Wall clock time and date at job start Tue Mar 31 2020 19:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42899 * 113.99678 * 2 1 4 4 C 1.52999 * 109.46946 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47000 * 64.99929 * 4 3 2 6 6 C 1.36930 * 120.00244 * 270.00389 * 5 4 3 7 7 H 1.08002 * 120.00547 * 141.80369 * 6 5 4 8 8 C 1.38818 * 119.99841 * 321.79273 * 6 5 4 9 9 N 1.31616 * 119.99917 * 339.28429 * 8 6 5 10 10 Si 1.86798 * 119.99810 * 159.27439 * 8 6 5 11 11 H 1.48498 * 109.47439 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.46843 * 120.00496 * 10 8 6 13 13 H 1.48502 * 109.47410 * 240.00350 * 10 8 6 14 14 C 1.46502 * 119.99922 * 89.99757 * 5 4 3 15 15 C 1.53043 * 109.45998 * 124.70595 * 14 5 4 16 16 C 1.53194 * 109.31413 * 181.39184 * 15 14 5 17 17 N 1.46936 * 108.77158 * 305.36294 * 16 15 14 18 18 C 1.34774 * 120.62904 * 233.58712 * 17 16 15 19 19 O 1.21283 * 119.99993 * 0.02562 * 18 17 16 20 20 C 1.50694 * 119.99729 * 180.02562 * 18 17 16 21 21 N 1.46502 * 109.47089 * 180.02562 * 20 18 17 22 22 C 1.34952 * 126.04005 * 124.71556 * 21 20 18 23 23 C 1.35316 * 107.74615 * 179.83755 * 22 21 20 24 24 C 1.39869 * 107.91966 * 0.42297 * 23 22 21 25 25 N 1.30844 * 108.20236 * 359.73737 * 24 23 22 26 26 C 1.46930 * 118.73505 * 53.86083 * 17 16 15 27 27 C 1.53033 * 109.46369 * 244.77537 * 14 5 4 28 28 H 1.08999 * 109.46824 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47465 * 300.00142 * 1 2 3 30 30 H 1.09009 * 109.46582 * 60.00427 * 1 2 3 31 31 H 1.09004 * 109.47412 * 59.99653 * 3 2 1 32 32 H 1.09003 * 109.47207 * 299.99644 * 3 2 1 33 33 H 1.08997 * 109.47372 * 305.00147 * 4 3 2 34 34 H 1.08999 * 109.47263 * 184.99798 * 4 3 2 35 35 H 0.96995 * 119.99612 * 180.02562 * 9 8 6 36 36 H 1.09004 * 109.45710 * 4.73795 * 14 5 4 37 37 H 1.08990 * 109.49726 * 61.43413 * 15 14 5 38 38 H 1.09005 * 109.52187 * 301.35199 * 15 14 5 39 39 H 1.08995 * 109.58908 * 185.58181 * 16 15 14 40 40 H 1.08993 * 109.70867 * 65.21781 * 16 15 14 41 41 H 1.08999 * 109.47156 * 300.00024 * 20 18 17 42 42 H 1.09002 * 109.47157 * 60.00084 * 20 18 17 43 43 H 1.07992 * 126.12222 * 359.97438 * 22 21 20 44 44 H 1.07994 * 126.04036 * 180.16387 * 23 22 21 45 45 H 1.08000 * 125.90015 * 179.76094 * 24 23 22 46 46 H 1.08998 * 109.58674 * 65.92942 * 26 17 16 47 47 H 1.09006 * 109.58111 * 186.34937 * 26 17 16 48 48 H 1.09003 * 109.50063 * 298.56857 * 27 14 5 49 49 H 1.09005 * 109.49837 * 58.63149 * 27 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.0977 -0.7974 -1.3345 7 1 3.8137 -1.3102 -2.2416 8 6 4.5859 -1.5185 -0.2534 9 7 5.3001 -0.9140 0.6723 10 14 4.2288 -3.3466 -0.1123 11 1 3.4118 -3.7824 -1.2732 12 1 5.5079 -4.1009 -0.0966 13 1 3.4835 -3.6098 1.1448 14 6 4.2882 1.3998 -2.4130 15 6 5.7095 1.0966 -2.8929 16 6 6.0442 1.9969 -4.0863 17 7 5.0098 1.8223 -5.1151 18 6 5.3469 1.5044 -6.3807 19 8 6.5134 1.3592 -6.6794 20 6 4.2743 1.3293 -7.4247 21 7 4.8931 0.9884 -8.7081 22 6 4.6100 -0.0934 -9.4636 23 6 5.3908 -0.0413 -10.5676 24 6 6.1850 1.1066 -10.4792 25 7 5.8875 1.7247 -9.3650 26 6 3.6014 2.0069 -4.7393 27 6 3.2938 1.1011 -3.5373 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.6885 1.8465 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8508 0.5686 0.8426 34 1 3.9784 2.1766 0.0902 35 1 5.6415 -1.4180 1.4274 36 1 4.2157 2.4511 -2.1341 37 1 5.7760 0.0516 -3.1954 38 1 6.4153 1.2870 -2.0843 39 1 7.0157 1.7172 -4.4938 40 1 6.0685 3.0383 -3.7657 41 1 3.6004 0.5277 -7.1224 42 1 3.7121 2.2574 -7.5272 43 1 3.8879 -0.8617 -9.2301 44 1 5.4021 -0.7613 -11.3724 45 1 6.9170 1.4277 -11.2054 46 1 3.4289 3.0486 -4.4690 47 1 2.9607 1.7339 -5.5779 48 1 3.3831 0.0560 -3.8338 49 1 2.2798 1.2945 -3.1871 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269639650.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:15 Heat of formation + Delta-G solvation = 15.173006 kcal Electronic energy + Delta-G solvation = -30212.419670 eV Core-core repulsion = 26177.031070 eV Total energy + Delta-G solvation = -4035.388600 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.10843 -41.00482 -39.15205 -38.25224 -36.52351 -34.46047 -33.67533 -32.37802 -31.88949 -30.93539 -29.84225 -28.41712 -27.11613 -26.30697 -24.74825 -24.07142 -22.63357 -22.07014 -21.94801 -21.32223 -20.02734 -18.60062 -18.18904 -17.92228 -17.28277 -16.76086 -16.64077 -16.58384 -16.48957 -15.69360 -15.55945 -15.43773 -15.23787 -15.18245 -14.76281 -14.55000 -14.42854 -14.11340 -13.74562 -13.59049 -13.39922 -13.34091 -13.18857 -13.07057 -12.88526 -12.74191 -12.54797 -12.30303 -12.20079 -12.07390 -11.78867 -11.57370 -11.52417 -11.45084 -11.12954 -11.02093 -10.39621 -10.27242 -10.26053 -9.65254 -9.47713 -8.40987 -7.69849 -5.28479 0.97944 1.44016 1.48562 1.51751 1.53588 1.54951 2.02793 2.05949 2.58208 3.26217 3.32574 3.42275 3.63110 3.73317 3.96728 4.08802 4.10035 4.17178 4.25182 4.26121 4.37463 4.46614 4.48386 4.57192 4.66293 4.68285 4.72828 4.74772 4.81726 4.84107 4.87636 4.92141 4.93344 4.95531 5.03697 5.14198 5.18683 5.24274 5.46235 5.63479 5.67739 5.77728 5.78655 5.89614 6.11599 6.40069 6.54735 6.73333 6.82885 7.10053 7.32000 8.01590 8.50299 9.26268 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.014389 B = 0.002952 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.522002 B = 9481.639061 C = 9839.194830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.398 6.398 3 C 0.058 3.942 4 C 0.140 3.860 5 N -0.584 5.584 6 C -0.213 4.213 7 H 0.044 0.956 8 C -0.030 4.030 9 N -0.920 5.920 10 Si 0.936 3.064 11 H -0.272 1.272 12 H -0.302 1.302 13 H -0.296 1.296 14 C 0.171 3.829 15 C -0.117 4.117 16 C 0.125 3.875 17 N -0.602 5.602 18 C 0.494 3.506 19 O -0.573 6.573 20 C 0.117 3.883 21 N -0.375 5.375 22 C 0.051 3.949 23 C -0.284 4.284 24 C 0.026 3.974 25 N -0.323 5.323 26 C 0.111 3.889 27 C -0.130 4.130 28 H 0.078 0.922 29 H 0.043 0.957 30 H 0.047 0.953 31 H 0.042 0.958 32 H 0.047 0.953 33 H 0.061 0.939 34 H 0.052 0.948 35 H 0.243 0.757 36 H 0.066 0.934 37 H 0.033 0.967 38 H 0.046 0.954 39 H 0.061 0.939 40 H 0.084 0.916 41 H 0.161 0.839 42 H 0.142 0.858 43 H 0.210 0.790 44 H 0.170 0.830 45 H 0.200 0.800 46 H 0.096 0.904 47 H 0.115 0.885 48 H 0.043 0.957 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.595 7.589 -15.271 20.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.316 6.316 3 C -0.021 4.021 4 C 0.013 3.987 5 N -0.303 5.303 6 C -0.344 4.344 7 H 0.062 0.938 8 C -0.226 4.226 9 N -0.566 5.566 10 Si 0.767 3.233 11 H -0.196 1.196 12 H -0.230 1.230 13 H -0.223 1.223 14 C 0.065 3.935 15 C -0.157 4.157 16 C 0.002 3.998 17 N -0.335 5.335 18 C 0.282 3.718 19 O -0.452 6.452 20 C -0.007 4.007 21 N -0.158 5.158 22 C -0.094 4.094 23 C -0.313 4.313 24 C -0.160 4.160 25 N -0.144 5.144 26 C -0.011 4.011 27 C -0.170 4.170 28 H 0.097 0.903 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.053 0.947 36 H 0.085 0.915 37 H 0.052 0.948 38 H 0.065 0.935 39 H 0.080 0.920 40 H 0.102 0.898 41 H 0.178 0.822 42 H 0.160 0.840 43 H 0.227 0.773 44 H 0.188 0.812 45 H 0.217 0.783 46 H 0.114 0.886 47 H 0.133 0.867 48 H 0.062 0.938 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.639 8.329 -14.396 19.223 hybrid contribution 0.080 -1.864 0.387 1.905 sum -9.559 6.466 -14.009 18.150 Atomic orbital electron populations 1.22804 0.81702 1.02426 1.00087 1.88152 1.19453 1.28856 1.95187 1.23230 0.96468 0.83898 0.98512 1.20963 0.89920 0.96147 0.91646 1.43907 1.75602 1.02110 1.08723 1.18724 1.33137 0.83270 0.99299 0.93839 1.25499 0.97570 0.99746 0.99805 1.70068 1.36605 1.36053 1.13922 0.85693 0.76645 0.83578 0.77349 1.19644 1.23012 1.22339 1.20561 0.91360 0.93848 0.87741 1.22051 0.99425 0.98364 0.95846 1.21489 0.91152 0.99881 0.87321 1.48220 1.09068 1.68354 1.07897 1.21190 0.90402 0.76510 0.83727 1.90743 1.21852 1.51988 1.80637 1.21833 0.93142 1.07605 0.78141 1.48353 1.30832 1.19354 1.17227 1.23255 1.01800 0.91932 0.92404 1.21871 1.03638 1.02831 1.02917 1.24413 1.00585 0.95510 0.95500 1.77405 1.06452 1.21622 1.08937 1.22182 0.79316 1.01133 0.98487 1.22300 1.00094 0.99200 0.95394 0.90325 0.93883 0.93403 0.94018 0.93453 0.92112 0.92994 0.94725 0.91537 0.94806 0.93527 0.92011 0.89755 0.82204 0.84023 0.77347 0.81215 0.78326 0.88618 0.86682 0.93803 0.90359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 11.01 113.37 1.25 2.00 16 2 O -0.40 -15.88 10.18 -148.98 -1.52 -17.40 16 3 C 0.06 2.03 6.28 71.98 0.45 2.49 16 4 C 0.14 5.98 5.70 86.38 0.49 6.48 16 5 N -0.58 -25.84 2.34 -677.88 -1.59 -27.43 16 6 C -0.21 -10.99 7.60 84.04 0.64 -10.36 16 7 H 0.04 2.32 7.09 -2.91 -0.02 2.30 16 8 C -0.03 -1.65 4.97 84.86 0.42 -1.23 16 9 N -0.92 -53.32 11.47 21.65 0.25 -53.08 16 10 Si 0.94 45.96 29.60 68.60 2.03 47.99 16 11 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 12 H -0.30 -15.03 7.11 99.48 0.71 -14.32 16 13 H -0.30 -14.72 7.11 99.48 0.71 -14.01 16 14 C 0.17 5.98 2.59 45.02 0.12 6.09 16 15 C -0.12 -4.40 5.23 30.67 0.16 -4.24 16 16 C 0.12 3.86 6.43 86.36 0.56 4.41 16 17 N -0.60 -15.63 2.97 -818.05 -2.43 -18.06 16 18 C 0.49 14.07 7.73 87.66 0.68 14.75 16 19 O -0.57 -22.65 15.12 -3.04 -0.05 -22.69 16 20 C 0.12 2.15 5.34 85.63 0.46 2.61 16 21 N -0.37 -9.01 3.40 -351.80 -1.20 -10.21 16 22 C 0.05 0.96 11.45 83.54 0.96 1.91 16 23 C -0.28 -5.50 10.80 21.99 0.24 -5.26 16 24 C 0.03 0.62 12.03 85.24 1.02 1.65 16 25 N -0.32 -9.63 11.64 -57.02 -0.66 -10.29 16 26 C 0.11 2.03 6.37 86.51 0.55 2.58 16 27 C -0.13 -3.55 5.39 30.81 0.17 -3.39 16 28 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 31 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.05 1.46 8.14 -2.39 -0.02 1.45 16 33 H 0.06 3.18 5.54 -2.39 -0.01 3.17 16 34 H 0.05 2.02 7.88 -2.39 -0.02 2.00 16 35 H 0.24 13.94 8.31 -92.71 -0.77 13.17 16 36 H 0.07 2.08 7.77 -2.38 -0.02 2.06 16 37 H 0.03 1.50 7.61 -2.39 -0.02 1.48 16 38 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 39 H 0.06 2.20 7.00 -2.39 -0.02 2.19 16 40 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 41 H 0.16 1.73 7.63 -2.39 -0.02 1.71 16 42 H 0.14 1.74 7.93 -2.39 -0.02 1.72 16 43 H 0.21 2.09 8.06 -2.91 -0.02 2.07 16 44 H 0.17 2.28 8.06 -2.91 -0.02 2.25 16 45 H 0.20 3.44 8.06 -2.91 -0.02 3.42 16 46 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 47 H 0.12 1.20 5.93 -2.38 -0.01 1.19 16 48 H 0.04 1.43 7.24 -2.39 -0.02 1.42 16 49 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 Total: -1.00 -80.40 394.35 3.93 -76.47 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: 0.93 Total: 14.20 kcal Atomic # 6 Polarization: 12.33 SS G_CDS: 8.16 Total: 20.49 kcal Atomic # 7 Polarization: -113.44 SS G_CDS: -5.62 Total: -119.06 kcal Atomic # 8 Polarization: -38.53 SS G_CDS: -1.56 Total: -40.09 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -80.40 3.93 -76.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269639650.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.644 kcal (2) G-P(sol) polarization free energy of solvation -80.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds