Wall clock time and date at job start Tue Mar 31 2020 19:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99917 * 2 1 4 4 H 1.48495 * 109.47100 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46993 * 299.99632 * 3 2 1 6 6 H 1.48500 * 109.46973 * 59.99514 * 3 2 1 7 7 C 1.38815 * 119.99934 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99427 * 180.02562 * 7 2 1 9 9 N 1.36926 * 120.00181 * 0.02562 * 7 2 1 10 10 C 1.46501 * 120.00225 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47533 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.46317 * 294.99817 * 11 10 9 13 13 N 1.46494 * 109.47057 * 54.99662 * 11 10 9 14 14 C 1.34784 * 119.99635 * 205.00313 * 13 11 10 15 15 O 1.21279 * 119.99925 * 359.97438 * 14 13 11 16 16 C 1.50700 * 119.99961 * 180.02562 * 14 13 11 17 17 C 1.52992 * 109.47257 * 180.02562 * 16 14 13 18 18 N 1.46499 * 109.47267 * 179.97438 * 17 16 14 19 19 C 1.34603 * 126.43842 * 125.00093 * 18 17 16 20 20 N 1.31075 * 106.67787 * 180.02562 * 19 18 17 21 21 N 1.28839 * 107.99074 * 359.97438 * 20 19 18 22 22 N 1.28741 * 109.39943 * 359.73521 * 21 20 19 23 23 C 1.53001 * 109.47243 * 174.99920 * 11 10 9 24 24 C 1.53005 * 109.46842 * 299.99816 * 23 11 10 25 25 C 1.53000 * 109.46659 * 180.02562 * 24 23 11 26 26 C 1.52990 * 109.47456 * 59.99936 * 25 24 23 27 27 C 1.53005 * 109.47239 * 299.99709 * 26 25 24 28 28 C 1.52999 * 109.46922 * 179.97438 * 23 11 10 29 29 H 0.96999 * 120.00476 * 0.02562 * 1 2 3 30 30 H 0.97006 * 120.00561 * 0.02562 * 9 7 2 31 31 H 1.09000 * 109.47370 * 59.99623 * 10 9 7 32 32 H 1.09011 * 109.46866 * 299.99867 * 10 9 7 33 33 H 0.96995 * 120.00292 * 25.27746 * 13 11 10 34 34 H 1.09004 * 109.46932 * 300.00223 * 16 14 13 35 35 H 1.08997 * 109.47392 * 59.99562 * 16 14 13 36 36 H 1.09004 * 109.47330 * 299.99977 * 17 16 14 37 37 H 1.09005 * 109.47124 * 59.99773 * 17 16 14 38 38 H 1.07994 * 126.65974 * 359.96460 * 19 18 17 39 39 H 1.08996 * 109.46997 * 59.99455 * 23 11 10 40 40 H 1.08996 * 109.46732 * 300.00078 * 24 23 11 41 41 H 1.08995 * 109.46887 * 59.99995 * 24 23 11 42 42 H 1.08996 * 109.46807 * 299.99410 * 25 24 23 43 43 H 1.09000 * 109.46737 * 180.02562 * 25 24 23 44 44 H 1.08997 * 109.47512 * 179.97438 * 26 25 24 45 45 H 1.08996 * 109.47542 * 59.99924 * 26 25 24 46 46 H 1.09005 * 109.47252 * 300.00369 * 27 26 25 47 47 H 1.08992 * 109.47614 * 180.02562 * 27 26 25 48 48 H 1.09002 * 109.46860 * 299.99137 * 28 23 11 49 49 H 1.08991 * 109.46991 * 59.99670 * 28 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0017 11 6 1.0639 -4.8198 0.0008 12 1 0.4967 -4.8134 0.9316 13 7 0.1457 -4.6764 -1.1317 14 6 -1.0788 -5.2373 -1.0815 15 8 -1.4203 -5.8610 -0.0991 16 6 -2.0232 -5.0903 -2.2466 17 6 -3.3344 -5.8143 -1.9348 18 7 -4.2527 -5.6709 -3.0673 19 6 -4.8554 -6.6694 -3.7392 20 7 -5.5867 -6.1081 -4.6710 21 7 -5.4411 -4.8315 -4.5759 22 7 -4.6404 -4.5636 -3.6041 23 6 1.8249 -6.1412 -0.1238 24 6 2.6212 -6.1499 -1.4303 25 6 3.3817 -7.4717 -1.5551 26 6 2.3872 -8.6342 -1.5562 27 6 1.5909 -8.6255 -0.2497 28 6 0.8307 -7.3042 -0.1240 29 1 -0.4851 0.8400 -0.0004 30 1 0.3556 -2.3881 -0.0002 31 1 2.6841 -3.7141 0.8921 32 1 2.6855 -3.7149 -0.8879 33 1 0.4205 -4.1812 -1.9191 34 1 -2.2246 -4.0331 -2.4199 35 1 -1.5709 -5.5248 -3.1381 36 1 -3.1334 -6.8715 -1.7613 37 1 -3.7866 -5.3794 -1.0435 38 1 -4.7551 -7.7276 -3.5484 39 1 2.5081 -6.2478 0.7188 40 1 1.9379 -6.0433 -2.2728 41 1 3.3294 -5.3214 -1.4296 42 1 4.0648 -7.5787 -0.7126 43 1 3.9493 -7.4777 -2.4857 44 1 2.9289 -9.5758 -1.6456 45 1 1.7040 -8.5272 -2.3987 46 1 2.2741 -8.7325 0.5929 47 1 0.8827 -9.4540 -0.2502 48 1 0.2639 -7.2978 0.8070 49 1 0.1473 -7.1976 -0.9663 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271353187.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:15 Heat of formation + Delta-G solvation = 72.202164 kcal Electronic energy + Delta-G solvation = -29972.028722 eV Core-core repulsion = 25971.405843 eV Total energy + Delta-G solvation = -4000.622879 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.32434 -40.41311 -38.36973 -36.30316 -35.72511 -33.70940 -32.69544 -32.12869 -31.13462 -30.70805 -30.56189 -27.33732 -25.89954 -24.01977 -23.94290 -22.86003 -22.70679 -21.81565 -20.71447 -20.21809 -19.40871 -18.22353 -17.37944 -17.15314 -16.59912 -16.15565 -15.95369 -15.82100 -15.21598 -14.67702 -14.50176 -14.19320 -14.14004 -13.83842 -13.48253 -13.34444 -13.22157 -13.15942 -12.84199 -12.50521 -12.35512 -12.26772 -12.02084 -11.79858 -11.68469 -11.33120 -11.17276 -11.08697 -11.03977 -11.02696 -10.87395 -10.85999 -10.51928 -10.48565 -10.27396 -10.12904 -9.85344 -9.80599 -9.74748 -8.97030 -8.74989 -7.02806 -5.84800 -3.14820 1.08066 1.74526 2.09408 2.65265 3.28459 3.38493 3.44186 3.46596 3.97270 4.02679 4.28631 4.48744 4.60691 4.66547 4.69785 4.73220 4.75875 4.94366 5.13107 5.14693 5.19574 5.27410 5.34861 5.40884 5.42230 5.48350 5.51369 5.54376 5.58905 5.64974 5.72385 5.83665 5.89655 5.94352 5.99681 6.05267 6.08065 6.17183 6.22558 6.33547 6.37037 6.42609 6.50853 6.61586 6.80930 7.62438 7.63638 8.28083 8.33085 8.44394 9.45198 9.99839 10.34836 11.37438 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.006758 B = 0.004024 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4142.335467 B = 6956.651960 C =10439.158774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.010 4.010 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.245 4.245 8 H 0.071 0.929 9 N -0.731 5.731 10 C 0.142 3.858 11 C 0.143 3.857 12 H 0.088 0.912 13 N -0.700 5.700 14 C 0.524 3.476 15 O -0.546 6.546 16 C -0.160 4.160 17 C 0.132 3.868 18 N -0.306 5.306 19 C 0.157 3.843 20 N -0.311 5.311 21 N -0.079 5.079 22 N -0.085 5.085 23 C -0.093 4.093 24 C -0.116 4.116 25 C -0.118 4.118 26 C -0.117 4.117 27 C -0.121 4.121 28 C -0.103 4.103 29 H 0.256 0.744 30 H 0.385 0.615 31 H 0.032 0.968 32 H 0.029 0.971 33 H 0.406 0.594 34 H 0.117 0.883 35 H 0.099 0.901 36 H 0.122 0.878 37 H 0.117 0.883 38 H 0.234 0.766 39 H 0.077 0.923 40 H 0.059 0.941 41 H 0.070 0.930 42 H 0.060 0.940 43 H 0.057 0.943 44 H 0.054 0.946 45 H 0.056 0.944 46 H 0.058 0.942 47 H 0.055 0.945 48 H 0.068 0.932 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.173 -20.527 -4.143 20.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.206 4.206 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.376 4.376 8 H 0.089 0.911 9 N -0.376 5.376 10 C 0.014 3.986 11 C 0.039 3.961 12 H 0.107 0.893 13 N -0.350 5.350 14 C 0.309 3.691 15 O -0.424 6.424 16 C -0.201 4.201 17 C 0.011 3.989 18 N -0.108 5.108 19 C -0.142 4.142 20 N -0.160 5.160 21 N -0.074 5.074 22 N -0.071 5.071 23 C -0.113 4.113 24 C -0.153 4.153 25 C -0.156 4.156 26 C -0.155 4.155 27 C -0.158 4.158 28 C -0.140 4.140 29 H 0.066 0.934 30 H 0.219 0.781 31 H 0.050 0.950 32 H 0.047 0.953 33 H 0.241 0.759 34 H 0.135 0.865 35 H 0.118 0.882 36 H 0.140 0.860 37 H 0.135 0.865 38 H 0.250 0.750 39 H 0.095 0.905 40 H 0.078 0.922 41 H 0.088 0.912 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.073 0.927 45 H 0.075 0.925 46 H 0.077 0.923 47 H 0.074 0.926 48 H 0.087 0.913 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.794 -19.736 -4.143 20.182 hybrid contribution 0.810 0.491 0.260 0.982 sum 0.016 -19.245 -3.883 19.633 Atomic orbital electron populations 1.69658 1.05103 1.25715 1.57288 1.24739 0.95492 0.97710 1.02670 0.86141 0.78775 0.84122 0.77256 1.20561 1.21810 1.21828 1.19230 0.91028 0.84034 1.43277 0.91134 1.42339 1.05930 0.99727 1.89595 1.21040 0.93209 0.85292 0.99041 1.21336 0.90643 0.94418 0.89738 0.89347 1.45884 1.14300 1.54040 1.20798 1.19870 0.82328 0.79044 0.87854 1.90717 1.76172 1.41891 1.33655 1.21911 0.93907 1.05105 0.99187 1.22016 0.87472 1.04603 0.84811 1.48875 1.32048 1.04532 1.25382 1.27739 0.95173 0.99099 0.92153 1.74994 1.20075 1.01287 1.19628 1.78676 1.11276 1.06810 1.10590 1.78976 1.11451 1.09843 1.06840 1.21528 0.97069 0.94379 0.98372 1.21634 0.98951 0.97219 0.97492 1.21524 0.97732 0.94931 1.01396 1.21519 0.98056 0.97988 0.97938 1.21572 0.98839 0.97953 0.97463 1.21594 0.96958 0.92844 1.02639 0.93447 0.78070 0.95018 0.95316 0.75936 0.86477 0.88227 0.86028 0.86472 0.75019 0.90479 0.92221 0.91188 0.92148 0.92430 0.92685 0.92486 0.92343 0.92611 0.91297 0.92275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.16 13.06 55.49 0.72 -26.44 16 2 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 3 Si 0.91 21.79 29.55 -169.99 -5.02 16.76 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 7 C -0.24 -6.47 9.99 -15.06 -0.15 -6.62 16 8 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 9 N -0.73 -16.92 5.43 -59.90 -0.33 -17.24 16 10 C 0.14 2.50 5.60 -4.04 -0.02 2.47 16 11 C 0.14 2.04 2.16 -67.93 -0.15 1.90 16 12 H 0.09 1.47 7.58 -51.93 -0.39 1.08 16 13 N -0.70 -9.03 3.64 -53.81 -0.20 -9.22 16 14 C 0.52 6.31 6.19 -10.98 -0.07 6.24 16 15 O -0.55 -7.64 13.10 5.56 0.07 -7.57 16 16 C -0.16 -1.48 5.84 -27.89 -0.16 -1.65 16 17 C 0.13 1.04 5.77 -4.05 -0.02 1.02 16 18 N -0.31 -2.97 3.44 -62.55 -0.22 -3.19 16 19 C 0.16 1.31 12.79 -90.38 -1.16 0.15 16 20 N -0.31 -3.90 12.36 29.59 0.37 -3.53 16 21 N -0.08 -1.17 13.43 60.35 0.81 -0.36 16 22 N -0.08 -1.15 13.08 60.35 0.79 -0.36 16 23 C -0.09 -1.08 2.07 -90.62 -0.19 -1.27 16 24 C -0.12 -1.22 4.70 -26.73 -0.13 -1.34 16 25 C -0.12 -1.09 5.92 -26.74 -0.16 -1.25 16 26 C -0.12 -1.03 5.92 -26.73 -0.16 -1.19 16 27 C -0.12 -1.13 5.92 -26.75 -0.16 -1.29 16 28 C -0.10 -1.14 3.73 -26.75 -0.10 -1.24 16 29 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 30 H 0.39 9.52 7.33 -40.82 -0.30 9.22 16 31 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.03 0.49 6.17 -51.92 -0.32 0.17 16 33 H 0.41 5.16 8.61 -40.82 -0.35 4.81 16 34 H 0.12 1.28 8.14 -51.93 -0.42 0.85 16 35 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.12 0.63 8.04 -51.93 -0.42 0.21 16 37 H 0.12 1.02 8.10 -51.93 -0.42 0.60 16 38 H 0.23 0.65 8.06 -52.49 -0.42 0.23 16 39 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.06 0.63 7.60 -51.93 -0.39 0.23 16 41 H 0.07 0.80 6.32 -51.93 -0.33 0.47 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 47 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.07 0.88 7.53 -51.93 -0.39 0.49 16 49 H 0.06 0.67 5.77 -51.93 -0.30 0.37 16 LS Contribution 389.20 15.07 5.87 5.87 Total: -1.00 -32.99 389.20 -7.66 -40.65 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -7.81 Total: 9.06 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: -2.71 Total: -4.43 kcal Atomic # 7 Polarization: -62.29 SS G_CDS: 1.95 Total: -60.34 kcal Atomic # 8 Polarization: -7.64 SS G_CDS: 0.07 Total: -7.57 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.99 -7.66 -40.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271353187.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.850 kcal (2) G-P(sol) polarization free energy of solvation -32.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds