Wall clock time and date at job start Tue Mar 31 2020 20:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.46923 * 2 1 4 4 C 1.52997 * 109.47189 * 240.00243 * 2 1 3 5 5 N 1.46494 * 109.47458 * 120.00072 * 2 1 3 6 6 N 1.28724 * 125.31864 * 359.97240 * 5 2 1 7 7 N 1.28978 * 108.98556 * 180.02562 * 6 5 2 8 8 C 1.34189 * 107.25460 * 0.02562 * 7 6 5 9 9 C 1.48004 * 126.69572 * 179.97438 * 8 7 6 10 10 O 1.21541 * 119.99912 * 180.02562 * 9 8 7 11 11 N 1.34772 * 120.00467 * 0.02562 * 9 8 7 12 12 C 1.46503 * 120.00228 * 184.98102 * 11 9 8 13 13 C 1.52999 * 109.47053 * 295.81276 * 12 11 9 14 14 C 1.52997 * 109.46913 * 55.81352 * 12 11 9 15 15 N 1.46497 * 109.47395 * 59.99862 * 14 12 11 16 16 C 1.36937 * 120.00105 * 179.97438 * 15 14 12 17 17 H 1.08001 * 119.99897 * 0.02562 * 16 15 14 18 18 C 1.38812 * 119.99884 * 179.97438 * 16 15 14 19 19 N 1.31618 * 119.99755 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 120.00211 * 0.02562 * 18 16 15 21 21 H 1.48504 * 109.47423 * 89.99520 * 20 18 16 22 22 H 1.48493 * 109.47472 * 209.99533 * 20 18 16 23 23 H 1.48503 * 109.47285 * 329.99719 * 20 18 16 24 24 C 1.53000 * 109.47070 * 175.81083 * 12 11 9 25 25 C 1.53003 * 117.49514 * 132.73242 * 24 12 11 26 26 C 1.53008 * 117.49871 * 64.07871 * 24 12 11 27 27 N 1.28870 * 125.32209 * 180.29041 * 5 2 1 28 28 H 1.09004 * 109.47089 * 299.99576 * 1 2 3 29 29 H 1.09000 * 109.47821 * 60.00149 * 1 2 3 30 30 H 1.09007 * 109.47138 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47102 * 180.02562 * 3 2 1 32 32 H 1.09006 * 109.46920 * 300.00095 * 3 2 1 33 33 H 1.08997 * 109.47294 * 59.99735 * 3 2 1 34 34 H 1.09002 * 109.47026 * 299.99735 * 4 2 1 35 35 H 1.09006 * 109.47310 * 59.99503 * 4 2 1 36 36 H 1.08996 * 109.47557 * 179.97438 * 4 2 1 37 37 H 0.96999 * 119.99779 * 4.98228 * 11 9 8 38 38 H 1.09005 * 109.47199 * 59.99810 * 13 12 11 39 39 H 1.09003 * 109.47090 * 179.97438 * 13 12 11 40 40 H 1.08994 * 109.47161 * 299.99713 * 13 12 11 41 41 H 1.09003 * 109.47026 * 180.02562 * 14 12 11 42 42 H 1.09002 * 109.47171 * 299.99480 * 14 12 11 43 43 H 0.97001 * 119.99617 * 0.02562 * 15 14 12 44 44 H 0.97007 * 120.00131 * 180.02562 * 19 18 16 45 45 H 1.08996 * 115.55422 * 278.40664 * 24 12 11 46 46 H 1.08997 * 117.49944 * 0.02562 * 25 24 12 47 47 H 1.09002 * 117.49719 * 145.02015 * 25 24 12 48 48 H 1.08998 * 117.49406 * 214.98158 * 26 24 12 49 49 H 1.09000 * 117.49643 * 359.97438 * 26 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 2.0184 -0.6906 1.1961 6 7 1.2762 -1.2160 2.1072 7 7 2.0308 -1.7387 3.0132 8 6 3.3030 -1.5250 2.6436 9 6 4.5190 -1.9460 3.3747 10 8 5.6183 -1.6862 2.9260 11 7 4.4075 -2.6173 4.5380 12 6 5.6064 -2.9384 5.3163 13 6 6.4938 -3.8934 4.5155 14 6 6.3801 -1.6527 5.6148 15 7 5.5304 -0.7382 6.3816 16 6 6.0128 0.4843 6.7663 17 1 7.0195 0.7745 6.5041 18 6 5.2075 1.3510 7.4924 19 7 5.6709 2.5262 7.8617 20 14 3.4661 0.8494 7.9453 21 1 3.4764 0.1553 9.2582 22 1 2.6091 2.0589 8.0317 23 1 2.9282 -0.0652 6.9063 24 6 5.1973 -3.6044 6.6316 25 6 5.9402 -4.8783 7.0393 26 6 4.4929 -4.9601 6.5479 27 7 3.2581 -0.8619 1.5035 28 1 -0.3633 0.5138 0.8901 29 1 -0.3635 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.1299 1.4426 -0.0005 32 1 1.6765 1.9564 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.6767 -1.7489 -1.2493 35 1 1.6766 -0.2074 -2.1393 36 1 3.1299 -0.7208 -1.2495 37 1 3.5334 -2.8880 4.8598 38 1 6.7852 -3.4189 3.5784 39 1 7.3860 -4.1319 5.0944 40 1 5.9426 -4.8094 4.3029 41 1 7.2724 -1.8916 6.1935 42 1 6.6716 -1.1782 4.6778 43 1 4.6264 -0.9990 6.6174 44 1 5.1083 3.1317 8.3695 45 1 4.8890 -2.9253 7.4265 46 1 6.7206 -5.2416 6.3708 47 1 6.1204 -5.0374 8.1025 48 1 3.7214 -5.1728 7.2879 49 1 4.3205 -5.3772 5.5557 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269619299.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:54 Heat of formation + Delta-G solvation = 113.697464 kcal Electronic energy + Delta-G solvation = -30605.688465 eV Core-core repulsion = 26606.864958 eV Total energy + Delta-G solvation = -3998.823507 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -45.61539 -41.56376 -39.21556 -38.59865 -36.54359 -35.30343 -34.64761 -33.86780 -33.20417 -31.46806 -28.64553 -28.56885 -27.83600 -26.70367 -25.63483 -24.86559 -23.90692 -23.13506 -22.18697 -21.62329 -20.45641 -19.72159 -19.21126 -18.56790 -17.84910 -17.07976 -16.80144 -16.58959 -16.14722 -16.05642 -15.50153 -15.30099 -15.20845 -15.15310 -14.78770 -14.51615 -14.08909 -13.96942 -13.90436 -13.51667 -13.46761 -13.31622 -13.25609 -13.20128 -12.90558 -12.88449 -12.67089 -12.43477 -12.39431 -12.34896 -12.15178 -12.14084 -12.12266 -12.01534 -11.88249 -11.48533 -11.38362 -11.14972 -11.04837 -10.91539 -10.20977 -9.29691 -8.06865 -5.38527 -0.16902 0.24245 0.63255 1.28601 1.32433 1.38813 1.61529 1.96107 2.41690 2.71505 2.87688 3.08060 3.24358 3.45263 3.49081 3.54204 3.61201 3.69615 3.80023 3.99095 4.11969 4.17049 4.26590 4.34281 4.38710 4.49017 4.52611 4.56651 4.58988 4.69334 4.69956 4.76743 4.82384 4.85058 4.96202 4.98846 5.05056 5.06699 5.07749 5.15470 5.19000 5.22600 5.34752 5.41482 5.45156 5.71588 6.16468 6.28411 6.87400 7.03068 7.03500 7.78963 8.00587 9.15252 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.009709 B = 0.004275 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2883.115152 B = 6547.455688 C = 8132.226448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.158 3.842 3 C -0.161 4.161 4 C -0.154 4.154 5 N -0.110 5.110 6 N -0.058 5.058 7 N -0.269 5.269 8 C 0.112 3.888 9 C 0.619 3.381 10 O -0.530 6.530 11 N -0.683 5.683 12 C 0.208 3.792 13 C -0.156 4.156 14 C 0.144 3.856 15 N -0.747 5.747 16 C -0.229 4.229 17 H 0.052 0.948 18 C -0.061 4.061 19 N -0.983 5.983 20 Si 0.948 3.052 21 H -0.267 1.267 22 H -0.296 1.296 23 H -0.261 1.261 24 C -0.186 4.186 25 C -0.154 4.154 26 C -0.158 4.158 27 N -0.260 5.260 28 H 0.064 0.936 29 H 0.129 0.871 30 H 0.074 0.926 31 H 0.059 0.941 32 H 0.133 0.867 33 H 0.054 0.946 34 H 0.066 0.934 35 H 0.131 0.869 36 H 0.061 0.939 37 H 0.414 0.586 38 H 0.057 0.943 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.039 0.961 42 H 0.028 0.972 43 H 0.365 0.635 44 H 0.257 0.743 45 H 0.093 0.907 46 H 0.116 0.884 47 H 0.104 0.896 48 H 0.107 0.893 49 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.309 -15.100 -17.958 26.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.079 3.921 3 C -0.219 4.219 4 C -0.212 4.212 5 N -0.027 5.027 6 N -0.051 5.051 7 N -0.144 5.144 8 C -0.171 4.171 9 C 0.399 3.601 10 O -0.403 6.403 11 N -0.335 5.335 12 C 0.123 3.877 13 C -0.214 4.214 14 C 0.017 3.983 15 N -0.393 5.393 16 C -0.360 4.360 17 H 0.070 0.930 18 C -0.252 4.252 19 N -0.634 5.634 20 Si 0.775 3.225 21 H -0.192 1.192 22 H -0.223 1.223 23 H -0.186 1.186 24 C -0.205 4.205 25 C -0.191 4.191 26 C -0.195 4.195 27 N -0.114 5.114 28 H 0.083 0.917 29 H 0.148 0.852 30 H 0.094 0.906 31 H 0.078 0.922 32 H 0.152 0.848 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.149 0.851 36 H 0.080 0.920 37 H 0.251 0.749 38 H 0.076 0.924 39 H 0.106 0.894 40 H 0.101 0.899 41 H 0.057 0.943 42 H 0.046 0.954 43 H 0.199 0.801 44 H 0.066 0.934 45 H 0.111 0.889 46 H 0.134 0.866 47 H 0.122 0.878 48 H 0.126 0.874 49 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -11.955 -14.676 -18.387 26.389 hybrid contribution -0.568 0.630 1.007 1.317 sum -12.524 -14.046 -17.379 25.616 Atomic orbital electron populations 1.22178 0.87699 1.04976 1.05782 1.22247 0.98254 0.93097 0.78466 1.22334 1.02422 0.91652 1.05504 1.22289 1.02460 1.01264 0.95205 1.51326 1.00025 1.32987 1.18376 1.78741 1.21527 1.09120 0.95672 1.76057 0.99869 1.18643 1.19784 1.25357 0.94747 1.03053 0.93981 1.16195 0.84442 0.78274 0.81145 1.90770 1.26087 1.55613 1.67845 1.45710 1.11771 1.55861 1.20135 1.20111 0.84067 0.93845 0.89690 1.22241 0.99996 0.98583 1.00549 1.21164 0.93376 0.89454 0.94332 1.42534 1.14206 1.16171 1.66379 1.19024 0.98075 0.92451 1.26452 0.92997 1.25415 1.02298 0.96200 1.01304 1.69883 1.38266 1.10129 1.45117 0.85511 0.80585 0.77311 0.79092 1.19244 1.22325 1.18578 1.22301 1.09456 0.91708 0.96987 1.23224 0.95868 0.97105 1.02895 1.23099 0.95994 0.96579 1.03816 1.74942 1.04093 1.16884 1.15439 0.91683 0.85226 0.90649 0.92168 0.84843 0.92721 0.91446 0.85086 0.91968 0.74918 0.92422 0.89352 0.89867 0.94335 0.95432 0.80139 0.93366 0.88883 0.86577 0.87796 0.87420 0.87418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 7.90 71.98 0.57 -0.97 16 2 C 0.16 2.51 1.30 3.60 0.00 2.52 16 3 C -0.16 -2.43 8.66 71.98 0.62 -1.81 16 4 C -0.15 -1.75 8.66 71.98 0.62 -1.13 16 5 N -0.11 -2.95 3.72 -152.27 -0.57 -3.52 16 6 N -0.06 -1.72 12.21 37.02 0.45 -1.27 16 7 N -0.27 -9.03 12.27 -52.37 -0.64 -9.68 16 8 C 0.11 4.06 8.14 137.15 1.12 5.18 16 9 C 0.62 23.47 7.24 86.83 0.63 24.10 16 10 O -0.53 -22.87 13.33 -3.85 -0.05 -22.92 16 11 N -0.68 -22.29 4.73 -425.61 -2.01 -24.30 16 12 C 0.21 6.57 0.54 3.60 0.00 6.57 16 13 C -0.16 -4.05 7.10 71.98 0.51 -3.54 16 14 C 0.14 6.16 4.90 86.38 0.42 6.59 16 15 N -0.75 -37.65 4.84 -343.46 -1.66 -39.31 16 16 C -0.23 -14.03 10.47 84.03 0.88 -13.15 16 17 H 0.05 3.51 8.06 -2.91 -0.02 3.48 16 18 C -0.06 -3.79 5.50 84.86 0.47 -3.32 16 19 N -0.98 -65.85 13.97 21.65 0.30 -65.55 16 20 Si 0.95 48.14 27.73 68.60 1.90 50.04 16 21 H -0.27 -12.80 7.11 99.48 0.71 -12.10 16 22 H -0.30 -15.22 7.11 99.48 0.71 -14.51 16 23 H -0.26 -12.40 6.52 99.48 0.65 -11.75 16 24 C -0.19 -5.00 4.86 -10.79 -0.05 -5.05 16 25 C -0.15 -3.04 9.64 30.62 0.30 -2.74 16 26 C -0.16 -2.97 9.72 30.62 0.30 -2.68 16 27 N -0.26 -8.74 11.85 -52.32 -0.62 -9.36 16 28 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.13 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 31 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.13 0.85 8.14 -2.38 -0.02 0.83 16 33 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.13 0.45 8.14 -2.38 -0.02 0.43 16 36 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.41 12.05 8.13 -92.71 -0.75 11.30 16 38 H 0.06 1.78 6.31 -2.38 -0.02 1.77 16 39 H 0.09 1.99 6.78 -2.39 -0.02 1.98 16 40 H 0.08 1.72 6.99 -2.39 -0.02 1.71 16 41 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.03 1.36 6.04 -2.39 -0.01 1.34 16 43 H 0.36 17.51 4.48 -92.71 -0.42 17.09 16 44 H 0.26 16.37 8.31 -92.70 -0.77 15.60 16 45 H 0.09 3.01 7.08 -2.39 -0.02 3.00 16 46 H 0.12 1.99 5.88 -2.39 -0.01 1.97 16 47 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 48 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 49 H 0.11 1.79 7.35 -2.39 -0.02 1.77 16 Total: -1.00 -83.53 393.14 3.24 -80.29 By element: Atomic # 1 Polarization: 35.26 SS G_CDS: -0.25 Total: 35.01 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: 6.39 Total: 10.57 kcal Atomic # 7 Polarization: -148.24 SS G_CDS: -4.75 Total: -152.99 kcal Atomic # 8 Polarization: -22.87 SS G_CDS: -0.05 Total: -22.92 kcal Atomic # 14 Polarization: 48.14 SS G_CDS: 1.90 Total: 50.04 kcal Total: -83.53 3.24 -80.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269619299.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.986 kcal (2) G-P(sol) polarization free energy of solvation -83.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds