Wall clock time and date at job start Tue Mar 31 2020 19:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42899 * 113.99678 * 2 1 4 4 C 1.52999 * 109.46946 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47000 * 64.99929 * 4 3 2 6 6 C 1.36930 * 120.00244 * 270.00389 * 5 4 3 7 7 H 1.08002 * 120.00547 * 141.80369 * 6 5 4 8 8 C 1.38818 * 119.99841 * 321.79273 * 6 5 4 9 9 N 1.31616 * 119.99917 * 339.28429 * 8 6 5 10 10 Si 1.86798 * 119.99810 * 159.27439 * 8 6 5 11 11 H 1.48498 * 109.47439 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.46843 * 120.00496 * 10 8 6 13 13 H 1.48502 * 109.47410 * 240.00350 * 10 8 6 14 14 C 1.46502 * 119.99922 * 89.99757 * 5 4 3 15 15 C 1.53043 * 109.45998 * 124.70595 * 14 5 4 16 16 C 1.53194 * 109.31413 * 181.39184 * 15 14 5 17 17 N 1.46936 * 108.77158 * 305.36294 * 16 15 14 18 18 C 1.34774 * 120.62904 * 233.58712 * 17 16 15 19 19 O 1.21283 * 119.99993 * 0.02562 * 18 17 16 20 20 C 1.50694 * 119.99729 * 180.02562 * 18 17 16 21 21 N 1.46502 * 109.47089 * 180.02562 * 20 18 17 22 22 C 1.34952 * 126.04005 * 124.71556 * 21 20 18 23 23 C 1.35316 * 107.74615 * 179.83755 * 22 21 20 24 24 C 1.39869 * 107.91966 * 0.42297 * 23 22 21 25 25 N 1.30844 * 108.20236 * 359.73737 * 24 23 22 26 26 C 1.46930 * 118.73505 * 53.86083 * 17 16 15 27 27 C 1.53033 * 109.46369 * 244.77537 * 14 5 4 28 28 H 1.08999 * 109.46824 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47465 * 300.00142 * 1 2 3 30 30 H 1.09009 * 109.46582 * 60.00427 * 1 2 3 31 31 H 1.09004 * 109.47412 * 59.99653 * 3 2 1 32 32 H 1.09003 * 109.47207 * 299.99644 * 3 2 1 33 33 H 1.08997 * 109.47372 * 305.00147 * 4 3 2 34 34 H 1.08999 * 109.47263 * 184.99798 * 4 3 2 35 35 H 0.96995 * 119.99612 * 180.02562 * 9 8 6 36 36 H 1.09004 * 109.45710 * 4.73795 * 14 5 4 37 37 H 1.08990 * 109.49726 * 61.43413 * 15 14 5 38 38 H 1.09005 * 109.52187 * 301.35199 * 15 14 5 39 39 H 1.08995 * 109.58908 * 185.58181 * 16 15 14 40 40 H 1.08993 * 109.70867 * 65.21781 * 16 15 14 41 41 H 1.08999 * 109.47156 * 300.00024 * 20 18 17 42 42 H 1.09002 * 109.47157 * 60.00084 * 20 18 17 43 43 H 1.07992 * 126.12222 * 359.97438 * 22 21 20 44 44 H 1.07994 * 126.04036 * 180.16387 * 23 22 21 45 45 H 1.08000 * 125.90015 * 179.76094 * 24 23 22 46 46 H 1.08998 * 109.58674 * 65.92942 * 26 17 16 47 47 H 1.09006 * 109.58111 * 186.34937 * 26 17 16 48 48 H 1.09003 * 109.50063 * 298.56857 * 27 14 5 49 49 H 1.09005 * 109.49837 * 58.63149 * 27 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.0977 -0.7974 -1.3345 7 1 3.8137 -1.3102 -2.2416 8 6 4.5859 -1.5185 -0.2534 9 7 5.3001 -0.9140 0.6723 10 14 4.2288 -3.3466 -0.1123 11 1 3.4118 -3.7824 -1.2732 12 1 5.5079 -4.1009 -0.0966 13 1 3.4835 -3.6098 1.1448 14 6 4.2882 1.3998 -2.4130 15 6 5.7095 1.0966 -2.8929 16 6 6.0442 1.9969 -4.0863 17 7 5.0098 1.8223 -5.1151 18 6 5.3469 1.5044 -6.3807 19 8 6.5134 1.3592 -6.6794 20 6 4.2743 1.3293 -7.4247 21 7 4.8931 0.9884 -8.7081 22 6 4.6100 -0.0934 -9.4636 23 6 5.3908 -0.0413 -10.5676 24 6 6.1850 1.1066 -10.4792 25 7 5.8875 1.7247 -9.3650 26 6 3.6014 2.0069 -4.7393 27 6 3.2938 1.1011 -3.5373 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.6885 1.8465 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8508 0.5686 0.8426 34 1 3.9784 2.1766 0.0902 35 1 5.6415 -1.4180 1.4274 36 1 4.2157 2.4511 -2.1341 37 1 5.7760 0.0516 -3.1954 38 1 6.4153 1.2870 -2.0843 39 1 7.0157 1.7172 -4.4938 40 1 6.0685 3.0383 -3.7657 41 1 3.6004 0.5277 -7.1224 42 1 3.7121 2.2574 -7.5272 43 1 3.8879 -0.8617 -9.2301 44 1 5.4021 -0.7613 -11.3724 45 1 6.9170 1.4277 -11.2054 46 1 3.4289 3.0486 -4.4690 47 1 2.9607 1.7339 -5.5779 48 1 3.3831 0.0560 -3.8338 49 1 2.2798 1.2945 -3.1871 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269639650.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:17 Heat of formation + Delta-G solvation = 37.957465 kcal Electronic energy + Delta-G solvation = -30211.431661 eV Core-core repulsion = 26177.031070 eV Total energy + Delta-G solvation = -4034.400591 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.23108 -39.85044 -37.69549 -36.87245 -34.98697 -33.48823 -32.03561 -30.90887 -30.53693 -30.07765 -28.36343 -27.35145 -25.71397 -24.79176 -23.30929 -22.81314 -21.45003 -21.13810 -20.67510 -19.92554 -18.82444 -17.51020 -17.14246 -16.34359 -15.83618 -15.60829 -15.51287 -15.09115 -14.82902 -14.57773 -14.26483 -14.06661 -13.95048 -13.69917 -13.53951 -13.46199 -13.27319 -13.03253 -12.77446 -12.44238 -12.17982 -12.09329 -11.79132 -11.59257 -11.39138 -10.94516 -10.83582 -10.80958 -10.67500 -10.65011 -10.47914 -10.16654 -9.94778 -9.89215 -9.82355 -9.49918 -9.31448 -8.87291 -8.63963 -8.45699 -8.39143 -6.53311 -5.72497 -3.29220 1.83060 2.33038 2.62131 2.86033 3.10655 3.42359 3.50476 3.52414 4.27676 4.50481 4.52795 4.64051 4.72760 4.82395 4.96394 5.03364 5.13872 5.40073 5.42295 5.48039 5.48450 5.61662 5.69236 5.70166 5.73053 5.81528 5.91042 5.94817 5.99532 6.02807 6.06687 6.11442 6.21641 6.33125 6.41271 6.54826 6.59424 6.63381 6.69318 6.73992 6.88806 7.08050 7.19306 7.48240 7.62633 7.69099 7.88679 8.03120 8.21393 8.58930 9.23094 9.86977 10.42098 11.29316 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.014389 B = 0.002952 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.522002 B = 9481.639061 C = 9839.194830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.354 6.354 3 C 0.047 3.953 4 C 0.144 3.856 5 N -0.571 5.571 6 C -0.235 4.235 7 H 0.054 0.946 8 C 0.020 3.980 9 N -0.891 5.891 10 Si 0.895 3.105 11 H -0.279 1.279 12 H -0.295 1.295 13 H -0.289 1.289 14 C 0.177 3.823 15 C -0.130 4.130 16 C 0.114 3.886 17 N -0.603 5.603 18 C 0.500 3.500 19 O -0.519 6.519 20 C 0.116 3.884 21 N -0.361 5.361 22 C 0.052 3.948 23 C -0.274 4.274 24 C 0.036 3.964 25 N -0.267 5.267 26 C 0.106 3.894 27 C -0.142 4.142 28 H 0.074 0.926 29 H 0.026 0.974 30 H 0.028 0.972 31 H 0.023 0.977 32 H 0.026 0.974 33 H 0.103 0.897 34 H 0.039 0.961 35 H 0.252 0.748 36 H 0.046 0.954 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.084 0.916 40 H 0.061 0.939 41 H 0.124 0.876 42 H 0.112 0.888 43 H 0.173 0.827 44 H 0.146 0.854 45 H 0.181 0.819 46 H 0.068 0.932 47 H 0.072 0.928 48 H 0.069 0.931 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.455 6.518 -13.270 16.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.271 6.271 3 C -0.032 4.032 4 C 0.017 3.983 5 N -0.290 5.290 6 C -0.364 4.364 7 H 0.072 0.928 8 C -0.179 4.179 9 N -0.535 5.535 10 Si 0.725 3.275 11 H -0.204 1.204 12 H -0.222 1.222 13 H -0.216 1.216 14 C 0.069 3.931 15 C -0.170 4.170 16 C -0.008 4.008 17 N -0.337 5.337 18 C 0.286 3.714 19 O -0.394 6.394 20 C -0.010 4.010 21 N -0.144 5.144 22 C -0.093 4.093 23 C -0.303 4.303 24 C -0.151 4.151 25 N -0.088 5.088 26 C -0.017 4.017 27 C -0.182 4.182 28 H 0.092 0.908 29 H 0.044 0.956 30 H 0.046 0.954 31 H 0.041 0.959 32 H 0.044 0.956 33 H 0.120 0.880 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.102 0.898 40 H 0.079 0.921 41 H 0.142 0.858 42 H 0.130 0.870 43 H 0.190 0.810 44 H 0.164 0.836 45 H 0.198 0.802 46 H 0.087 0.913 47 H 0.090 0.910 48 H 0.087 0.913 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.444 7.240 -12.373 15.718 hybrid contribution -0.881 -1.549 -0.209 1.794 sum -7.325 5.691 -12.582 15.632 Atomic orbital electron populations 1.22630 0.84355 1.01436 0.98344 1.88229 1.16425 1.27681 1.94797 1.23451 0.98977 0.84066 0.96688 1.21039 0.87371 0.96582 0.93318 1.43730 1.75192 1.02703 1.07382 1.18704 1.35820 0.81494 1.00432 0.92795 1.25030 0.96393 0.97419 0.99103 1.69956 1.34620 1.35521 1.13363 0.86371 0.77324 0.86066 0.77729 1.20373 1.22215 1.21578 1.20319 0.91169 0.93518 0.88097 1.22248 0.99247 1.00013 0.95474 1.21774 0.91330 0.99617 0.88114 1.48135 1.08290 1.68914 1.08383 1.20369 0.90065 0.77955 0.83054 1.90763 1.19235 1.49692 1.79674 1.21564 0.94525 1.04684 0.80180 1.48150 1.30811 1.18817 1.16600 1.22557 1.01668 0.92151 0.92930 1.21467 1.04046 1.02861 1.01955 1.23901 1.00309 0.95070 0.95822 1.77486 1.04422 1.19467 1.07402 1.21976 0.80614 1.00515 0.98618 1.22502 1.00751 0.99764 0.95183 0.90788 0.95568 0.95377 0.95901 0.95561 0.87968 0.94276 0.93848 0.93528 0.91038 0.90736 0.89752 0.92059 0.85795 0.87041 0.80981 0.83610 0.80220 0.91328 0.91003 0.91251 0.91450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 101.05 1.11 1.58 16 2 O -0.35 -7.33 10.18 -35.23 -0.36 -7.69 16 3 C 0.05 0.89 6.28 37.16 0.23 1.12 16 4 C 0.14 3.10 5.70 -4.04 -0.02 3.08 16 5 N -0.57 -12.69 2.34 -165.61 -0.39 -13.08 16 6 C -0.23 -5.96 7.60 -15.06 -0.11 -6.08 16 7 H 0.05 1.42 7.09 -52.49 -0.37 1.04 16 8 C 0.02 0.54 4.97 -17.43 -0.09 0.45 16 9 N -0.89 -24.82 11.47 55.49 0.64 -24.18 16 10 Si 0.89 21.83 29.60 -169.99 -5.03 16.79 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 13 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 14 C 0.18 3.19 2.59 -67.89 -0.18 3.02 16 15 C -0.13 -2.40 5.23 -26.61 -0.14 -2.54 16 16 C 0.11 1.78 6.43 -3.70 -0.02 1.76 16 17 N -0.60 -8.50 2.97 -172.50 -0.51 -9.01 16 18 C 0.50 7.55 7.73 -10.99 -0.08 7.47 16 19 O -0.52 -10.15 15.12 5.55 0.08 -10.07 16 20 C 0.12 1.27 5.34 -5.20 -0.03 1.25 16 21 N -0.36 -4.75 3.40 -62.55 -0.21 -4.97 16 22 C 0.05 0.57 11.45 -17.22 -0.20 0.37 16 23 C -0.27 -2.95 10.80 -40.01 -0.43 -3.38 16 24 C 0.04 0.44 12.03 -17.36 -0.21 0.23 16 25 N -0.27 -4.08 11.64 30.63 0.36 -3.73 16 26 C 0.11 1.22 6.37 -3.49 -0.02 1.19 16 27 C -0.14 -2.15 5.39 -26.39 -0.14 -2.29 16 28 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.03 0.39 8.14 -51.92 -0.42 -0.04 16 31 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.10 2.61 5.54 -51.93 -0.29 2.32 16 34 H 0.04 0.78 7.88 -51.93 -0.41 0.37 16 35 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 36 H 0.05 0.79 7.77 -51.93 -0.40 0.39 16 37 H 0.07 1.52 7.61 -51.93 -0.40 1.13 16 38 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 39 H 0.08 1.45 7.00 -51.93 -0.36 1.09 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.12 0.99 7.63 -51.93 -0.40 0.59 16 42 H 0.11 0.96 7.93 -51.93 -0.41 0.55 16 43 H 0.17 1.23 8.06 -52.49 -0.42 0.81 16 44 H 0.15 1.18 8.06 -52.49 -0.42 0.75 16 45 H 0.18 1.62 8.06 -52.49 -0.42 1.19 16 46 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.07 0.60 5.93 -51.93 -0.31 0.29 16 48 H 0.07 1.20 7.24 -51.93 -0.38 0.83 16 49 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 394.35 15.07 5.94 5.94 Total: -1.00 -34.13 394.35 -7.75 -41.88 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -7.93 Total: 0.88 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: -0.33 Total: 7.23 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: -0.12 Total: -54.96 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: -0.27 Total: -17.76 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.13 -7.75 -41.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269639650.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.836 kcal (2) G-P(sol) polarization free energy of solvation -34.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds