0.295 1.295 27 H -0.295 1.295 28 N -0.247 5.247 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.068 0.932 38 H 0.121 0.879 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.070 0.930 42 H 0.060 0.940 43 H 0.063 0.937 44 H 0.066 0.934 45 H 0.074 0.926 46 H 0.043 0.957 47 H 0.021 0.979 48 H 0.380 0.620 49 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.775 18.624 5.187 20.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.098 3.902 3 C -0.209 4.209 4 C -0.220 4.220 5 N -0.044 5.044 6 N -0.062 5.062 7 N -0.144 5.144 8 C -0.135 4.135 9 C 0.344 3.656 10 O -0.275 6.275 11 N -0.335 5.335 12 C -0.037 4.037 13 C -0.170 4.170 14 C -0.156 4.156 15 C -0.165 4.165 16 C 0.043 3.957 17 H 0.092 0.908 18 C 0.027 3.973 19 N -0.338 5.338 20 C -0.340 4.340 21 H 0.086 0.914 22 C -0.215 4.215 23 N -0.586 5.586 24 Si 0.735 3.265 25 H -0.207 1.207 26 H -0.223 1.223 27 H -0.223 1.223 28 N -0.099 5.099 29 H 0.085 0.915 30 H 0.108 0.892 31 H 0.099 0.901 32 H 0.094 0.906 33 H 0.106 0.894 34 H 0.093 0.907 35 H 0.101 0.899 36 H 0.107 0.893 37 H 0.088 0.912 38 H 0.138 0.862 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.085 0.915 45 H 0.093 0.907 46 H 0.061 0.939 47 H 0.038 0.962 48 H 0.213 0.787 49 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -6.065 18.481 4.635 19.995 hybrid contribution 0.121 -0.880 -0.751 1.163 sum -5.944 17.601 3.884 18.979 Atomic orbital electron populations 1.22240 0.90896 1.04847 1.03758 1.21404 0.96149 0.92865 0.79816 1.22078 1.03199 0.91550 1.04055 1.22265 1.02653 1.02416 0.94686 1.50613 1.30080 1.05684 1.18029 1.78763 1.08766 1.23018 0.95685 1.75840 1.20759 0.98889 1.18899 1.25833 0.97973 0.97038 0.92626 1.16312 0.84231 0.83630 0.81442 1.91232 1.38949 1.31047 1.66312 1.47422 1.62671 1.08038 1.15385 1.22337 0.98669 0.89239 0.93443 1.21909 1.01134 0.97732 0.96236 1.21519 1.01049 0.94755 0.98284 1.21906 1.00640 0.98637 0.95334 1.21557 1.00180 0.82500 0.91498 0.90845 1.21007 0.96296 0.92712 0.87290 1.42355 1.34351 1.37555 1.19544 1.19226 1.09825 1.05809 0.99146 0.91433 1.24632 0.98805 0.99751 0.98305 1.69677 1.22388 1.41066 1.25513 0.86152 0.77385 0.81662 0.81330 1.20715 1.22272 1.22276 1.75075 1.21645 0.98079 1.15122 0.91509 0.89230 0.90117 0.90568 0.89370 0.90694 0.89915 0.89284 0.91245 0.86162 0.91875 0.91997 0.91177 0.92125 0.91815 0.91509 0.90730 0.93905 0.96182 0.78673 0.94078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 8.66 37.16 0.32 -1.04 16 2 C 0.18 1.85 1.30 -131.82 -0.17 1.68 16 3 C -0.15 -1.13 7.90 37.16 0.29 -0.83 16 4 C -0.16 -1.64 8.66 37.16 0.32 -1.32 16 5 N -0.13 -1.95 3.72 0.53 0.00 -1.95 16 6 N -0.07 -1.11 12.21 60.35 0.74 -0.37 16 7 N -0.27 -4.68 9.05 32.10 0.29 -4.39 16 8 C 0.15 2.94 7.81 -156.25 -1.22 1.72 16 9 C 0.56 12.04 7.04 -12.26 -0.09 11.96 16 10 O -0.41 -10.50 10.91 5.34 0.06 -10.45 16 11 N -0.60 -10.68 2.97 -166.27 -0.49 -11.18 16 12 C 0.09 1.25 6.12 -3.71 -0.02 1.23 16 13 C -0.13 -1.52 6.08 -26.61 -0.16 -1.69 16 14 C -0.12 -1.32 5.88 -26.69 -0.16 -1.48 16 15 C -0.13 -1.70 5.36 -26.61 -0.14 -1.84 16 16 C 0.15 2.56 2.93 -67.60 -0.20 2.36 16 17 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 18 C 0.15 3.39 4.87 -4.04 -0.02 3.37 16 19 N -0.69 -18.94 3.22 -59.91 -0.19 -19.13 16 20 C -0.21 -6.23 9.72 -15.06 -0.15 -6.38 16 21 H 0.07 1.99 7.83 -52.48 -0.41 1.58 16 22 C -0.02 -0.62 5.50 -17.43 -0.10 -0.72 16 23 N -0.94 -30.17 13.06 55.49 0.72 -29.44 16 24 Si 0.90 23.94 29.55 -169.99 -5.02 18.92 16 25 H -0.28 -7.23 7.11 56.52 0.40 -6.83 16 26 H -0.30 -7.90 7.11 56.52 0.40 -7.50 16 27 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 28 N -0.25 -4.68 11.86 32.11 0.38 -4.30 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.09 0.59 8.14 -51.92 -0.42 0.16 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.12 1.82 4.14 -68.42 -0.28 1.53 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.04 1.02 6.33 -51.93 -0.33 0.69 16 47 H 0.02 0.44 8.13 -51.93 -0.42 0.01 16 48 H 0.38 11.09 7.00 -40.82 -0.29 10.81 16 49 H 0.25 7.78 8.31 -40.82 -0.34 7.44 16 LS Contribution 385.87 15.07 5.81 5.81 Total: -1.00 -36.45 385.87 -7.24 -43.69 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -8.05 Total: 5.76 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: -1.49 Total: 7.02 kcal Atomic # 7 Polarization: -72.21 SS G_CDS: 1.45 Total: -70.76 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.06 Total: -10.45 kcal Atomic # 14 Polarization: 23.94 SS G_CDS: -5.02 Total: 18.92 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.45 -7.24 -43.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265671083.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.710 kcal (2) G-P(sol) polarization free energy of solvation -36.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 161.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 154.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds