Wall clock time and date at job start Tue Mar 31 2020 19:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36602 * 126.58206 * 2 1 4 4 C 1.47518 * 125.76847 * 359.94939 * 3 2 1 5 5 O 1.21597 * 120.00208 * 0.02562 * 4 3 2 6 6 N 1.34771 * 119.99962 * 180.02562 * 4 3 2 7 7 C 1.46506 * 120.00222 * 180.02562 * 6 4 3 8 8 C 1.52993 * 109.47228 * 179.97438 * 7 6 4 9 9 C 1.52999 * 109.47262 * 179.97438 * 8 7 6 10 10 N 1.46898 * 109.47492 * 180.02562 * 9 8 7 11 11 C 1.46900 * 111.00355 * 170.00073 * 10 9 8 12 12 C 1.53235 * 109.34263 * 187.25389 * 11 10 9 13 13 N 1.47086 * 108.51886 * 306.16546 * 12 11 10 14 14 C 1.36930 * 120.88084 * 231.18344 * 13 12 11 15 15 H 1.08003 * 120.00034 * 27.13616 * 14 13 12 16 16 C 1.38810 * 119.99851 * 206.85031 * 14 13 12 17 17 N 1.31624 * 120.00188 * 17.17041 * 16 14 13 18 18 Si 1.86805 * 119.99970 * 197.16526 * 16 14 13 19 19 H 1.48502 * 109.46715 * 90.00616 * 18 16 14 20 20 H 1.48499 * 109.46981 * 210.00183 * 18 16 14 21 21 H 1.48489 * 109.47231 * 330.00643 * 18 16 14 22 22 C 1.47081 * 118.23455 * 51.46100 * 13 12 11 23 23 C 1.46901 * 110.99711 * 294.29927 * 10 9 8 24 24 N 1.34397 * 108.45875 * 180.22119 * 3 2 1 25 25 N 1.28763 * 109.52333 * 359.57936 * 24 3 2 26 26 N 1.34819 * 126.57949 * 179.97438 * 2 1 3 27 27 C 1.46498 * 126.59464 * 0.05630 * 26 2 1 28 28 H 1.09002 * 109.46765 * 90.00310 * 1 2 3 29 29 H 1.09002 * 109.47447 * 210.00147 * 1 2 3 30 30 H 1.08996 * 109.47076 * 330.00610 * 1 2 3 31 31 H 0.96998 * 120.00169 * 359.97438 * 6 4 3 32 32 H 1.09001 * 109.46707 * 59.99460 * 7 6 4 33 33 H 1.08995 * 109.46757 * 299.99968 * 7 6 4 34 34 H 1.08998 * 109.47190 * 59.99550 * 8 7 6 35 35 H 1.09005 * 109.47347 * 299.99547 * 8 7 6 36 36 H 1.09006 * 109.47130 * 59.99442 * 9 8 7 37 37 H 1.09008 * 109.47089 * 300.00122 * 9 8 7 38 38 H 1.09002 * 109.49350 * 67.29049 * 11 10 9 39 39 H 1.09006 * 109.50970 * 307.22448 * 11 10 9 40 40 H 1.08998 * 109.62971 * 186.46211 * 12 11 10 41 41 H 1.09001 * 109.62881 * 65.87432 * 12 11 10 42 42 H 0.96996 * 120.00064 * 179.97438 * 17 16 14 43 43 H 1.09000 * 109.63185 * 68.25003 * 22 13 12 44 44 H 1.08998 * 109.62646 * 188.83355 * 22 13 12 45 45 H 1.09000 * 109.49497 * 292.70822 * 23 10 9 46 46 H 1.08999 * 109.49178 * 52.78806 * 23 10 9 47 47 H 1.08996 * 109.46809 * 90.00264 * 27 26 2 48 48 H 1.09002 * 109.47114 * 209.99864 * 27 26 2 49 49 H 1.08996 * 109.47251 * 330.00102 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3211 1.0969 0.0000 4 6 1.8738 2.5027 -0.0011 5 8 0.6860 2.7628 -0.0016 6 7 2.7817 3.4987 -0.0015 7 6 2.3376 4.8948 -0.0019 8 6 3.5575 5.8181 -0.0017 9 6 3.0937 7.2761 -0.0028 10 7 4.2650 8.1626 -0.0032 11 6 3.8698 9.5571 -0.2424 12 6 5.1256 10.4179 -0.4156 13 7 5.9988 10.2102 0.7497 14 6 6.4917 11.2740 1.4571 15 1 5.9475 12.2065 1.4793 16 6 7.6881 11.1518 2.1504 17 7 8.5128 10.1648 1.8712 18 14 8.1276 12.3885 3.4798 19 1 7.6084 11.9144 4.7879 20 1 9.6038 12.5304 3.5553 21 1 7.5199 13.7034 3.1531 22 6 6.3332 8.8297 1.1313 23 6 5.0251 8.0312 1.2470 24 7 3.5984 0.6789 -0.0049 25 7 3.6299 -0.6084 0.0009 26 7 2.3104 -1.0826 0.0005 27 6 1.8863 -2.4849 0.0000 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5137 31 1 3.7293 3.2912 -0.0007 32 1 1.7378 5.0855 0.8880 33 1 1.7378 5.0849 -0.8919 34 1 4.1577 5.6274 -0.8913 35 1 4.1570 5.6279 0.8886 36 1 2.4932 7.4670 0.8866 37 1 2.4944 7.4660 -0.8934 38 1 3.2927 9.9224 0.6070 39 1 3.2627 9.6135 -1.1460 40 1 4.8433 11.4688 -0.4788 41 1 5.6504 10.1215 -1.3238 42 1 9.3490 10.0797 2.3554 43 1 6.9719 8.3835 0.3689 44 1 6.8496 8.8300 2.0912 45 1 4.4318 8.4177 2.0757 46 1 5.2561 6.9807 1.4235 47 1 1.7820 -2.8325 -1.0278 48 1 2.6327 -3.0904 0.5143 49 1 0.9289 -2.5752 0.5130 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266260195.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:54 Heat of formation + Delta-G solvation = 61.940972 kcal Electronic energy + Delta-G solvation = -28321.664217 eV Core-core repulsion = 24320.596379 eV Total energy + Delta-G solvation = -4001.067837 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -43.32026 -40.48771 -39.71474 -37.06246 -36.07096 -35.66899 -33.66648 -33.31465 -31.97556 -31.58971 -29.36699 -28.34846 -28.27662 -26.11187 -24.74618 -24.29507 -23.72625 -22.20527 -22.01121 -21.32353 -20.79758 -18.99556 -18.71838 -17.50348 -17.34243 -16.88304 -16.81179 -16.67368 -16.13989 -15.83828 -15.39600 -15.28499 -15.22312 -15.21756 -15.10579 -14.64256 -14.48473 -14.22798 -14.09888 -13.97036 -13.35952 -13.30707 -13.25792 -12.98364 -12.93534 -12.79055 -12.62589 -12.52508 -12.29290 -12.20860 -12.05734 -11.94490 -11.75523 -11.47381 -11.33587 -11.19274 -11.11087 -10.58338 -10.36174 -9.99929 -9.23422 -8.67109 -7.87107 -5.32072 0.09361 0.56341 1.12028 1.46395 1.47660 1.56828 2.09290 2.18934 2.50881 3.02454 3.16577 3.27873 3.44018 3.60629 3.70244 3.74249 3.97185 4.07295 4.19655 4.29994 4.35684 4.38517 4.42396 4.50837 4.58958 4.64289 4.66185 4.66535 4.67404 4.69025 4.71889 4.82498 4.86958 4.91314 5.05099 5.06039 5.17666 5.23212 5.27434 5.38593 5.40471 5.51557 5.61607 5.69618 6.21180 6.32093 6.38063 6.38706 6.85970 7.09722 7.13695 7.84743 8.39113 9.19483 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.022312 B = 0.001766 C = 0.001681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.636179 B =15848.183632 C =16652.095279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.132 3.868 3 C -0.136 4.136 4 C 0.604 3.396 5 O -0.559 6.559 6 N -0.711 5.711 7 C 0.131 3.869 8 C -0.118 4.118 9 C 0.062 3.938 10 N -0.543 5.543 11 C 0.056 3.944 12 C 0.142 3.858 13 N -0.615 5.615 14 C -0.264 4.264 15 H 0.068 0.932 16 C -0.053 4.053 17 N -0.936 5.936 18 Si 0.969 3.031 19 H -0.286 1.286 20 H -0.294 1.294 21 H -0.268 1.268 22 C 0.184 3.816 23 C 0.050 3.950 24 N -0.226 5.226 25 N -0.097 5.097 26 N -0.354 5.354 27 C 0.071 3.929 28 H 0.106 0.894 29 H 0.112 0.888 30 H 0.095 0.905 31 H 0.413 0.587 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.033 0.967 37 H 0.091 0.909 38 H 0.023 0.977 39 H 0.096 0.904 40 H 0.060 0.940 41 H 0.016 0.984 42 H 0.250 0.750 43 H -0.001 1.001 44 H 0.055 0.945 45 H 0.017 0.983 46 H 0.083 0.917 47 H 0.109 0.891 48 H 0.109 0.891 49 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.502 -26.618 -4.824 33.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.008 4.008 3 C -0.276 4.276 4 C 0.389 3.611 5 O -0.438 6.438 6 N -0.361 5.361 7 C 0.008 3.992 8 C -0.156 4.156 9 C -0.066 4.066 10 N -0.268 5.268 11 C -0.074 4.074 12 C 0.017 3.983 13 N -0.339 5.339 14 C -0.394 4.394 15 H 0.085 0.915 16 C -0.248 4.248 17 N -0.582 5.582 18 Si 0.797 3.203 19 H -0.213 1.213 20 H -0.221 1.221 21 H -0.193 1.193 22 C 0.058 3.942 23 C -0.079 4.079 24 N -0.098 5.098 25 N -0.076 5.076 26 N -0.139 5.139 27 C -0.067 4.067 28 H 0.124 0.876 29 H 0.130 0.870 30 H 0.113 0.887 31 H 0.248 0.752 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.052 0.948 37 H 0.109 0.891 38 H 0.041 0.959 39 H 0.115 0.885 40 H 0.079 0.921 41 H 0.034 0.966 42 H 0.059 0.941 43 H 0.017 0.983 44 H 0.073 0.927 45 H 0.035 0.965 46 H 0.101 0.899 47 H 0.127 0.873 48 H 0.128 0.872 49 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -19.394 -27.011 -5.154 33.650 hybrid contribution 0.067 0.999 1.350 1.681 sum -19.327 -26.013 -3.804 32.629 Atomic orbital electron populations 1.20843 0.82101 1.06341 1.05759 1.22403 0.97532 0.85758 0.95101 1.21327 0.89541 0.95789 1.20946 1.16826 0.85329 0.83008 0.75891 1.90743 1.16474 1.84072 1.52472 1.45813 1.10547 1.06092 1.73670 1.21283 0.96702 0.78586 1.02671 1.21667 0.97128 0.93331 1.03508 1.22006 0.91337 0.91702 1.01583 1.61879 1.22863 1.07113 1.34898 1.22460 0.96752 0.87785 1.00365 1.21154 0.90674 0.97482 0.89028 1.44433 1.56486 1.02185 1.30795 1.19550 1.01576 0.93924 1.24364 0.91474 1.25812 0.95227 1.00379 1.03377 1.70193 1.10159 1.35208 1.42640 0.85239 0.76510 0.79149 0.79391 1.21254 1.22107 1.19258 1.20727 0.92238 0.83069 0.98148 1.22686 0.95672 0.99984 0.89582 1.74570 1.19885 1.04923 1.10464 1.81918 0.98028 1.03126 1.24542 1.50635 1.05231 1.09460 1.48595 1.22729 1.04174 0.73155 1.06666 0.87601 0.86976 0.88682 0.75156 0.91416 0.90608 0.90382 0.91552 0.94830 0.89069 0.95879 0.88534 0.92143 0.96613 0.94079 0.98329 0.92688 0.96515 0.89929 0.87270 0.87225 0.85294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.75 9.57 71.23 0.68 -0.06 16 2 C 0.13 2.05 7.02 41.72 0.29 2.34 16 3 C -0.14 -3.02 6.99 40.82 0.29 -2.74 16 4 C 0.60 14.43 7.82 86.69 0.68 15.11 16 5 O -0.56 -14.81 14.72 -4.02 -0.06 -14.87 16 6 N -0.71 -15.51 5.55 -466.29 -2.59 -18.10 16 7 C 0.13 2.68 5.67 86.38 0.49 3.17 16 8 C -0.12 -2.62 5.26 30.59 0.16 -2.46 16 9 C 0.06 1.55 4.96 86.30 0.43 1.98 16 10 N -0.54 -18.41 4.63 -894.29 -4.14 -22.55 16 11 C 0.06 1.91 5.62 86.38 0.49 2.39 16 12 C 0.14 6.11 6.69 86.35 0.58 6.69 16 13 N -0.61 -32.21 3.03 -697.23 -2.11 -34.32 16 14 C -0.26 -14.96 9.63 84.03 0.81 -14.15 16 15 H 0.07 3.69 7.88 -2.91 -0.02 3.67 16 16 C -0.05 -3.02 4.93 84.86 0.42 -2.60 16 17 N -0.94 -56.79 11.16 21.65 0.24 -56.54 16 18 Si 0.97 45.81 29.59 68.60 2.03 47.84 16 19 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 20 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 21 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 22 C 0.18 9.31 5.45 86.50 0.47 9.78 16 23 C 0.05 1.96 5.48 86.54 0.47 2.43 16 24 N -0.23 -5.60 12.04 -50.00 -0.60 -6.20 16 25 N -0.10 -2.14 13.78 37.02 0.51 -1.63 16 26 N -0.35 -4.84 4.03 -355.10 -1.43 -6.27 16 27 C 0.07 0.11 11.33 127.77 1.45 1.56 16 28 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.11 0.06 7.18 -2.39 -0.02 0.04 16 30 H 0.09 1.21 6.43 -2.39 -0.02 1.20 16 31 H 0.41 8.62 8.16 -92.71 -0.76 7.86 16 32 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.07 1.58 6.40 -2.38 -0.02 1.56 16 36 H 0.03 0.84 8.13 -2.38 -0.02 0.82 16 37 H 0.09 1.96 7.97 -2.38 -0.02 1.94 16 38 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.10 2.67 7.99 -2.38 -0.02 2.65 16 40 H 0.06 2.48 7.95 -2.39 -0.02 2.46 16 41 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 43 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 44 H 0.05 3.11 6.12 -2.39 -0.01 3.09 16 45 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 46 H 0.08 2.87 6.16 -2.39 -0.01 2.86 16 47 H 0.11 -0.17 8.14 -2.39 -0.02 -0.19 16 48 H 0.11 0.06 8.14 -2.39 -0.02 0.04 16 49 H 0.13 -0.59 7.16 -2.39 -0.02 -0.61 16 Total: -1.00 -77.53 393.54 -0.25 -77.78 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: 0.21 Total: 11.43 kcal Atomic # 6 Polarization: 15.74 SS G_CDS: 7.70 Total: 23.44 kcal Atomic # 7 Polarization: -135.50 SS G_CDS: -10.12 Total: -145.62 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: -0.06 Total: -14.87 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -77.53 -0.25 -77.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266260195.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.717 kcal (2) G-P(sol) polarization free energy of solvation -77.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds