Wall clock time and date at job start Tue Mar 31 2020 20:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.46635 * 2 1 4 4 N 1.46502 * 109.46964 * 180.02562 * 3 2 1 5 5 C 1.36942 * 120.00326 * 270.00305 * 4 3 2 6 6 H 1.07994 * 119.99621 * 38.12975 * 5 4 3 7 7 C 1.38816 * 119.99728 * 218.13239 * 5 4 3 8 8 N 1.31610 * 120.00450 * 21.28387 * 7 5 4 9 9 Si 1.86800 * 119.99486 * 201.28428 * 7 5 4 10 10 H 1.48509 * 109.47222 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47055 * 119.99691 * 9 7 5 12 12 H 1.48500 * 109.47029 * 240.00111 * 9 7 5 13 13 C 1.46499 * 119.99856 * 90.00566 * 4 3 2 14 14 C 1.53009 * 109.46762 * 264.49868 * 13 4 3 15 15 N 1.46499 * 109.46762 * 179.97438 * 14 13 4 16 16 C 1.34777 * 119.99732 * 180.02562 * 15 14 13 17 17 O 1.21281 * 120.00226 * 359.97438 * 16 15 14 18 18 C 1.50703 * 120.00015 * 180.02562 * 16 15 14 19 19 H 1.08998 * 107.91500 * 63.38889 * 18 16 15 20 20 C 1.51010 * 108.05075 * 306.80771 * 18 16 15 21 21 C 1.53660 * 110.87627 * 166.13080 * 20 18 16 22 22 C 1.51809 * 106.95915 * 79.01247 * 21 20 18 23 23 N 1.30315 * 127.91853 * 114.44816 * 22 21 20 24 24 N 1.29261 * 107.46098 * 179.97438 * 23 22 21 25 25 N 1.29145 * 109.43888 * 0.02562 * 24 23 22 26 26 N 1.28402 * 108.35388 * 359.97438 * 25 24 23 27 27 C 1.47656 * 127.74362 * 180.02562 * 26 25 24 28 28 C 1.50879 * 108.05415 * 179.97438 * 18 16 15 29 29 H 1.08998 * 109.47819 * 59.99938 * 1 2 3 30 30 H 1.09010 * 109.47012 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47149 * 299.99354 * 1 2 3 32 32 H 1.08996 * 109.47149 * 240.00645 * 2 1 3 33 33 H 1.08992 * 109.47159 * 120.00140 * 2 1 3 34 34 H 1.09006 * 109.47286 * 60.00765 * 3 2 1 35 35 H 1.08997 * 109.47894 * 300.00125 * 3 2 1 36 36 H 0.97001 * 120.00153 * 179.97438 * 8 7 5 37 37 H 1.09003 * 109.47335 * 144.50346 * 13 4 3 38 38 H 1.08998 * 109.47529 * 24.49902 * 13 4 3 39 39 H 1.09003 * 109.46805 * 60.00153 * 14 13 4 40 40 H 1.08999 * 109.47299 * 299.99755 * 14 13 4 41 41 H 0.96997 * 120.00522 * 359.97438 * 15 14 13 42 42 H 1.09001 * 109.20340 * 286.48593 * 20 18 16 43 43 H 1.09005 * 109.19563 * 45.81643 * 20 18 16 44 44 H 1.09006 * 109.94315 * 319.65831 * 21 20 18 45 45 H 1.09000 * 109.96912 * 198.38627 * 21 20 18 46 46 H 1.08998 * 109.91887 * 5.13780 * 27 26 25 47 47 H 1.08997 * 109.91463 * 126.24095 * 27 26 25 48 48 H 1.09010 * 109.13084 * 73.82770 * 28 18 16 49 49 H 1.08994 * 109.08461 * 314.69256 * 28 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1901 1.4424 1.1850 6 1 3.8234 0.8647 2.0205 7 6 5.3561 2.1848 1.3128 8 7 5.5891 3.1902 0.4961 9 14 6.5946 1.7566 2.6441 10 1 6.1010 0.5930 3.4237 11 1 7.8969 1.4154 2.0174 12 1 6.7706 2.9207 3.5492 13 6 4.2368 1.4429 -1.2697 14 6 4.6115 0.0071 -1.6427 15 7 5.3429 0.0074 -2.9120 16 6 5.7760 -1.1544 -3.4404 17 8 5.5606 -2.2000 -2.8649 18 6 6.5289 -1.1541 -4.7459 19 1 7.4576 -0.6032 -4.5972 20 6 5.7003 -0.4072 -5.7638 21 6 6.5365 -0.0669 -7.0071 22 6 6.6147 -1.3289 -7.8473 23 7 6.1132 -1.5343 -9.0324 24 7 6.4146 -2.7432 -9.3768 25 7 7.0948 -3.3024 -8.4321 26 7 7.2336 -2.4548 -7.4776 27 6 7.9378 -2.6463 -6.1941 28 6 6.8815 -2.5819 -5.0826 29 1 -0.3635 0.5138 -0.8899 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.6766 1.9563 0.8901 35 1 1.6765 1.9564 -0.8899 36 1 6.4037 3.7091 0.5857 37 1 5.1431 2.0397 -1.1663 38 1 3.6083 1.8692 -2.0515 39 1 3.7052 -0.5897 -1.7460 40 1 5.2400 -0.4192 -0.8608 41 1 5.5148 0.8435 -3.3726 42 1 4.8532 -1.0259 -6.0601 43 1 5.3309 0.5160 -5.3173 44 1 7.5377 0.2437 -6.7082 45 1 6.0532 0.7285 -7.5745 46 1 8.4301 -3.6187 -6.1820 47 1 8.6746 -1.8554 -6.0532 48 1 5.9833 -3.1032 -5.4137 49 1 7.2708 -3.0727 -4.1906 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267318388.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:05 Heat of formation + Delta-G solvation = 63.838039 kcal Electronic energy + Delta-G solvation = -29603.696727 eV Core-core repulsion = 25602.711152 eV Total energy + Delta-G solvation = -4000.985574 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -45.36786 -41.23302 -38.52358 -38.00960 -36.07255 -35.67870 -34.60215 -33.68234 -32.65463 -32.27024 -30.00380 -28.15742 -27.33733 -26.04574 -25.13049 -24.67973 -23.08754 -22.47974 -22.06157 -21.83424 -20.92099 -18.97420 -18.65971 -18.18841 -17.77243 -17.02913 -16.96843 -16.50983 -16.26807 -15.94164 -15.67022 -15.31947 -15.15902 -14.88244 -14.67101 -14.58240 -14.28986 -14.07266 -13.86008 -13.59467 -13.34664 -13.09395 -13.04767 -12.94489 -12.87899 -12.81703 -12.65454 -12.49603 -12.34689 -12.19355 -12.04157 -11.98317 -11.89912 -11.86309 -11.77401 -11.64990 -11.34067 -11.11008 -10.72898 -10.53507 -9.98111 -8.56716 -7.82497 -5.48020 0.27577 1.09207 1.15660 1.43090 1.48659 1.57384 1.65623 2.18288 2.51444 2.94115 3.22030 3.26807 3.39828 3.45178 3.70221 3.79190 3.95137 4.02917 4.12694 4.19738 4.21380 4.32552 4.37875 4.38758 4.42462 4.45271 4.58681 4.68288 4.74134 4.76372 4.81816 4.83125 4.87008 4.93545 5.00183 5.06588 5.10817 5.17434 5.24206 5.27529 5.31453 5.42977 5.47472 5.61305 5.67946 5.79855 6.46920 6.64757 7.17039 7.31678 7.53772 7.84346 8.36504 9.11058 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.013920 B = 0.002654 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.024861 B =10545.830330 C =11513.033887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.134 4.134 3 C 0.146 3.854 4 N -0.598 5.598 5 C -0.270 4.270 6 H 0.047 0.953 7 C -0.023 4.023 8 N -0.906 5.906 9 Si 0.947 3.053 10 H -0.278 1.278 11 H -0.285 1.285 12 H -0.289 1.289 13 C 0.143 3.857 14 C 0.121 3.879 15 N -0.710 5.710 16 C 0.505 3.495 17 O -0.593 6.593 18 C -0.101 4.101 19 H 0.146 0.854 20 C -0.111 4.111 21 C -0.027 4.027 22 C 0.188 3.812 23 N -0.335 5.335 24 N -0.122 5.122 25 N -0.110 5.110 26 N -0.296 5.296 27 C 0.114 3.886 28 C -0.116 4.116 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.045 0.955 33 H 0.036 0.964 34 H 0.037 0.963 35 H 0.047 0.953 36 H 0.255 0.745 37 H 0.076 0.924 38 H 0.048 0.952 39 H 0.041 0.959 40 H 0.028 0.972 41 H 0.414 0.586 42 H 0.053 0.947 43 H 0.112 0.888 44 H 0.142 0.858 45 H 0.130 0.870 46 H 0.136 0.864 47 H 0.157 0.843 48 H 0.052 0.948 49 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.023 -3.802 -13.021 14.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.174 4.174 3 C 0.020 3.980 4 N -0.318 5.318 5 C -0.400 4.400 6 H 0.064 0.936 7 C -0.222 4.222 8 N -0.549 5.549 9 Si 0.775 3.225 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.215 1.215 13 C 0.016 3.984 14 C -0.006 4.006 15 N -0.362 5.362 16 C 0.293 3.707 17 O -0.474 6.474 18 C -0.122 4.122 19 H 0.163 0.837 20 C -0.150 4.150 21 C -0.067 4.067 22 C -0.090 4.090 23 N -0.184 5.184 24 N -0.116 5.116 25 N -0.097 5.097 26 N -0.100 5.100 27 C -0.004 4.004 28 C -0.155 4.155 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.094 0.906 38 H 0.067 0.933 39 H 0.059 0.941 40 H 0.046 0.954 41 H 0.252 0.748 42 H 0.071 0.929 43 H 0.131 0.869 44 H 0.160 0.840 45 H 0.148 0.852 46 H 0.154 0.846 47 H 0.175 0.825 48 H 0.071 0.929 49 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 4.720 -5.192 -13.737 15.425 hybrid contribution 0.678 0.143 1.583 1.728 sum 5.398 -5.049 -12.155 14.225 Atomic orbital electron populations 1.21661 0.94394 1.01696 1.02027 1.22015 0.96325 0.98889 1.00138 1.21050 0.83545 0.94305 0.99097 1.43850 1.00744 1.85382 1.01857 1.19119 1.06631 1.22162 0.92106 0.93580 1.25685 1.01983 0.94740 0.99775 1.70050 1.26269 1.17672 1.40941 0.85555 0.79661 0.77580 0.79681 1.20260 1.21158 1.21532 1.20971 0.98738 0.92276 0.86458 1.21834 0.94157 1.00649 0.83968 1.45981 1.56656 1.09806 1.23733 1.21343 0.78921 0.82978 0.87500 1.90694 1.59042 1.33169 1.64462 1.20825 1.01702 0.98571 0.91137 0.83656 1.21400 0.97708 1.01913 0.93998 1.21021 1.05165 0.88297 0.92233 1.26726 0.94827 0.93999 0.93493 1.74870 1.22135 1.09730 1.11659 1.78824 1.11820 1.01498 1.19427 1.78762 1.17031 1.18758 0.95120 1.48965 1.36083 1.08638 1.16295 1.23245 0.94495 1.09240 0.73418 1.21430 0.98838 0.96031 0.99158 0.92022 0.92426 0.92638 0.93584 0.94505 0.94486 0.93453 0.93600 0.90600 0.93349 0.94051 0.95393 0.74837 0.92854 0.86938 0.84029 0.85199 0.84636 0.82521 0.92947 0.87340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.72 9.91 71.98 0.71 -3.01 16 2 C -0.13 -4.61 6.26 30.59 0.19 -4.42 16 3 C 0.15 5.70 5.71 86.38 0.49 6.20 16 4 N -0.60 -27.44 2.43 -701.98 -1.71 -29.15 16 5 C -0.27 -14.00 9.42 84.03 0.79 -13.21 16 6 H 0.05 2.48 7.92 -2.91 -0.02 2.46 16 7 C -0.02 -1.21 5.00 84.86 0.42 -0.78 16 8 N -0.91 -47.77 11.43 21.65 0.25 -47.52 16 9 Si 0.95 42.22 29.60 68.60 2.03 44.25 16 10 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 11 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 12 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 13 C 0.14 5.74 5.50 86.38 0.47 6.21 16 14 C 0.12 4.44 5.97 86.38 0.52 4.96 16 15 N -0.71 -18.49 5.29 -463.04 -2.45 -20.94 16 16 C 0.51 12.62 7.12 87.66 0.62 13.25 16 17 O -0.59 -20.95 15.54 -3.03 -0.05 -21.00 16 18 C -0.10 -1.27 1.98 -12.88 -0.03 -1.29 16 19 H 0.15 0.69 7.68 -2.39 -0.02 0.67 16 20 C -0.11 -1.14 4.89 30.17 0.15 -1.00 16 21 C -0.03 -0.19 6.00 30.42 0.18 -0.01 16 22 C 0.19 3.19 7.11 139.13 0.99 4.18 16 23 N -0.33 -8.49 12.37 -50.67 -0.63 -9.12 16 24 N -0.12 -3.51 13.45 36.91 0.50 -3.02 16 25 N -0.11 -2.70 13.36 37.02 0.49 -2.20 16 26 N -0.30 -4.96 3.36 -335.28 -1.13 -6.09 16 27 C 0.11 0.89 6.72 86.32 0.58 1.47 16 28 C -0.12 -1.55 4.47 30.06 0.13 -1.42 16 29 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 31 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.05 1.62 6.65 -2.39 -0.02 1.60 16 33 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.04 1.52 8.04 -2.38 -0.02 1.50 16 35 H 0.05 1.70 7.86 -2.39 -0.02 1.68 16 36 H 0.25 12.89 8.31 -92.71 -0.77 12.12 16 37 H 0.08 3.46 5.53 -2.39 -0.01 3.44 16 38 H 0.05 1.74 7.83 -2.39 -0.02 1.72 16 39 H 0.04 1.61 6.65 -2.39 -0.02 1.59 16 40 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.41 7.88 7.25 -92.71 -0.67 7.21 16 42 H 0.05 0.84 7.92 -2.39 -0.02 0.82 16 43 H 0.11 0.85 6.60 -2.38 -0.02 0.83 16 44 H 0.14 -0.06 7.89 -2.38 -0.02 -0.08 16 45 H 0.13 0.68 8.14 -2.39 -0.02 0.66 16 46 H 0.14 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.16 -0.06 7.88 -2.39 -0.02 -0.08 16 48 H 0.05 1.03 8.08 -2.38 -0.02 1.01 16 49 H 0.11 1.64 7.41 -2.39 -0.02 1.63 16 Total: -1.00 -76.73 390.71 3.84 -72.90 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: 0.29 Total: 10.76 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: 6.24 Total: 11.13 kcal Atomic # 7 Polarization: -113.36 SS G_CDS: -4.67 Total: -118.04 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: -0.05 Total: -21.00 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Total: -76.73 3.84 -72.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267318388.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.733 kcal (2) G-P(sol) polarization free energy of solvation -76.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds