Wall clock time and date at job start Tue Mar 31 2020 19:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36602 * 126.58206 * 2 1 4 4 C 1.47518 * 125.76847 * 359.94939 * 3 2 1 5 5 O 1.21597 * 120.00208 * 0.02562 * 4 3 2 6 6 N 1.34771 * 119.99962 * 180.02562 * 4 3 2 7 7 C 1.46506 * 120.00222 * 180.02562 * 6 4 3 8 8 C 1.52993 * 109.47228 * 179.97438 * 7 6 4 9 9 C 1.52999 * 109.47262 * 179.97438 * 8 7 6 10 10 N 1.46898 * 109.47492 * 180.02562 * 9 8 7 11 11 C 1.46900 * 111.00355 * 170.00073 * 10 9 8 12 12 C 1.53235 * 109.34263 * 187.25389 * 11 10 9 13 13 N 1.47086 * 108.51886 * 306.16546 * 12 11 10 14 14 C 1.36930 * 120.88084 * 231.18344 * 13 12 11 15 15 H 1.08003 * 120.00034 * 27.13616 * 14 13 12 16 16 C 1.38810 * 119.99851 * 206.85031 * 14 13 12 17 17 N 1.31624 * 120.00188 * 17.17041 * 16 14 13 18 18 Si 1.86805 * 119.99970 * 197.16526 * 16 14 13 19 19 H 1.48502 * 109.46715 * 90.00616 * 18 16 14 20 20 H 1.48499 * 109.46981 * 210.00183 * 18 16 14 21 21 H 1.48489 * 109.47231 * 330.00643 * 18 16 14 22 22 C 1.47081 * 118.23455 * 51.46100 * 13 12 11 23 23 C 1.46901 * 110.99711 * 294.29927 * 10 9 8 24 24 N 1.34397 * 108.45875 * 180.22119 * 3 2 1 25 25 N 1.28763 * 109.52333 * 359.57936 * 24 3 2 26 26 N 1.34819 * 126.57949 * 179.97438 * 2 1 3 27 27 C 1.46498 * 126.59464 * 0.05630 * 26 2 1 28 28 H 1.09002 * 109.46765 * 90.00310 * 1 2 3 29 29 H 1.09002 * 109.47447 * 210.00147 * 1 2 3 30 30 H 1.08996 * 109.47076 * 330.00610 * 1 2 3 31 31 H 0.96998 * 120.00169 * 359.97438 * 6 4 3 32 32 H 1.09001 * 109.46707 * 59.99460 * 7 6 4 33 33 H 1.08995 * 109.46757 * 299.99968 * 7 6 4 34 34 H 1.08998 * 109.47190 * 59.99550 * 8 7 6 35 35 H 1.09005 * 109.47347 * 299.99547 * 8 7 6 36 36 H 1.09006 * 109.47130 * 59.99442 * 9 8 7 37 37 H 1.09008 * 109.47089 * 300.00122 * 9 8 7 38 38 H 1.09002 * 109.49350 * 67.29049 * 11 10 9 39 39 H 1.09006 * 109.50970 * 307.22448 * 11 10 9 40 40 H 1.08998 * 109.62971 * 186.46211 * 12 11 10 41 41 H 1.09001 * 109.62881 * 65.87432 * 12 11 10 42 42 H 0.96996 * 120.00064 * 179.97438 * 17 16 14 43 43 H 1.09000 * 109.63185 * 68.25003 * 22 13 12 44 44 H 1.08998 * 109.62646 * 188.83355 * 22 13 12 45 45 H 1.09000 * 109.49497 * 292.70822 * 23 10 9 46 46 H 1.08999 * 109.49178 * 52.78806 * 23 10 9 47 47 H 1.08996 * 109.46809 * 90.00264 * 27 26 2 48 48 H 1.09002 * 109.47114 * 209.99864 * 27 26 2 49 49 H 1.08996 * 109.47251 * 330.00102 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3211 1.0969 0.0000 4 6 1.8738 2.5027 -0.0011 5 8 0.6860 2.7628 -0.0016 6 7 2.7817 3.4987 -0.0015 7 6 2.3376 4.8948 -0.0019 8 6 3.5575 5.8181 -0.0017 9 6 3.0937 7.2761 -0.0028 10 7 4.2650 8.1626 -0.0032 11 6 3.8698 9.5571 -0.2424 12 6 5.1256 10.4179 -0.4156 13 7 5.9988 10.2102 0.7497 14 6 6.4917 11.2740 1.4571 15 1 5.9475 12.2065 1.4793 16 6 7.6881 11.1518 2.1504 17 7 8.5128 10.1648 1.8712 18 14 8.1276 12.3885 3.4798 19 1 7.6084 11.9144 4.7879 20 1 9.6038 12.5304 3.5553 21 1 7.5199 13.7034 3.1531 22 6 6.3332 8.8297 1.1313 23 6 5.0251 8.0312 1.2470 24 7 3.5984 0.6789 -0.0049 25 7 3.6299 -0.6084 0.0009 26 7 2.3104 -1.0826 0.0005 27 6 1.8863 -2.4849 0.0000 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5137 31 1 3.7293 3.2912 -0.0007 32 1 1.7378 5.0855 0.8880 33 1 1.7378 5.0849 -0.8919 34 1 4.1577 5.6274 -0.8913 35 1 4.1570 5.6279 0.8886 36 1 2.4932 7.4670 0.8866 37 1 2.4944 7.4660 -0.8934 38 1 3.2927 9.9224 0.6070 39 1 3.2627 9.6135 -1.1460 40 1 4.8433 11.4688 -0.4788 41 1 5.6504 10.1215 -1.3238 42 1 9.3490 10.0797 2.3554 43 1 6.9719 8.3835 0.3689 44 1 6.8496 8.8300 2.0912 45 1 4.4318 8.4177 2.0757 46 1 5.2561 6.9807 1.4235 47 1 1.7820 -2.8325 -1.0278 48 1 2.6327 -3.0904 0.5143 49 1 0.9289 -2.5752 0.5130 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266260195.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:56 Heat of formation + Delta-G solvation = 88.399787 kcal Electronic energy + Delta-G solvation = -28320.516876 eV Core-core repulsion = 24320.596379 eV Total energy + Delta-G solvation = -3999.920497 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.63109 -39.57319 -38.19795 -35.84993 -35.33835 -34.29638 -32.74092 -32.01100 -30.53012 -29.85041 -28.62855 -27.93205 -26.76404 -24.76818 -23.45850 -22.80766 -22.32179 -21.39550 -21.11660 -20.42045 -19.05394 -18.23434 -16.87624 -16.80948 -16.38570 -16.06391 -15.77879 -15.12661 -14.72943 -14.62006 -14.54390 -14.16217 -14.10911 -13.79921 -13.69880 -13.61355 -13.50506 -13.37489 -12.99992 -12.97131 -12.89162 -12.30890 -12.08619 -11.79595 -11.55287 -11.50355 -11.25919 -11.01306 -10.82496 -10.70803 -10.63876 -10.38683 -10.27537 -10.22445 -9.99282 -9.69275 -9.57711 -9.53087 -9.15983 -8.46929 -7.77416 -6.62484 -5.74453 -3.15709 0.72646 1.39354 1.60116 2.93895 3.04743 3.40306 3.47046 3.48366 3.79814 3.90638 4.13809 4.33364 4.38273 4.41153 4.53597 4.66178 4.83679 4.98713 4.98958 5.11287 5.22413 5.25204 5.33112 5.42123 5.48243 5.52581 5.56210 5.68822 5.77082 5.94546 5.96203 5.99701 6.11998 6.20427 6.21157 6.30399 6.32912 6.40333 6.60024 6.73906 6.97824 7.24508 7.30013 7.61500 7.66044 7.69714 7.75396 7.86302 7.97370 8.47508 9.25110 9.88596 10.47459 11.34215 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.022312 B = 0.001766 C = 0.001681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.636179 B =15848.183632 C =16652.095279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.123 3.877 3 C -0.107 4.107 4 C 0.606 3.394 5 O -0.540 6.540 6 N -0.712 5.712 7 C 0.122 3.878 8 C -0.130 4.130 9 C 0.059 3.941 10 N -0.533 5.533 11 C 0.045 3.955 12 C 0.148 3.852 13 N -0.596 5.596 14 C -0.251 4.251 15 H 0.066 0.934 16 C 0.001 3.999 17 N -0.903 5.903 18 Si 0.902 3.098 19 H -0.288 1.288 20 H -0.291 1.291 21 H -0.279 1.279 22 C 0.178 3.822 23 C 0.032 3.968 24 N -0.200 5.200 25 N -0.066 5.066 26 N -0.366 5.366 27 C 0.087 3.913 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.113 0.887 31 H 0.410 0.590 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.029 0.971 37 H 0.070 0.930 38 H 0.027 0.973 39 H 0.061 0.939 40 H 0.055 0.945 41 H 0.025 0.975 42 H 0.254 0.746 43 H 0.027 0.973 44 H 0.087 0.913 45 H 0.024 0.976 46 H 0.062 0.938 47 H 0.090 0.910 48 H 0.102 0.898 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.890 -25.236 -4.626 31.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.015 4.015 3 C -0.247 4.247 4 C 0.390 3.610 5 O -0.417 6.417 6 N -0.362 5.362 7 C -0.001 4.001 8 C -0.168 4.168 9 C -0.070 4.070 10 N -0.258 5.258 11 C -0.084 4.084 12 C 0.021 3.979 13 N -0.319 5.319 14 C -0.381 4.381 15 H 0.083 0.917 16 C -0.198 4.198 17 N -0.548 5.548 18 Si 0.732 3.268 19 H -0.215 1.215 20 H -0.218 1.218 21 H -0.205 1.205 22 C 0.052 3.948 23 C -0.097 4.097 24 N -0.074 5.074 25 N -0.046 5.046 26 N -0.152 5.152 27 C -0.055 4.055 28 H 0.111 0.889 29 H 0.094 0.906 30 H 0.131 0.869 31 H 0.246 0.754 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.047 0.953 37 H 0.088 0.912 38 H 0.045 0.955 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.043 0.957 42 H 0.064 0.936 43 H 0.045 0.955 44 H 0.106 0.894 45 H 0.042 0.958 46 H 0.081 0.919 47 H 0.108 0.892 48 H 0.120 0.880 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -16.767 -25.602 -4.937 31.000 hybrid contribution -0.686 0.662 1.365 1.665 sum -17.453 -24.940 -3.571 30.649 Atomic orbital electron populations 1.20733 0.84559 1.05436 1.04722 1.21941 0.96280 0.86341 0.96913 1.21212 0.89072 0.95445 1.18939 1.16676 0.85532 0.82483 0.76321 1.90764 1.15899 1.83666 1.51384 1.45805 1.10424 1.06051 1.73950 1.21399 0.97350 0.78885 1.02499 1.21810 0.96905 0.94130 1.03927 1.21933 0.92783 0.91904 1.00342 1.61942 1.20870 1.06641 1.36345 1.22606 0.98656 0.88273 0.98886 1.20983 0.89886 0.96121 0.90866 1.44142 1.56007 1.02289 1.29459 1.19207 1.01521 0.93232 1.24121 0.91669 1.25027 0.95169 0.98319 1.01267 1.70031 1.09874 1.33316 1.41571 0.86286 0.77234 0.80951 0.82288 1.21540 1.21762 1.20487 1.20961 0.90268 0.82657 1.00935 1.23036 0.97999 0.99928 0.88721 1.74616 1.18990 1.04214 1.09549 1.82031 0.95881 1.03385 1.23296 1.50303 1.06499 1.07830 1.50519 1.22184 1.02495 0.75978 1.04800 0.88916 0.90650 0.86896 0.75425 0.91299 0.91117 0.90220 0.90861 0.95325 0.91185 0.95486 0.92053 0.92663 0.95669 0.93636 0.95528 0.89445 0.95769 0.91934 0.89153 0.87959 0.88482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.51 9.57 36.00 0.34 -0.17 16 2 C 0.12 1.05 7.02 -81.87 -0.57 0.48 16 3 C -0.11 -1.21 6.99 -83.55 -0.58 -1.79 16 4 C 0.61 7.33 7.82 -12.48 -0.10 7.24 16 5 O -0.54 -7.33 14.72 5.28 0.08 -7.25 16 6 N -0.71 -7.93 5.55 -61.36 -0.34 -8.27 16 7 C 0.12 1.34 5.67 -4.04 -0.02 1.31 16 8 C -0.13 -1.54 5.26 -26.73 -0.14 -1.68 16 9 C 0.06 0.82 4.96 -3.83 -0.02 0.80 16 10 N -0.53 -9.46 4.63 -234.02 -1.08 -10.54 16 11 C 0.05 0.82 5.62 -3.70 -0.02 0.80 16 12 C 0.15 3.21 6.69 -3.60 -0.02 3.18 16 13 N -0.60 -15.34 3.03 -171.73 -0.52 -15.86 16 14 C -0.25 -7.02 9.63 -15.06 -0.15 -7.16 16 15 H 0.07 1.79 7.88 -52.48 -0.41 1.37 16 16 C 0.00 0.02 4.93 -17.43 -0.09 -0.07 16 17 N -0.90 -26.56 11.16 55.49 0.62 -25.94 16 18 Si 0.90 21.96 29.59 -169.99 -5.03 16.93 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 22 C 0.18 4.36 5.45 -3.36 -0.02 4.34 16 23 C 0.03 0.63 5.48 -3.46 -0.02 0.61 16 24 N -0.20 -2.46 12.04 32.85 0.40 -2.06 16 25 N -0.07 -0.74 13.78 60.35 0.83 0.09 16 26 N -0.37 -2.81 4.03 -63.59 -0.26 -3.07 16 27 C 0.09 0.20 11.33 59.85 0.68 0.87 16 28 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.18 7.18 -51.93 -0.37 -0.20 16 30 H 0.11 0.81 6.43 -51.93 -0.33 0.47 16 31 H 0.41 4.28 8.16 -40.82 -0.33 3.95 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.07 0.92 6.40 -51.93 -0.33 0.58 16 36 H 0.03 0.40 8.13 -51.93 -0.42 -0.02 16 37 H 0.07 0.88 7.97 -51.92 -0.41 0.46 16 38 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.95 7.99 -51.93 -0.41 0.54 16 40 H 0.05 1.15 7.95 -51.93 -0.41 0.73 16 41 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 43 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.09 2.37 6.12 -51.93 -0.32 2.05 16 45 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 46 H 0.06 1.10 6.16 -51.93 -0.32 0.78 16 47 H 0.09 0.08 8.14 -51.93 -0.42 -0.35 16 48 H 0.10 0.15 8.14 -51.93 -0.42 -0.27 16 49 H 0.10 -0.02 7.16 -51.93 -0.37 -0.39 16 LS Contribution 393.54 15.07 5.93 5.93 Total: -1.00 -34.56 393.54 -7.93 -42.48 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -7.82 Total: -1.20 kcal Atomic # 6 Polarization: 9.49 SS G_CDS: -0.73 Total: 8.76 kcal Atomic # 7 Polarization: -65.30 SS G_CDS: -0.35 Total: -65.66 kcal Atomic # 8 Polarization: -7.33 SS G_CDS: 0.08 Total: -7.25 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.93 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.56 -7.93 -42.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266260195.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.884 kcal (2) G-P(sol) polarization free energy of solvation -34.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds