Wall clock time and date at job start Tue Mar 31 2020 20:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.46923 * 2 1 4 4 C 1.52997 * 109.47189 * 240.00243 * 2 1 3 5 5 N 1.46494 * 109.47458 * 120.00072 * 2 1 3 6 6 N 1.28724 * 125.31864 * 359.97240 * 5 2 1 7 7 N 1.28978 * 108.98556 * 180.02562 * 6 5 2 8 8 C 1.34189 * 107.25460 * 0.02562 * 7 6 5 9 9 C 1.48004 * 126.69572 * 179.97438 * 8 7 6 10 10 O 1.21541 * 119.99912 * 180.02562 * 9 8 7 11 11 N 1.34772 * 120.00467 * 0.02562 * 9 8 7 12 12 C 1.46503 * 120.00228 * 184.98102 * 11 9 8 13 13 C 1.52999 * 109.47053 * 295.81276 * 12 11 9 14 14 C 1.52997 * 109.46913 * 55.81352 * 12 11 9 15 15 N 1.46497 * 109.47395 * 59.99862 * 14 12 11 16 16 C 1.36937 * 120.00105 * 179.97438 * 15 14 12 17 17 H 1.08001 * 119.99897 * 0.02562 * 16 15 14 18 18 C 1.38812 * 119.99884 * 179.97438 * 16 15 14 19 19 N 1.31618 * 119.99755 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 120.00211 * 0.02562 * 18 16 15 21 21 H 1.48504 * 109.47423 * 89.99520 * 20 18 16 22 22 H 1.48493 * 109.47472 * 209.99533 * 20 18 16 23 23 H 1.48503 * 109.47285 * 329.99719 * 20 18 16 24 24 C 1.53000 * 109.47070 * 175.81083 * 12 11 9 25 25 C 1.53003 * 117.49514 * 132.73242 * 24 12 11 26 26 C 1.53008 * 117.49871 * 64.07871 * 24 12 11 27 27 N 1.28870 * 125.32209 * 180.29041 * 5 2 1 28 28 H 1.09004 * 109.47089 * 299.99576 * 1 2 3 29 29 H 1.09000 * 109.47821 * 60.00149 * 1 2 3 30 30 H 1.09007 * 109.47138 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47102 * 180.02562 * 3 2 1 32 32 H 1.09006 * 109.46920 * 300.00095 * 3 2 1 33 33 H 1.08997 * 109.47294 * 59.99735 * 3 2 1 34 34 H 1.09002 * 109.47026 * 299.99735 * 4 2 1 35 35 H 1.09006 * 109.47310 * 59.99503 * 4 2 1 36 36 H 1.08996 * 109.47557 * 179.97438 * 4 2 1 37 37 H 0.96999 * 119.99779 * 4.98228 * 11 9 8 38 38 H 1.09005 * 109.47199 * 59.99810 * 13 12 11 39 39 H 1.09003 * 109.47090 * 179.97438 * 13 12 11 40 40 H 1.08994 * 109.47161 * 299.99713 * 13 12 11 41 41 H 1.09003 * 109.47026 * 180.02562 * 14 12 11 42 42 H 1.09002 * 109.47171 * 299.99480 * 14 12 11 43 43 H 0.97001 * 119.99617 * 0.02562 * 15 14 12 44 44 H 0.97007 * 120.00131 * 180.02562 * 19 18 16 45 45 H 1.08996 * 115.55422 * 278.40664 * 24 12 11 46 46 H 1.08997 * 117.49944 * 0.02562 * 25 24 12 47 47 H 1.09002 * 117.49719 * 145.02015 * 25 24 12 48 48 H 1.08998 * 117.49406 * 214.98158 * 26 24 12 49 49 H 1.09000 * 117.49643 * 359.97438 * 26 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 2.0184 -0.6906 1.1961 6 7 1.2762 -1.2160 2.1072 7 7 2.0308 -1.7387 3.0132 8 6 3.3030 -1.5250 2.6436 9 6 4.5190 -1.9460 3.3747 10 8 5.6183 -1.6862 2.9260 11 7 4.4075 -2.6173 4.5380 12 6 5.6064 -2.9384 5.3163 13 6 6.4938 -3.8934 4.5155 14 6 6.3801 -1.6527 5.6148 15 7 5.5304 -0.7382 6.3816 16 6 6.0128 0.4843 6.7663 17 1 7.0195 0.7745 6.5041 18 6 5.2075 1.3510 7.4924 19 7 5.6709 2.5262 7.8617 20 14 3.4661 0.8494 7.9453 21 1 3.4764 0.1553 9.2582 22 1 2.6091 2.0589 8.0317 23 1 2.9282 -0.0652 6.9063 24 6 5.1973 -3.6044 6.6316 25 6 5.9402 -4.8783 7.0393 26 6 4.4929 -4.9601 6.5479 27 7 3.2581 -0.8619 1.5035 28 1 -0.3633 0.5138 0.8901 29 1 -0.3635 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.1299 1.4426 -0.0005 32 1 1.6765 1.9564 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.6767 -1.7489 -1.2493 35 1 1.6766 -0.2074 -2.1393 36 1 3.1299 -0.7208 -1.2495 37 1 3.5334 -2.8880 4.8598 38 1 6.7852 -3.4189 3.5784 39 1 7.3860 -4.1319 5.0944 40 1 5.9426 -4.8094 4.3029 41 1 7.2724 -1.8916 6.1935 42 1 6.6716 -1.1782 4.6778 43 1 4.6264 -0.9990 6.6174 44 1 5.1083 3.1317 8.3695 45 1 4.8890 -2.9253 7.4265 46 1 6.7206 -5.2416 6.3708 47 1 6.1204 -5.0374 8.1025 48 1 3.7214 -5.1728 7.2879 49 1 4.3205 -5.3772 5.5557 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269619299.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:55 Heat of formation + Delta-G solvation = 140.545437 kcal Electronic energy + Delta-G solvation = -30604.524250 eV Core-core repulsion = 26606.864958 eV Total energy + Delta-G solvation = -3997.659292 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -44.42076 -40.20674 -38.09884 -37.65927 -34.83330 -33.80557 -33.37285 -32.56995 -31.25370 -30.00243 -28.04443 -27.96847 -26.21315 -25.37121 -24.51479 -23.51639 -22.29742 -21.82879 -20.99896 -20.58819 -18.97293 -18.05924 -17.62453 -17.40473 -16.96949 -15.80170 -15.35428 -14.93521 -14.79456 -14.62361 -14.48300 -14.31358 -14.03326 -13.84756 -13.31669 -13.09362 -12.92208 -12.80665 -12.79014 -12.42259 -12.30261 -12.27559 -12.24755 -12.05324 -11.92549 -11.74073 -11.55791 -11.14930 -11.07101 -11.00713 -11.00470 -10.85746 -10.79463 -10.33188 -10.30119 -10.17705 -9.94355 -9.75718 -9.52028 -8.81934 -8.77053 -7.11286 -5.69097 -3.02678 1.05078 1.54219 1.59673 2.87500 3.35119 3.40446 3.44571 3.48337 3.77084 3.89317 4.08856 4.15513 4.20785 4.57159 4.65228 4.68009 4.95746 4.97420 4.97946 5.04441 5.07094 5.14975 5.19503 5.21737 5.24472 5.27849 5.32464 5.48596 5.57613 5.61874 5.62465 5.69893 5.71002 5.79255 5.88516 5.94133 5.96303 6.05862 6.08089 6.18796 6.32500 6.41980 6.54130 6.78662 6.97677 7.62314 8.08666 8.16680 8.33653 8.49888 9.29666 10.01941 10.22495 11.49746 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.009709 B = 0.004275 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2883.115152 B = 6547.455688 C = 8132.226448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.177 3.823 3 C -0.162 4.162 4 C -0.159 4.159 5 N -0.127 5.127 6 N -0.059 5.059 7 N -0.258 5.258 8 C 0.133 3.867 9 C 0.624 3.376 10 O -0.498 6.498 11 N -0.692 5.692 12 C 0.200 3.800 13 C -0.164 4.164 14 C 0.145 3.855 15 N -0.751 5.751 16 C -0.234 4.234 17 H 0.090 0.910 18 C 0.003 3.997 19 N -0.936 5.936 20 Si 0.877 3.123 21 H -0.284 1.284 22 H -0.292 1.292 23 H -0.277 1.277 24 C -0.156 4.156 25 C -0.167 4.167 26 C -0.182 4.182 27 N -0.244 5.244 28 H 0.077 0.923 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.406 0.594 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.055 0.945 41 H 0.038 0.962 42 H 0.056 0.944 43 H 0.359 0.641 44 H 0.258 0.742 45 H 0.118 0.882 46 H 0.102 0.898 47 H 0.095 0.905 48 H 0.094 0.906 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.789 -12.762 -16.855 23.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.096 3.904 3 C -0.221 4.221 4 C -0.217 4.217 5 N -0.042 5.042 6 N -0.052 5.052 7 N -0.132 5.132 8 C -0.151 4.151 9 C 0.404 3.596 10 O -0.369 6.369 11 N -0.344 5.344 12 C 0.115 3.885 13 C -0.222 4.222 14 C 0.018 3.982 15 N -0.397 5.397 16 C -0.364 4.364 17 H 0.108 0.892 18 C -0.192 4.192 19 N -0.585 5.585 20 Si 0.708 3.292 21 H -0.210 1.210 22 H -0.219 1.219 23 H -0.203 1.203 24 C -0.175 4.175 25 C -0.204 4.204 26 C -0.220 4.220 27 N -0.097 5.097 28 H 0.096 0.904 29 H 0.109 0.891 30 H 0.094 0.906 31 H 0.100 0.900 32 H 0.110 0.890 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.110 0.890 36 H 0.098 0.902 37 H 0.241 0.759 38 H 0.097 0.903 39 H 0.090 0.910 40 H 0.074 0.926 41 H 0.056 0.944 42 H 0.074 0.926 43 H 0.192 0.808 44 H 0.068 0.932 45 H 0.136 0.864 46 H 0.120 0.880 47 H 0.114 0.886 48 H 0.112 0.888 49 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -9.415 -12.280 -17.282 23.197 hybrid contribution -1.405 -0.182 0.792 1.623 sum -10.820 -12.461 -16.491 23.330 Atomic orbital electron populations 1.22103 0.89916 1.04595 1.04467 1.21491 0.96528 0.92996 0.79363 1.22280 1.03768 0.91788 1.04245 1.22248 1.03591 1.00950 0.94944 1.50709 1.01035 1.34438 1.18022 1.78832 1.21721 1.09065 0.95563 1.76110 1.00272 1.17899 1.18961 1.25450 0.94619 1.01788 0.93243 1.15964 0.84504 0.78421 0.80744 1.90789 1.24918 1.54293 1.66912 1.45683 1.11144 1.56660 1.20949 1.20208 0.84273 0.95909 0.88112 1.22294 0.99524 0.98521 1.01845 1.21091 0.92882 0.87856 0.96389 1.42629 1.13589 1.17204 1.66258 1.19071 0.99491 0.90637 1.27174 0.89199 1.24620 0.97560 0.96216 1.00824 1.69700 1.36386 1.08649 1.43757 0.86640 0.86558 0.77564 0.78458 1.21037 1.21890 1.20279 1.22522 1.05557 0.90589 0.98797 1.23077 0.95138 1.00225 1.01944 1.22994 0.95802 1.00414 1.02741 1.74981 1.02489 1.16711 1.15525 0.90439 0.89143 0.90581 0.90036 0.89025 0.91094 0.91394 0.89031 0.90167 0.75873 0.90289 0.90990 0.92586 0.94408 0.92648 0.80791 0.93242 0.86390 0.87954 0.88646 0.88759 0.88735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 7.90 37.16 0.29 -0.70 16 2 C 0.18 1.56 1.30 -131.82 -0.17 1.39 16 3 C -0.16 -1.34 8.66 37.16 0.32 -1.01 16 4 C -0.16 -1.08 8.66 37.16 0.32 -0.75 16 5 N -0.13 -1.73 3.72 0.52 0.00 -1.73 16 6 N -0.06 -0.89 12.21 60.35 0.74 -0.15 16 7 N -0.26 -4.36 12.27 32.10 0.39 -3.97 16 8 C 0.13 2.38 8.14 -156.25 -1.27 1.10 16 9 C 0.62 11.61 7.24 -12.26 -0.09 11.52 16 10 O -0.50 -10.33 13.33 5.33 0.07 -10.26 16 11 N -0.69 -11.45 4.73 -48.49 -0.23 -11.68 16 12 C 0.20 3.23 0.54 -131.82 -0.07 3.16 16 13 C -0.16 -2.25 7.10 37.16 0.26 -1.98 16 14 C 0.15 3.04 4.90 -4.04 -0.02 3.02 16 15 N -0.75 -18.56 4.84 -59.91 -0.29 -18.85 16 16 C -0.23 -6.91 10.47 -15.06 -0.16 -7.06 16 17 H 0.09 2.86 8.06 -52.49 -0.42 2.43 16 18 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 19 N -0.94 -30.41 13.97 55.49 0.78 -29.64 16 20 Si 0.88 23.04 27.73 -169.99 -4.71 18.32 16 21 H -0.28 -7.27 7.11 56.52 0.40 -6.87 16 22 H -0.29 -7.81 7.11 56.52 0.40 -7.41 16 23 H -0.28 -6.95 6.52 56.52 0.37 -6.58 16 24 C -0.16 -2.25 4.86 -90.61 -0.44 -2.69 16 25 C -0.17 -1.92 9.64 -26.69 -0.26 -2.18 16 26 C -0.18 -2.05 9.72 -26.69 -0.26 -2.31 16 27 N -0.24 -4.04 11.85 32.11 0.38 -3.66 16 28 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.08 0.51 8.14 -51.92 -0.42 0.09 16 31 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.41 6.14 8.13 -40.82 -0.33 5.81 16 38 H 0.08 1.23 6.31 -51.93 -0.33 0.90 16 39 H 0.07 0.89 6.78 -51.93 -0.35 0.53 16 40 H 0.06 0.66 6.99 -51.93 -0.36 0.30 16 41 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.06 1.29 6.04 -51.93 -0.31 0.98 16 43 H 0.36 8.65 4.48 -40.82 -0.18 8.47 16 44 H 0.26 7.98 8.31 -40.82 -0.34 7.64 16 45 H 0.12 1.98 7.08 -51.93 -0.37 1.61 16 46 H 0.10 1.07 5.88 -51.93 -0.31 0.77 16 47 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 48 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 49 H 0.09 0.99 7.35 -51.93 -0.38 0.61 16 LS Contribution 393.14 15.07 5.92 5.92 Total: -1.00 -36.33 393.14 -6.17 -42.50 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: -7.59 Total: 11.70 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: -1.63 Total: 1.49 kcal Atomic # 7 Polarization: -71.45 SS G_CDS: 1.77 Total: -69.68 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.07 Total: -10.26 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -4.71 Total: 18.32 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -36.33 -6.17 -42.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269619299.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.049 kcal (2) G-P(sol) polarization free energy of solvation -36.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds