Wall clock time and date at job start Tue Mar 31 2020 20:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52998 * 109.47116 * 2 1 4 4 C 1.52998 * 109.46842 * 240.00105 * 2 1 3 5 5 N 1.46499 * 109.46885 * 120.00191 * 2 1 3 6 6 N 1.28726 * 125.31702 * 240.03933 * 5 2 1 7 7 N 1.28978 * 108.98378 * 179.69219 * 6 5 2 8 8 C 1.34186 * 107.25449 * 0.43470 * 7 6 5 9 9 C 1.48006 * 126.69722 * 179.84163 * 8 7 6 10 10 O 1.21535 * 120.00091 * 187.02979 * 9 8 7 11 11 N 1.34775 * 120.00246 * 7.02161 * 9 8 7 12 12 C 1.46922 * 120.62885 * 6.78161 * 11 9 8 13 13 C 1.53192 * 108.77435 * 126.39326 * 12 11 9 14 14 C 1.53038 * 109.31559 * 54.63220 * 13 12 11 15 15 C 1.53037 * 109.53918 * 298.64104 * 14 13 12 16 16 C 1.46926 * 120.63140 * 186.78391 * 11 9 8 17 17 H 1.09000 * 109.70235 * 113.75189 * 16 11 9 18 18 C 1.52998 * 109.58679 * 353.39637 * 16 11 9 19 19 N 1.46496 * 109.47273 * 68.74770 * 18 16 11 20 20 C 1.36934 * 120.00237 * 174.63681 * 19 18 16 21 21 H 1.08010 * 119.99779 * 0.02562 * 20 19 18 22 22 C 1.38815 * 120.00202 * 179.72525 * 20 19 18 23 23 N 1.31615 * 119.99822 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99970 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47307 * 359.97438 * 24 22 20 26 26 H 1.48488 * 109.47132 * 119.99907 * 24 22 20 27 27 H 1.48504 * 109.46942 * 240.00047 * 24 22 20 28 28 N 1.28867 * 125.32087 * 60.00186 * 5 2 1 29 29 H 1.08993 * 109.46871 * 299.99843 * 1 2 3 30 30 H 1.08997 * 109.46621 * 59.99932 * 1 2 3 31 31 H 1.08998 * 109.46702 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47104 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.46914 * 300.00323 * 3 2 1 34 34 H 1.09004 * 109.46936 * 59.99839 * 3 2 1 35 35 H 1.09006 * 109.47535 * 299.99729 * 4 2 1 36 36 H 1.09007 * 109.47480 * 60.00006 * 4 2 1 37 37 H 1.09005 * 109.46969 * 179.97438 * 4 2 1 38 38 H 1.09003 * 109.59148 * 6.60397 * 12 11 9 39 39 H 1.08999 * 109.70419 * 246.24480 * 12 11 9 40 40 H 1.09003 * 109.49907 * 294.68151 * 13 12 11 41 41 H 1.09005 * 109.49834 * 174.58925 * 13 12 11 42 42 H 1.08996 * 109.46404 * 178.61202 * 14 13 12 43 43 H 1.09004 * 109.44469 * 58.65267 * 14 13 12 44 44 H 1.09003 * 109.49226 * 301.40961 * 15 14 13 45 45 H 1.09001 * 109.52248 * 181.33235 * 15 14 13 46 46 H 1.09005 * 109.46891 * 308.74677 * 18 16 11 47 47 H 1.09000 * 109.47101 * 188.74846 * 18 16 11 48 48 H 0.97006 * 120.00017 * 354.63738 * 19 18 16 49 49 H 0.97001 * 119.99798 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0184 -0.6907 1.1962 6 7 2.7610 -0.1660 2.1074 7 7 2.9974 -1.0499 3.0164 8 6 2.3773 -2.1800 2.6435 9 6 2.3694 -3.4670 3.3743 10 8 1.8739 -4.4525 2.8640 11 7 2.9117 -3.5462 4.6056 12 6 3.3805 -2.3372 5.2962 13 6 2.7201 -2.2707 6.6769 14 6 2.9949 -3.5727 7.4327 15 6 2.3889 -4.7487 6.6634 16 6 3.0455 -4.8433 5.2826 17 1 4.1008 -5.0915 5.3961 18 6 2.3495 -5.9271 4.4568 19 7 3.0950 -6.1494 3.2155 20 6 2.7223 -7.1546 2.3636 21 1 1.8785 -7.7834 2.6068 22 6 3.4252 -7.3616 1.1846 23 7 4.4502 -6.5919 0.8858 24 14 2.9163 -8.7325 0.0222 25 1 1.7431 -9.4484 0.5846 26 1 2.5581 -8.1547 -1.2979 27 1 4.0437 -9.6848 -0.1437 28 7 1.7711 -1.9181 1.5009 29 1 -0.3633 0.5138 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1301 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 -1.7490 -1.2493 36 1 1.6767 -0.2074 -2.1393 37 1 3.1301 -0.7208 -1.2495 38 1 3.1057 -1.4556 4.7169 39 1 4.4637 -2.3760 5.4108 40 1 1.6445 -2.1381 6.5598 41 1 3.1317 -1.4310 7.2370 42 1 2.5470 -3.5183 8.4248 43 1 4.0712 -3.7169 7.5277 44 1 1.3164 -4.5928 6.5464 45 1 2.5642 -5.6731 7.2138 46 1 1.3349 -5.6074 4.2191 47 1 2.3136 -6.8536 5.0299 48 1 3.8527 -5.5844 2.9969 49 1 4.9411 -6.7363 0.0617 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265671083.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:51 Heat of formation + Delta-G solvation = 128.694060 kcal Electronic energy + Delta-G solvation = -31214.274888 eV Core-core repulsion = 27216.101681 eV Total energy + Delta-G solvation = -3998.173206 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -45.51415 -41.50191 -38.67501 -38.27636 -36.40668 -34.71312 -34.23555 -33.66637 -32.94304 -31.52038 -28.65636 -28.57187 -27.89402 -26.57153 -25.83855 -25.23431 -24.31419 -22.93459 -21.98295 -21.55353 -20.51922 -19.21615 -18.47465 -18.18399 -17.67288 -16.98507 -16.71728 -16.08671 -15.92023 -15.69909 -15.32704 -15.27367 -15.17537 -15.10999 -14.72636 -14.47916 -14.17931 -14.00244 -13.75697 -13.60766 -13.50107 -13.24645 -13.24204 -13.10835 -12.88060 -12.84611 -12.76687 -12.61652 -12.35567 -12.13768 -12.11807 -12.03251 -11.99003 -11.84922 -11.70023 -11.43045 -11.38673 -11.06161 -10.93474 -10.29937 -9.57908 -8.68418 -7.86887 -5.06693 -0.01983 0.37467 0.74140 1.41672 1.44566 1.54020 1.75426 2.16256 2.59713 2.85821 2.98530 3.46925 3.47489 3.55065 3.63104 3.79665 3.83971 4.03864 4.06599 4.16180 4.29207 4.35858 4.41394 4.42243 4.48318 4.50222 4.56915 4.60733 4.62323 4.70844 4.71220 4.88057 4.95246 4.99507 5.04479 5.07675 5.10115 5.15349 5.17299 5.20898 5.24088 5.29160 5.35470 5.50845 5.54186 5.78858 6.33889 6.36332 7.02990 7.25963 7.40113 8.17842 8.40549 9.38243 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.007990 B = 0.005282 C = 0.003401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3503.702785 B = 5299.587869 C = 8230.221721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.159 3.841 3 C -0.145 4.145 4 C -0.160 4.160 5 N -0.113 5.113 6 N -0.062 5.062 7 N -0.266 5.266 8 C 0.126 3.874 9 C 0.567 3.433 10 O -0.472 6.472 11 N -0.589 5.589 12 C 0.080 3.920 13 C -0.124 4.124 14 C -0.113 4.113 15 C -0.118 4.118 16 C 0.148 3.852 17 H 0.071 0.929 18 C 0.157 3.843 19 N -0.707 5.707 20 C -0.210 4.210 21 H 0.067 0.933 22 C -0.085 4.085 23 N -0.976 5.976 24 Si 0.968 3.032 25 H -0.268 1.268 26 H -0.300 1.300 27 H -0.291 1.291 28 N -0.272 5.272 29 H 0.068 0.932 30 H 0.131 0.869 31 H 0.054 0.946 32 H 0.067 0.933 33 H 0.128 0.872 34 H 0.076 0.924 35 H 0.049 0.951 36 H 0.133 0.867 37 H 0.055 0.945 38 H 0.116 0.884 39 H 0.071 0.929 40 H 0.057 0.943 41 H 0.100 0.900 42 H 0.089 0.911 43 H 0.071 0.929 44 H 0.062 0.938 45 H 0.091 0.909 46 H 0.025 0.975 47 H 0.028 0.972 48 H 0.365 0.635 49 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.427 20.836 6.226 22.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.081 3.919 3 C -0.203 4.203 4 C -0.218 4.218 5 N -0.029 5.029 6 N -0.053 5.053 7 N -0.140 5.140 8 C -0.158 4.158 9 C 0.347 3.653 10 O -0.339 6.339 11 N -0.326 5.326 12 C -0.042 4.042 13 C -0.162 4.162 14 C -0.150 4.150 15 C -0.157 4.157 16 C 0.045 3.955 17 H 0.089 0.911 18 C 0.031 3.969 19 N -0.348 5.348 20 C -0.343 4.343 21 H 0.085 0.915 22 C -0.276 4.276 23 N -0.629 5.629 24 Si 0.799 3.201 25 H -0.192 1.192 26 H -0.228 1.228 27 H -0.218 1.218 28 N -0.125 5.125 29 H 0.087 0.913 30 H 0.149 0.851 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.147 0.853 34 H 0.095 0.905 35 H 0.069 0.931 36 H 0.151 0.849 37 H 0.074 0.926 38 H 0.133 0.867 39 H 0.089 0.911 40 H 0.076 0.924 41 H 0.119 0.881 42 H 0.107 0.893 43 H 0.090 0.910 44 H 0.081 0.919 45 H 0.110 0.890 46 H 0.043 0.957 47 H 0.045 0.955 48 H 0.196 0.804 49 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -6.728 20.723 5.753 22.535 hybrid contribution 0.260 -1.345 -1.081 1.745 sum -6.468 19.379 4.672 20.957 Atomic orbital electron populations 1.22279 0.89250 1.03825 1.05902 1.22171 0.97546 0.94161 0.78052 1.22153 1.02676 0.89289 1.06148 1.22306 1.01808 1.01193 0.96484 1.51208 1.28623 1.04568 1.18542 1.78674 1.08563 1.22481 0.95605 1.75843 1.20604 0.98175 1.19376 1.25609 0.99563 0.97249 0.93352 1.16718 0.82892 0.83596 0.82112 1.91204 1.42097 1.33002 1.67553 1.47635 1.61061 1.09456 1.14442 1.22596 0.99403 0.87330 0.94885 1.21890 1.00695 0.99301 0.94360 1.21520 1.01591 0.92923 0.98973 1.21880 1.00074 1.00942 0.92758 1.21570 0.99910 0.81103 0.92914 0.91094 1.21046 0.95374 0.94514 0.86014 1.42421 1.34484 1.36919 1.20934 1.19565 1.09115 1.05937 0.99673 0.91516 1.25416 0.99385 1.02633 1.00135 1.69849 1.23948 1.43255 1.25853 0.85112 0.77435 0.78886 0.78710 1.19225 1.22793 1.21798 1.75024 1.22245 1.00032 1.15226 0.91313 0.85083 0.92700 0.91425 0.85324 0.90517 0.93140 0.84859 0.92554 0.86719 0.91080 0.92420 0.88144 0.89252 0.91028 0.91899 0.89013 0.95730 0.95459 0.80365 0.94745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 8.66 71.99 0.62 -1.78 16 2 C 0.16 3.10 1.30 3.61 0.00 3.11 16 3 C -0.14 -1.76 7.90 71.98 0.57 -1.19 16 4 C -0.16 -3.12 8.66 71.98 0.62 -2.50 16 5 N -0.11 -3.43 3.72 -152.25 -0.57 -3.99 16 6 N -0.06 -1.92 12.21 37.02 0.45 -1.47 16 7 N -0.27 -9.33 9.05 -52.36 -0.47 -9.80 16 8 C 0.13 5.17 7.81 137.15 1.07 6.24 16 9 C 0.57 25.33 7.04 86.83 0.61 25.94 16 10 O -0.47 -25.47 10.91 -3.83 -0.04 -25.51 16 11 N -0.59 -21.42 2.97 -798.24 -2.37 -23.79 16 12 C 0.08 2.23 6.12 86.36 0.53 2.76 16 13 C -0.12 -2.52 6.08 30.67 0.19 -2.33 16 14 C -0.11 -2.13 5.88 30.62 0.18 -1.95 16 15 C -0.12 -2.95 5.36 30.67 0.16 -2.78 16 16 C 0.15 5.21 2.93 44.97 0.13 5.34 16 17 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 18 C 0.16 7.13 4.87 86.38 0.42 7.55 16 19 N -0.71 -40.30 3.22 -343.45 -1.11 -41.41 16 20 C -0.21 -13.07 9.72 84.03 0.82 -12.26 16 21 H 0.07 4.05 7.83 -2.91 -0.02 4.02 16 22 C -0.09 -5.39 5.50 84.86 0.47 -4.92 16 23 N -0.98 -65.55 13.06 21.65 0.28 -65.26 16 24 Si 0.97 50.84 29.55 68.60 2.03 52.87 16 25 H -0.27 -13.24 7.11 99.48 0.71 -12.54 16 26 H -0.30 -15.85 7.11 99.48 0.71 -15.14 16 27 H -0.29 -14.91 7.11 99.48 0.71 -14.20 16 28 N -0.27 -10.76 11.86 -52.32 -0.62 -11.38 16 29 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.13 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.13 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 35 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 36 H 0.13 1.36 8.14 -2.38 -0.02 1.34 16 37 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 38 H 0.12 3.39 4.14 -23.71 -0.10 3.30 16 39 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.10 1.50 8.14 -2.38 -0.02 1.48 16 42 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 46 H 0.03 1.23 6.33 -2.38 -0.02 1.22 16 47 H 0.03 1.20 8.13 -2.39 -0.02 1.18 16 48 H 0.37 22.48 7.00 -92.70 -0.65 21.83 16 49 H 0.24 15.85 8.31 -92.71 -0.77 15.08 16 Total: -1.00 -85.35 385.87 4.19 -81.16 By element: Atomic # 1 Polarization: 27.16 SS G_CDS: 0.22 Total: 27.37 kcal Atomic # 6 Polarization: 14.83 SS G_CDS: 6.40 Total: 21.22 kcal Atomic # 7 Polarization: -152.70 SS G_CDS: -4.41 Total: -157.11 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: -0.04 Total: -25.51 kcal Atomic # 14 Polarization: 50.84 SS G_CDS: 2.03 Total: 52.87 kcal Total: -85.35 4.19 -81.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265671083.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 209.853 kcal (2) G-P(sol) polarization free energy of solvation -85.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds