Wall clock time and date at job start Tue Mar 31 2020 19:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99917 * 2 1 4 4 H 1.48495 * 109.47100 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46993 * 299.99632 * 3 2 1 6 6 H 1.48500 * 109.46973 * 59.99514 * 3 2 1 7 7 C 1.38815 * 119.99934 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99427 * 180.02562 * 7 2 1 9 9 N 1.36926 * 120.00181 * 0.02562 * 7 2 1 10 10 C 1.46501 * 120.00225 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47533 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.46317 * 294.99817 * 11 10 9 13 13 N 1.46494 * 109.47057 * 54.99662 * 11 10 9 14 14 C 1.34784 * 119.99635 * 205.00313 * 13 11 10 15 15 O 1.21279 * 119.99925 * 359.97438 * 14 13 11 16 16 C 1.50700 * 119.99961 * 180.02562 * 14 13 11 17 17 C 1.52992 * 109.47257 * 180.02562 * 16 14 13 18 18 N 1.46499 * 109.47267 * 179.97438 * 17 16 14 19 19 C 1.34603 * 126.43842 * 125.00093 * 18 17 16 20 20 N 1.31075 * 106.67787 * 180.02562 * 19 18 17 21 21 N 1.28839 * 107.99074 * 359.97438 * 20 19 18 22 22 N 1.28741 * 109.39943 * 359.73521 * 21 20 19 23 23 C 1.53001 * 109.47243 * 174.99920 * 11 10 9 24 24 C 1.53005 * 109.46842 * 299.99816 * 23 11 10 25 25 C 1.53000 * 109.46659 * 180.02562 * 24 23 11 26 26 C 1.52990 * 109.47456 * 59.99936 * 25 24 23 27 27 C 1.53005 * 109.47239 * 299.99709 * 26 25 24 28 28 C 1.52999 * 109.46922 * 179.97438 * 23 11 10 29 29 H 0.96999 * 120.00476 * 0.02562 * 1 2 3 30 30 H 0.97006 * 120.00561 * 0.02562 * 9 7 2 31 31 H 1.09000 * 109.47370 * 59.99623 * 10 9 7 32 32 H 1.09011 * 109.46866 * 299.99867 * 10 9 7 33 33 H 0.96995 * 120.00292 * 25.27746 * 13 11 10 34 34 H 1.09004 * 109.46932 * 300.00223 * 16 14 13 35 35 H 1.08997 * 109.47392 * 59.99562 * 16 14 13 36 36 H 1.09004 * 109.47330 * 299.99977 * 17 16 14 37 37 H 1.09005 * 109.47124 * 59.99773 * 17 16 14 38 38 H 1.07994 * 126.65974 * 359.96460 * 19 18 17 39 39 H 1.08996 * 109.46997 * 59.99455 * 23 11 10 40 40 H 1.08996 * 109.46732 * 300.00078 * 24 23 11 41 41 H 1.08995 * 109.46887 * 59.99995 * 24 23 11 42 42 H 1.08996 * 109.46807 * 299.99410 * 25 24 23 43 43 H 1.09000 * 109.46737 * 180.02562 * 25 24 23 44 44 H 1.08997 * 109.47512 * 179.97438 * 26 25 24 45 45 H 1.08996 * 109.47542 * 59.99924 * 26 25 24 46 46 H 1.09005 * 109.47252 * 300.00369 * 27 26 25 47 47 H 1.08992 * 109.47614 * 180.02562 * 27 26 25 48 48 H 1.09002 * 109.46860 * 299.99137 * 28 23 11 49 49 H 1.08991 * 109.46991 * 59.99670 * 28 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0017 11 6 1.0639 -4.8198 0.0008 12 1 0.4967 -4.8134 0.9316 13 7 0.1457 -4.6764 -1.1317 14 6 -1.0788 -5.2373 -1.0815 15 8 -1.4203 -5.8610 -0.0991 16 6 -2.0232 -5.0903 -2.2466 17 6 -3.3344 -5.8143 -1.9348 18 7 -4.2527 -5.6709 -3.0673 19 6 -4.8554 -6.6694 -3.7392 20 7 -5.5867 -6.1081 -4.6710 21 7 -5.4411 -4.8315 -4.5759 22 7 -4.6404 -4.5636 -3.6041 23 6 1.8249 -6.1412 -0.1238 24 6 2.6212 -6.1499 -1.4303 25 6 3.3817 -7.4717 -1.5551 26 6 2.3872 -8.6342 -1.5562 27 6 1.5909 -8.6255 -0.2497 28 6 0.8307 -7.3042 -0.1240 29 1 -0.4851 0.8400 -0.0004 30 1 0.3556 -2.3881 -0.0002 31 1 2.6841 -3.7141 0.8921 32 1 2.6855 -3.7149 -0.8879 33 1 0.4205 -4.1812 -1.9191 34 1 -2.2246 -4.0331 -2.4199 35 1 -1.5709 -5.5248 -3.1381 36 1 -3.1334 -6.8715 -1.7613 37 1 -3.7866 -5.3794 -1.0435 38 1 -4.7551 -7.7276 -3.5484 39 1 2.5081 -6.2478 0.7188 40 1 1.9379 -6.0433 -2.2728 41 1 3.3294 -5.3214 -1.4296 42 1 4.0648 -7.5787 -0.7126 43 1 3.9493 -7.4777 -2.4857 44 1 2.9289 -9.5758 -1.6456 45 1 1.7040 -8.5272 -2.3987 46 1 2.2741 -8.7325 0.5929 47 1 0.8827 -9.4540 -0.2502 48 1 0.2639 -7.2978 0.8070 49 1 0.1473 -7.1976 -0.9663 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271353187.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:14 Heat of formation + Delta-G solvation = 50.820010 kcal Electronic energy + Delta-G solvation = -29972.955921 eV Core-core repulsion = 25971.405843 eV Total energy + Delta-G solvation = -4001.550078 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -45.16562 -41.43908 -39.28453 -37.27535 -36.89362 -35.29723 -33.56756 -33.24091 -32.49884 -31.70546 -31.51562 -28.67770 -26.88036 -25.54731 -24.78621 -23.97580 -23.55202 -22.93717 -21.74159 -21.16368 -20.33912 -19.26146 -18.95934 -18.06623 -17.53423 -17.21254 -16.92017 -16.66087 -16.49463 -16.09416 -15.45900 -15.31788 -15.09651 -14.89289 -14.79844 -14.69838 -14.28696 -14.04772 -13.85385 -13.61817 -13.40695 -13.21595 -13.16954 -12.89323 -12.82277 -12.59174 -12.49687 -12.19617 -12.18593 -12.01874 -11.94948 -11.90365 -11.84130 -11.74647 -11.36651 -11.28443 -11.15880 -10.97540 -10.83834 -10.65628 -9.83186 -8.99051 -7.95114 -5.23400 0.29351 1.03101 1.23915 1.47326 1.48327 1.57519 1.66433 2.30164 2.55606 3.27832 3.40085 3.48942 3.57984 3.63581 3.78685 3.86057 3.90347 3.93820 4.15699 4.21400 4.27692 4.32418 4.37079 4.49359 4.52990 4.54910 4.62502 4.66964 4.71439 4.74597 4.79038 4.83283 4.87069 4.94329 5.10009 5.19772 5.26673 5.28680 5.30405 5.36510 5.38583 5.46531 5.52256 5.56692 5.64428 5.70463 6.26299 6.59363 7.26563 7.34353 7.57724 8.08772 8.31705 9.27812 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.006758 B = 0.004024 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4142.335467 B = 6956.651960 C =10439.158774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.071 4.071 3 Si 0.967 3.033 4 H -0.265 1.265 5 H -0.295 1.295 6 H -0.298 1.298 7 C -0.241 4.241 8 H 0.077 0.923 9 N -0.741 5.741 10 C 0.143 3.857 11 C 0.156 3.844 12 H 0.061 0.939 13 N -0.703 5.703 14 C 0.525 3.475 15 O -0.564 6.564 16 C -0.150 4.150 17 C 0.135 3.865 18 N -0.302 5.302 19 C 0.183 3.817 20 N -0.344 5.344 21 N -0.114 5.114 22 N -0.116 5.116 23 C -0.085 4.085 24 C -0.111 4.111 25 C -0.116 4.116 26 C -0.114 4.114 27 C -0.117 4.117 28 C -0.095 4.095 29 H 0.249 0.751 30 H 0.375 0.625 31 H 0.029 0.971 32 H 0.044 0.956 33 H 0.407 0.593 34 H 0.098 0.902 35 H 0.124 0.876 36 H 0.160 0.840 37 H 0.107 0.893 38 H 0.290 0.710 39 H 0.076 0.924 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.066 0.934 44 H 0.068 0.932 45 H 0.059 0.941 46 H 0.058 0.942 47 H 0.064 0.936 48 H 0.048 0.952 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.145 -23.082 -4.742 23.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.263 4.263 3 Si 0.797 3.203 4 H -0.189 1.189 5 H -0.222 1.222 6 H -0.226 1.226 7 C -0.373 4.373 8 H 0.095 0.905 9 N -0.384 5.384 10 C 0.016 3.984 11 C 0.051 3.949 12 H 0.079 0.921 13 N -0.353 5.353 14 C 0.311 3.689 15 O -0.444 6.444 16 C -0.191 4.191 17 C 0.015 3.985 18 N -0.104 5.104 19 C -0.114 4.114 20 N -0.193 5.193 21 N -0.108 5.108 22 N -0.103 5.103 23 C -0.105 4.105 24 C -0.149 4.149 25 C -0.154 4.154 26 C -0.151 4.151 27 C -0.155 4.155 28 C -0.132 4.132 29 H 0.058 0.942 30 H 0.207 0.793 31 H 0.047 0.953 32 H 0.061 0.939 33 H 0.242 0.758 34 H 0.116 0.884 35 H 0.142 0.858 36 H 0.177 0.823 37 H 0.125 0.875 38 H 0.305 0.695 39 H 0.094 0.906 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.085 0.915 44 H 0.087 0.913 45 H 0.078 0.922 46 H 0.077 0.923 47 H 0.083 0.917 48 H 0.067 0.933 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.567 -22.322 -4.744 22.828 hybrid contribution 0.455 1.173 0.518 1.361 sum 1.021 -21.149 -4.226 21.591 Atomic orbital electron populations 1.69807 1.06529 1.25826 1.59542 1.25468 0.96224 1.00819 1.03808 0.85167 0.78412 0.80299 0.76440 1.18927 1.22248 1.22554 1.19625 0.91496 0.85207 1.40924 0.90515 1.42507 1.05646 1.00876 1.89405 1.21185 0.93756 0.84223 0.99217 1.21056 0.90049 0.94576 0.89254 0.92076 1.45863 1.14687 1.54381 1.20324 1.20256 0.82068 0.78267 0.88279 1.90713 1.76373 1.42733 1.34580 1.21811 0.94119 1.04439 0.98747 1.22162 0.86130 1.06512 0.83714 1.48957 1.31978 1.04065 1.25436 1.28735 0.92341 1.00669 0.89696 1.74915 1.21887 1.00790 1.21689 1.78653 1.12384 1.08207 1.11589 1.78923 1.12185 1.11795 1.07385 1.21449 0.97003 0.92912 0.99174 1.21584 0.98694 0.97944 0.96663 1.21512 0.97772 0.94137 1.01945 1.21499 0.97908 0.98311 0.97428 1.21547 0.98944 0.96965 0.98039 1.21477 0.96673 0.93543 1.01528 0.94202 0.79302 0.95307 0.93871 0.75760 0.88377 0.85834 0.82259 0.87474 0.69464 0.90562 0.91951 0.92146 0.92082 0.91495 0.91341 0.92193 0.92311 0.91685 0.93308 0.92324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.71 13.06 21.65 0.28 -57.43 16 2 C -0.07 -3.92 5.50 84.86 0.47 -3.46 16 3 Si 0.97 45.11 29.55 68.60 2.03 47.14 16 4 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 5 H -0.30 -13.85 7.11 99.48 0.71 -13.15 16 6 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 7 C -0.24 -12.72 9.99 84.04 0.84 -11.88 16 8 H 0.08 3.89 7.83 -2.91 -0.02 3.87 16 9 N -0.74 -34.64 5.43 -343.44 -1.87 -36.50 16 10 C 0.14 4.99 5.60 86.38 0.48 5.47 16 11 C 0.16 4.43 2.16 44.99 0.10 4.53 16 12 H 0.06 2.09 7.58 -2.39 -0.02 2.07 16 13 N -0.70 -17.88 3.64 -442.53 -1.61 -19.49 16 14 C 0.52 12.26 6.19 87.66 0.54 12.80 16 15 O -0.56 -15.42 13.10 -3.03 -0.04 -15.46 16 16 C -0.15 -2.60 5.84 29.85 0.17 -2.43 16 17 C 0.14 1.85 5.77 86.38 0.50 2.35 16 18 N -0.30 -5.35 3.44 -351.82 -1.21 -6.56 16 19 C 0.18 2.54 12.79 180.27 2.31 4.85 16 20 N -0.34 -8.26 12.36 -60.29 -0.74 -9.00 16 21 N -0.11 -3.39 13.43 37.01 0.50 -2.89 16 22 N -0.12 -3.13 13.08 37.02 0.48 -2.65 16 23 C -0.09 -1.88 2.07 -10.79 -0.02 -1.90 16 24 C -0.11 -2.14 4.70 30.60 0.14 -1.99 16 25 C -0.12 -1.83 5.92 30.59 0.18 -1.65 16 26 C -0.11 -1.63 5.92 30.59 0.18 -1.45 16 27 C -0.12 -1.91 5.92 30.58 0.18 -1.72 16 28 C -0.09 -1.94 3.73 30.58 0.11 -1.83 16 29 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 30 H 0.37 18.98 7.33 -92.70 -0.68 18.30 16 31 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.04 1.43 6.17 -2.38 -0.01 1.41 16 33 H 0.41 10.20 8.61 -92.71 -0.80 9.40 16 34 H 0.10 2.16 8.14 -2.38 -0.02 2.14 16 35 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.16 1.01 8.04 -2.38 -0.02 0.99 16 37 H 0.11 1.75 8.10 -2.38 -0.02 1.73 16 38 H 0.29 0.10 8.06 -2.91 -0.02 0.07 16 39 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.06 1.17 7.60 -2.39 -0.02 1.15 16 41 H 0.06 1.28 6.32 -2.39 -0.02 1.26 16 42 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 46 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 47 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 48 H 0.05 1.21 7.53 -2.39 -0.02 1.19 16 49 H 0.06 1.21 5.77 -2.39 -0.01 1.19 16 Total: -1.00 -73.78 389.20 3.50 -70.28 By element: Atomic # 1 Polarization: 31.37 SS G_CDS: -0.50 Total: 30.87 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: 6.19 Total: 1.69 kcal Atomic # 7 Polarization: -130.36 SS G_CDS: -4.17 Total: -134.52 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: -0.04 Total: -15.46 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -73.78 3.50 -70.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271353187.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.102 kcal (2) G-P(sol) polarization free energy of solvation -73.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds