Wall clock time and date at job start Tue Mar 31 2020 20:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.46635 * 2 1 4 4 N 1.46502 * 109.46964 * 180.02562 * 3 2 1 5 5 C 1.36942 * 120.00326 * 270.00305 * 4 3 2 6 6 H 1.07994 * 119.99621 * 38.12975 * 5 4 3 7 7 C 1.38816 * 119.99728 * 218.13239 * 5 4 3 8 8 N 1.31610 * 120.00450 * 21.28387 * 7 5 4 9 9 Si 1.86800 * 119.99486 * 201.28428 * 7 5 4 10 10 H 1.48509 * 109.47222 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47055 * 119.99691 * 9 7 5 12 12 H 1.48500 * 109.47029 * 240.00111 * 9 7 5 13 13 C 1.46499 * 119.99856 * 90.00566 * 4 3 2 14 14 C 1.53009 * 109.46762 * 264.49868 * 13 4 3 15 15 N 1.46499 * 109.46762 * 179.97438 * 14 13 4 16 16 C 1.34777 * 119.99732 * 180.02562 * 15 14 13 17 17 O 1.21281 * 120.00226 * 359.97438 * 16 15 14 18 18 C 1.50703 * 120.00015 * 180.02562 * 16 15 14 19 19 H 1.08998 * 107.91500 * 63.38889 * 18 16 15 20 20 C 1.51010 * 108.05075 * 306.80771 * 18 16 15 21 21 C 1.53660 * 110.87627 * 166.13080 * 20 18 16 22 22 C 1.51809 * 106.95915 * 79.01247 * 21 20 18 23 23 N 1.30315 * 127.91853 * 114.44816 * 22 21 20 24 24 N 1.29261 * 107.46098 * 179.97438 * 23 22 21 25 25 N 1.29145 * 109.43888 * 0.02562 * 24 23 22 26 26 N 1.28402 * 108.35388 * 359.97438 * 25 24 23 27 27 C 1.47656 * 127.74362 * 180.02562 * 26 25 24 28 28 C 1.50879 * 108.05415 * 179.97438 * 18 16 15 29 29 H 1.08998 * 109.47819 * 59.99938 * 1 2 3 30 30 H 1.09010 * 109.47012 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47149 * 299.99354 * 1 2 3 32 32 H 1.08996 * 109.47149 * 240.00645 * 2 1 3 33 33 H 1.08992 * 109.47159 * 120.00140 * 2 1 3 34 34 H 1.09006 * 109.47286 * 60.00765 * 3 2 1 35 35 H 1.08997 * 109.47894 * 300.00125 * 3 2 1 36 36 H 0.97001 * 120.00153 * 179.97438 * 8 7 5 37 37 H 1.09003 * 109.47335 * 144.50346 * 13 4 3 38 38 H 1.08998 * 109.47529 * 24.49902 * 13 4 3 39 39 H 1.09003 * 109.46805 * 60.00153 * 14 13 4 40 40 H 1.08999 * 109.47299 * 299.99755 * 14 13 4 41 41 H 0.96997 * 120.00522 * 359.97438 * 15 14 13 42 42 H 1.09001 * 109.20340 * 286.48593 * 20 18 16 43 43 H 1.09005 * 109.19563 * 45.81643 * 20 18 16 44 44 H 1.09006 * 109.94315 * 319.65831 * 21 20 18 45 45 H 1.09000 * 109.96912 * 198.38627 * 21 20 18 46 46 H 1.08998 * 109.91887 * 5.13780 * 27 26 25 47 47 H 1.08997 * 109.91463 * 126.24095 * 27 26 25 48 48 H 1.09010 * 109.13084 * 73.82770 * 28 18 16 49 49 H 1.08994 * 109.08461 * 314.69256 * 28 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1901 1.4424 1.1850 6 1 3.8234 0.8647 2.0205 7 6 5.3561 2.1848 1.3128 8 7 5.5891 3.1902 0.4961 9 14 6.5946 1.7566 2.6441 10 1 6.1010 0.5930 3.4237 11 1 7.8969 1.4154 2.0174 12 1 6.7706 2.9207 3.5492 13 6 4.2368 1.4429 -1.2697 14 6 4.6115 0.0071 -1.6427 15 7 5.3429 0.0074 -2.9120 16 6 5.7760 -1.1544 -3.4404 17 8 5.5606 -2.2000 -2.8649 18 6 6.5289 -1.1541 -4.7459 19 1 7.4576 -0.6032 -4.5972 20 6 5.7003 -0.4072 -5.7638 21 6 6.5365 -0.0669 -7.0071 22 6 6.6147 -1.3289 -7.8473 23 7 6.1132 -1.5343 -9.0324 24 7 6.4146 -2.7432 -9.3768 25 7 7.0948 -3.3024 -8.4321 26 7 7.2336 -2.4548 -7.4776 27 6 7.9378 -2.6463 -6.1941 28 6 6.8815 -2.5819 -5.0826 29 1 -0.3635 0.5138 -0.8899 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.6766 1.9563 0.8901 35 1 1.6765 1.9564 -0.8899 36 1 6.4037 3.7091 0.5857 37 1 5.1431 2.0397 -1.1663 38 1 3.6083 1.8692 -2.0515 39 1 3.7052 -0.5897 -1.7460 40 1 5.2400 -0.4192 -0.8608 41 1 5.5148 0.8435 -3.3726 42 1 4.8532 -1.0259 -6.0601 43 1 5.3309 0.5160 -5.3173 44 1 7.5377 0.2437 -6.7082 45 1 6.0532 0.7285 -7.5745 46 1 8.4301 -3.6187 -6.1820 47 1 8.6746 -1.8554 -6.0532 48 1 5.9833 -3.1032 -5.4137 49 1 7.2708 -3.0727 -4.1906 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267318388.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:06 Heat of formation + Delta-G solvation = 86.162141 kcal Electronic energy + Delta-G solvation = -29602.728681 eV Core-core repulsion = 25602.711152 eV Total energy + Delta-G solvation = -4000.017529 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -44.56428 -40.22016 -37.53612 -36.53599 -35.28977 -34.41363 -32.99554 -32.85991 -31.69778 -30.84686 -28.69956 -27.26622 -25.64314 -25.33021 -23.92228 -23.60862 -22.08764 -21.43374 -21.01001 -20.35373 -19.85426 -18.16270 -17.52775 -17.05083 -16.58502 -15.97647 -15.66597 -15.38778 -14.99483 -14.58337 -14.43815 -14.35637 -14.16555 -13.76742 -13.68233 -13.35988 -13.05017 -12.89324 -12.84651 -12.59771 -12.39343 -12.25761 -12.10538 -11.68620 -11.60405 -11.57390 -11.32839 -11.26420 -11.23179 -11.07312 -11.02718 -10.82419 -10.51892 -10.43013 -10.28651 -10.15899 -9.98328 -9.84038 -9.58677 -8.69342 -8.58226 -6.70719 -5.91201 -3.52443 1.04826 1.70463 2.01159 2.69810 3.22023 3.28064 3.36097 3.40154 3.53117 3.85026 4.02550 4.15464 4.30272 4.38503 4.54615 4.56949 4.61531 4.80050 4.92344 5.06739 5.12657 5.18591 5.30023 5.34693 5.38988 5.43562 5.49997 5.59608 5.64599 5.68855 5.71356 5.93588 5.94077 6.02336 6.11608 6.21828 6.33558 6.45640 6.54471 6.58579 6.71865 6.89274 6.91667 7.09220 7.43589 7.72304 7.73704 8.36107 8.38678 8.40333 9.05632 9.67112 10.25085 11.07141 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.013920 B = 0.002654 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.024861 B =10545.830330 C =11513.033887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.145 4.145 3 C 0.147 3.853 4 N -0.580 5.580 5 C -0.260 4.260 6 H 0.062 0.938 7 C 0.014 3.986 8 N -0.886 5.886 9 Si 0.895 3.105 10 H -0.275 1.275 11 H -0.288 1.288 12 H -0.289 1.289 13 C 0.135 3.865 14 C 0.098 3.902 15 N -0.717 5.717 16 C 0.508 3.492 17 O -0.545 6.545 18 C -0.115 4.115 19 H 0.102 0.898 20 C -0.116 4.116 21 C -0.035 4.035 22 C 0.182 3.818 23 N -0.302 5.302 24 N -0.086 5.086 25 N -0.094 5.094 26 N -0.302 5.302 27 C 0.115 3.885 28 C -0.121 4.121 29 H 0.047 0.953 30 H 0.043 0.957 31 H 0.049 0.951 32 H 0.051 0.949 33 H 0.057 0.943 34 H 0.049 0.951 35 H 0.032 0.968 36 H 0.254 0.746 37 H 0.098 0.902 38 H 0.029 0.971 39 H 0.052 0.948 40 H 0.066 0.934 41 H 0.397 0.603 42 H 0.077 0.923 43 H 0.096 0.904 44 H 0.101 0.899 45 H 0.116 0.884 46 H 0.121 0.879 47 H 0.113 0.887 48 H 0.081 0.919 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.898 -4.800 -12.353 13.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.185 4.185 3 C 0.021 3.979 4 N -0.299 5.299 5 C -0.390 4.390 6 H 0.079 0.921 7 C -0.186 4.186 8 N -0.528 5.528 9 Si 0.724 3.276 10 H -0.200 1.200 11 H -0.214 1.214 12 H -0.215 1.215 13 C 0.008 3.992 14 C -0.027 4.027 15 N -0.367 5.367 16 C 0.293 3.707 17 O -0.422 6.422 18 C -0.137 4.137 19 H 0.120 0.880 20 C -0.155 4.155 21 C -0.076 4.076 22 C -0.097 4.097 23 N -0.151 5.151 24 N -0.080 5.080 25 N -0.080 5.080 26 N -0.105 5.105 27 C -0.005 4.005 28 C -0.160 4.160 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.050 0.950 36 H 0.064 0.936 37 H 0.115 0.885 38 H 0.048 0.952 39 H 0.070 0.930 40 H 0.084 0.916 41 H 0.231 0.769 42 H 0.096 0.904 43 H 0.114 0.886 44 H 0.119 0.881 45 H 0.134 0.866 46 H 0.140 0.860 47 H 0.131 0.869 48 H 0.100 0.900 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 3.596 -6.200 -13.044 14.883 hybrid contribution 1.083 0.471 1.310 1.764 sum 4.679 -5.728 -11.734 13.871 Atomic orbital electron populations 1.21724 0.97277 1.00437 1.01063 1.22192 0.93896 1.00944 1.01452 1.20958 0.85000 0.92874 0.99055 1.43611 0.99440 1.85064 1.01818 1.19057 1.05987 1.22619 0.91329 0.92065 1.25184 1.00848 0.94633 0.97947 1.69976 1.25958 1.17105 1.39810 0.86351 0.81433 0.78158 0.81614 1.19964 1.21422 1.21540 1.21076 0.99582 0.91682 0.86881 1.22463 0.94957 1.02532 0.82793 1.46173 1.56972 1.08376 1.25191 1.20372 0.79785 0.84308 0.86260 1.90708 1.57337 1.31491 1.62708 1.20765 1.00753 0.97708 0.94438 0.87957 1.21435 0.98428 1.01896 0.93746 1.20747 1.03006 0.90048 0.93762 1.26036 0.96416 0.92997 0.94206 1.74965 1.20771 1.09811 1.09551 1.78863 1.10412 1.00576 1.18109 1.78856 1.16828 1.17872 0.94448 1.48691 1.36507 1.09204 1.16096 1.22878 0.95039 1.06492 0.76125 1.21528 0.99302 0.96462 0.98666 0.93433 0.93807 0.93151 0.93073 0.92396 0.93227 0.94954 0.93569 0.88470 0.95219 0.92953 0.91608 0.76893 0.90444 0.88568 0.88082 0.86586 0.86044 0.86877 0.90005 0.86798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.91 37.16 0.37 -1.71 16 2 C -0.14 -2.52 6.26 -26.73 -0.17 -2.68 16 3 C 0.15 2.91 5.71 -4.04 -0.02 2.88 16 4 N -0.58 -13.20 2.43 -173.23 -0.42 -13.62 16 5 C -0.26 -6.64 9.42 -15.06 -0.14 -6.78 16 6 H 0.06 1.60 7.92 -52.49 -0.42 1.18 16 7 C 0.01 0.37 5.00 -17.43 -0.09 0.28 16 8 N -0.89 -23.41 11.43 55.49 0.63 -22.77 16 9 Si 0.90 20.45 29.60 -169.99 -5.03 15.41 16 10 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 13 C 0.14 2.74 5.50 -4.04 -0.02 2.72 16 14 C 0.10 1.79 5.97 -4.04 -0.02 1.76 16 15 N -0.72 -9.84 5.29 -60.29 -0.32 -10.15 16 16 C 0.51 6.69 7.12 -10.98 -0.08 6.61 16 17 O -0.54 -9.56 15.54 5.56 0.09 -9.47 16 18 C -0.12 -0.90 1.98 -93.84 -0.19 -1.09 16 19 H 0.10 0.54 7.68 -51.93 -0.40 0.14 16 20 C -0.12 -0.78 4.89 -27.39 -0.13 -0.92 16 21 C -0.04 -0.20 6.00 -26.99 -0.16 -0.36 16 22 C 0.18 1.75 7.11 -156.73 -1.11 0.64 16 23 N -0.30 -3.94 12.37 32.63 0.40 -3.53 16 24 N -0.09 -1.23 13.45 60.31 0.81 -0.42 16 25 N -0.09 -1.18 13.36 60.35 0.81 -0.38 16 26 N -0.30 -2.84 3.36 -57.32 -0.19 -3.03 16 27 C 0.11 0.64 6.72 -3.17 -0.02 0.62 16 28 C -0.12 -0.93 4.47 -27.55 -0.12 -1.05 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.04 0.57 8.14 -51.92 -0.42 0.14 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.91 6.65 -51.93 -0.35 0.56 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.05 1.01 8.04 -51.93 -0.42 0.60 16 35 H 0.03 0.60 7.86 -51.93 -0.41 0.19 16 36 H 0.25 6.48 8.31 -40.82 -0.34 6.14 16 37 H 0.10 2.23 5.53 -51.93 -0.29 1.94 16 38 H 0.03 0.55 7.83 -51.93 -0.41 0.15 16 39 H 0.05 1.00 6.65 -51.93 -0.35 0.66 16 40 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 41 H 0.40 4.31 7.25 -40.82 -0.30 4.01 16 42 H 0.08 0.67 7.92 -51.93 -0.41 0.26 16 43 H 0.10 0.55 6.60 -51.93 -0.34 0.21 16 44 H 0.10 0.32 7.89 -51.93 -0.41 -0.09 16 45 H 0.12 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.12 0.52 8.14 -51.93 -0.42 0.09 16 47 H 0.11 0.31 7.88 -51.93 -0.41 -0.10 16 48 H 0.08 0.81 8.08 -51.92 -0.42 0.39 16 49 H 0.11 0.94 7.41 -51.93 -0.38 0.56 16 LS Contribution 390.71 15.07 5.89 5.89 Total: -1.00 -33.14 390.71 -7.04 -40.18 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -7.79 Total: 0.98 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: -1.92 Total: 0.92 kcal Atomic # 7 Polarization: -55.63 SS G_CDS: 1.72 Total: -53.91 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.09 Total: -9.47 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.03 Total: 15.41 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.14 -7.04 -40.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267318388.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.342 kcal (2) G-P(sol) polarization free energy of solvation -33.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds