Wall clock time and date at job start Tue Mar 31 2020 19:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 119.99784 * 2 1 4 4 H 1.48509 * 109.47066 * 240.00141 * 3 2 1 5 5 H 1.48492 * 109.47421 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47256 * 120.00426 * 3 2 1 7 7 C 1.38813 * 119.99805 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99344 * 179.97438 * 7 2 1 9 9 N 1.36928 * 119.99946 * 359.97438 * 7 2 1 10 10 C 1.46506 * 119.99837 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47130 * 179.97438 * 10 9 7 12 12 H 1.09005 * 109.47168 * 65.00456 * 11 10 9 13 13 N 1.46496 * 109.47387 * 305.00258 * 11 10 9 14 14 C 1.34777 * 120.00271 * 154.99671 * 13 11 10 15 15 O 1.21278 * 119.99854 * 0.02562 * 14 13 11 16 16 C 1.50703 * 120.00161 * 180.02562 * 14 13 11 17 17 C 1.53000 * 109.46912 * 180.02562 * 16 14 13 18 18 N 1.46499 * 109.46840 * 180.02562 * 17 16 14 19 19 C 1.34603 * 126.44181 * 125.00114 * 18 17 16 20 20 N 1.31063 * 106.68051 * 179.97438 * 19 18 17 21 21 N 1.28846 * 107.99460 * 359.97438 * 20 19 18 22 22 N 1.28736 * 109.39039 * 359.73712 * 21 20 19 23 23 C 1.53002 * 109.47248 * 185.00271 * 11 10 9 24 24 C 1.52997 * 109.47086 * 300.00331 * 23 11 10 25 25 C 1.53004 * 109.47383 * 179.97438 * 24 23 11 26 26 C 1.52997 * 109.46915 * 59.99691 * 25 24 23 27 27 C 1.52997 * 109.47347 * 300.00331 * 26 25 24 28 28 C 1.52997 * 109.47248 * 179.97438 * 23 11 10 29 29 H 0.97004 * 119.99910 * 359.97438 * 1 2 3 30 30 H 0.96994 * 120.00209 * 0.02562 * 9 7 2 31 31 H 1.09008 * 109.46780 * 60.00319 * 10 9 7 32 32 H 1.08998 * 109.47235 * 300.00372 * 10 9 7 33 33 H 0.97005 * 120.00266 * 335.00254 * 13 11 10 34 34 H 1.09002 * 109.47152 * 60.00245 * 16 14 13 35 35 H 1.09001 * 109.46980 * 300.00345 * 16 14 13 36 36 H 1.09001 * 109.47194 * 299.99742 * 17 16 14 37 37 H 1.08992 * 109.47399 * 59.99914 * 17 16 14 38 38 H 1.08005 * 126.65789 * 359.95977 * 19 18 17 39 39 H 1.09005 * 109.46885 * 60.00012 * 23 11 10 40 40 H 1.09005 * 109.46998 * 299.99612 * 24 23 11 41 41 H 1.09005 * 109.47389 * 59.99430 * 24 23 11 42 42 H 1.09003 * 109.46825 * 300.00425 * 25 24 23 43 43 H 1.09000 * 109.47250 * 179.97438 * 25 24 23 44 44 H 1.08999 * 109.47176 * 180.02562 * 26 25 24 45 45 H 1.09005 * 109.47168 * 60.00346 * 26 25 24 46 46 H 1.09003 * 109.47487 * 299.99936 * 27 26 25 47 47 H 1.08998 * 109.47684 * 179.97438 * 27 26 25 48 48 H 1.09000 * 109.47324 * 299.99993 * 28 23 11 49 49 H 1.09005 * 109.47168 * 60.00185 * 28 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2126 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 6 1.0638 -4.8197 -0.0008 12 1 0.4965 -4.8134 -0.9316 13 7 0.1456 -4.6763 1.1317 14 6 -1.0790 -5.2371 1.0816 15 8 -1.4206 -5.8608 0.0992 16 6 -2.0238 -5.0891 2.2463 17 6 -3.3345 -5.8144 1.9351 18 7 -4.2531 -5.6700 3.0671 19 6 -5.5069 -5.1823 3.0222 20 7 -5.9727 -5.2286 4.2464 21 7 -5.0532 -5.7195 5.0038 22 7 -4.0149 -5.9928 4.2933 23 6 1.8247 -6.1412 0.1238 24 6 2.7837 -6.2910 -1.0588 25 6 3.5452 -7.6122 -0.9340 26 6 2.5513 -8.7754 -0.9327 27 6 1.5923 -8.6256 0.2499 28 6 0.8304 -7.3040 0.1254 29 1 -0.4850 0.8401 0.0004 30 1 0.3556 -2.3880 -0.0005 31 1 2.6853 -3.7149 0.8879 32 1 2.6840 -3.7141 -0.8921 33 1 0.4188 -4.1777 1.9176 34 1 -2.2252 -4.0318 2.4187 35 1 -1.5717 -5.5229 3.1382 36 1 -3.7867 -5.3808 1.0431 37 1 -3.1328 -6.8715 1.7630 38 1 -6.0279 -4.8225 2.1471 39 1 2.3920 -6.1474 1.0546 40 1 2.2164 -6.2847 -1.9896 41 1 3.4920 -5.4624 -1.0595 42 1 4.1124 -7.6180 -0.0032 43 1 4.2280 -7.7191 -1.7768 44 1 3.0937 -9.7166 -0.8433 45 1 1.9840 -8.7696 -1.8635 46 1 2.1595 -8.6314 1.1808 47 1 0.8839 -9.4540 0.2506 48 1 0.1476 -7.1971 0.9682 49 1 0.2628 -7.2980 -0.8052 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271353190.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:19 Heat of formation + Delta-G solvation = 69.332156 kcal Electronic energy + Delta-G solvation = -29714.950810 eV Core-core repulsion = 25714.203478 eV Total energy + Delta-G solvation = -4000.747331 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -44.32332 -40.31854 -38.39448 -36.32643 -35.73876 -33.73595 -32.69481 -32.15818 -31.25769 -30.64361 -30.52438 -27.31375 -25.88716 -24.00499 -23.90290 -22.84407 -22.51229 -21.79903 -20.68097 -20.18603 -19.67474 -18.20846 -17.36025 -17.21482 -16.56208 -16.12515 -15.98883 -15.87569 -15.30999 -14.66802 -14.28564 -14.15302 -13.96425 -13.93926 -13.62637 -13.31873 -13.26188 -13.13510 -12.83850 -12.44172 -12.32841 -12.11736 -11.99468 -11.93052 -11.61087 -11.34840 -11.33385 -11.07755 -11.04230 -10.94597 -10.90875 -10.73875 -10.52171 -10.50389 -10.28497 -10.15012 -9.90955 -9.81140 -9.75282 -9.00234 -8.75351 -7.06277 -5.88326 -3.17928 1.07625 1.74815 2.09780 2.64393 3.26697 3.36753 3.41832 3.42402 3.98139 4.07451 4.31486 4.46896 4.59526 4.64690 4.69770 4.78553 4.82921 4.97107 5.11447 5.14772 5.28094 5.29634 5.36172 5.40512 5.44514 5.49335 5.54204 5.56351 5.57814 5.67293 5.69017 5.84006 5.90627 5.95064 6.02216 6.07707 6.15742 6.22304 6.24984 6.33843 6.36219 6.42774 6.54401 6.60875 6.81248 7.58765 7.62819 8.27030 8.30113 8.43528 9.42039 9.96637 10.31890 11.33996 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.006250 B = 0.004040 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4479.276314 B = 6929.682318 C =10989.584419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.010 4.010 3 Si 0.907 3.093 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.244 4.244 8 H 0.070 0.930 9 N -0.731 5.731 10 C 0.143 3.857 11 C 0.143 3.857 12 H 0.088 0.912 13 N -0.704 5.704 14 C 0.524 3.476 15 O -0.545 6.545 16 C -0.160 4.160 17 C 0.132 3.868 18 N -0.306 5.306 19 C 0.163 3.837 20 N -0.311 5.311 21 N -0.080 5.080 22 N -0.093 5.093 23 C -0.092 4.092 24 C -0.115 4.115 25 C -0.117 4.117 26 C -0.119 4.119 27 C -0.120 4.120 28 C -0.103 4.103 29 H 0.256 0.744 30 H 0.385 0.615 31 H 0.024 0.976 32 H 0.037 0.963 33 H 0.406 0.594 34 H 0.108 0.892 35 H 0.110 0.890 36 H 0.124 0.876 37 H 0.114 0.886 38 H 0.235 0.765 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.070 0.930 42 H 0.059 0.941 43 H 0.059 0.941 44 H 0.055 0.945 45 H 0.060 0.940 46 H 0.056 0.944 47 H 0.055 0.945 48 H 0.057 0.943 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.886 -16.615 0.598 16.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.206 4.206 3 Si 0.738 3.262 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.375 4.375 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.016 3.984 11 C 0.038 3.962 12 H 0.106 0.894 13 N -0.353 5.353 14 C 0.309 3.691 15 O -0.424 6.424 16 C -0.201 4.201 17 C 0.011 3.989 18 N -0.108 5.108 19 C -0.135 4.135 20 N -0.159 5.159 21 N -0.074 5.074 22 N -0.079 5.079 23 C -0.112 4.112 24 C -0.153 4.153 25 C -0.154 4.154 26 C -0.156 4.156 27 C -0.158 4.158 28 C -0.141 4.141 29 H 0.066 0.934 30 H 0.219 0.781 31 H 0.041 0.959 32 H 0.055 0.945 33 H 0.241 0.759 34 H 0.126 0.874 35 H 0.128 0.872 36 H 0.143 0.857 37 H 0.132 0.868 38 H 0.252 0.748 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.088 0.912 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.073 0.927 45 H 0.079 0.921 46 H 0.075 0.925 47 H 0.074 0.926 48 H 0.076 0.924 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.920 -17.198 1.270 17.351 hybrid contribution 0.390 1.533 -0.706 1.732 sum -1.530 -15.665 0.565 15.750 Atomic orbital electron populations 1.69640 1.05140 1.25887 1.57378 1.24728 0.95502 0.97711 1.02663 0.86272 0.78565 0.83449 0.77903 1.21208 1.21659 1.21220 1.19162 0.91021 0.84059 1.43304 0.91190 1.42323 1.05891 0.99744 1.89623 1.21024 0.93186 0.85247 0.98992 1.21352 0.90643 0.94422 0.89738 0.89365 1.45917 1.14424 1.54001 1.20978 1.19887 0.82391 0.79021 0.87806 1.90719 1.76236 1.41766 1.33647 1.21913 0.94260 1.04103 0.99831 1.22018 0.88309 1.04754 0.83793 1.48837 1.13061 1.40144 1.08793 1.27795 0.84925 1.00412 1.00413 1.75001 1.23857 1.17413 0.99654 1.78640 0.94002 1.12232 1.22512 1.78856 1.22041 1.18235 0.88796 1.21519 0.96368 0.94243 0.99043 1.21606 0.98170 0.97347 0.98163 1.21514 0.97608 0.94797 1.01530 1.21532 0.97443 0.97843 0.98810 1.21579 0.98121 0.97934 0.98142 1.21616 0.96868 0.92881 1.02699 0.93415 0.78127 0.95864 0.94526 0.75894 0.87410 0.87222 0.85740 0.86764 0.74841 0.91273 0.91795 0.91173 0.92206 0.92241 0.92656 0.92120 0.92545 0.92597 0.92440 0.91175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.78 13.06 55.49 0.72 -26.05 16 2 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 3 Si 0.91 21.55 29.55 -169.99 -5.02 16.52 16 4 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.24 -6.42 9.99 -15.06 -0.15 -6.57 16 8 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 9 N -0.73 -16.81 5.43 -59.91 -0.33 -17.13 16 10 C 0.14 2.53 5.31 -4.04 -0.02 2.51 16 11 C 0.14 2.07 2.00 -67.93 -0.14 1.93 16 12 H 0.09 1.48 7.58 -51.93 -0.39 1.08 16 13 N -0.70 -9.26 4.41 -53.81 -0.24 -9.50 16 14 C 0.52 6.38 6.18 -10.98 -0.07 6.32 16 15 O -0.54 -7.70 13.10 5.56 0.07 -7.63 16 16 C -0.16 -1.49 5.85 -27.88 -0.16 -1.66 16 17 C 0.13 1.04 5.77 -4.04 -0.02 1.02 16 18 N -0.31 -2.97 3.44 -62.56 -0.22 -3.19 16 19 C 0.16 1.47 12.79 -90.39 -1.16 0.31 16 20 N -0.31 -3.99 12.36 29.59 0.37 -3.62 16 21 N -0.08 -1.14 13.43 60.35 0.81 -0.33 16 22 N -0.09 -1.18 13.08 60.35 0.79 -0.39 16 23 C -0.09 -1.10 1.96 -90.62 -0.18 -1.28 16 24 C -0.11 -1.31 4.85 -26.73 -0.13 -1.44 16 25 C -0.12 -1.15 5.92 -26.73 -0.16 -1.30 16 26 C -0.12 -1.13 5.92 -26.73 -0.16 -1.29 16 27 C -0.12 -1.22 5.92 -26.71 -0.16 -1.37 16 28 C -0.10 -1.21 3.73 -26.71 -0.10 -1.31 16 29 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 30 H 0.38 9.39 7.33 -40.82 -0.30 9.09 16 31 H 0.02 0.41 8.14 -51.92 -0.42 -0.01 16 32 H 0.04 0.66 6.71 -51.93 -0.35 0.31 16 33 H 0.41 5.23 8.60 -40.82 -0.35 4.88 16 34 H 0.11 1.06 8.14 -51.93 -0.42 0.63 16 35 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.12 0.79 8.04 -51.93 -0.42 0.37 16 37 H 0.11 0.85 8.10 -51.93 -0.42 0.43 16 38 H 0.24 0.92 8.06 -52.48 -0.42 0.50 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.07 0.83 6.54 -51.93 -0.34 0.49 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.06 0.70 5.78 -51.93 -0.30 0.40 16 49 H 0.07 0.94 7.53 -51.93 -0.39 0.55 16 LS Contribution 390.85 15.07 5.89 5.89 Total: -1.00 -32.40 390.85 -7.72 -40.12 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: -7.88 Total: 9.80 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: -2.70 Total: -4.49 kcal Atomic # 7 Polarization: -62.13 SS G_CDS: 1.91 Total: -60.22 kcal Atomic # 8 Polarization: -7.70 SS G_CDS: 0.07 Total: -7.63 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.40 -7.72 -40.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271353190.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.455 kcal (2) G-P(sol) polarization free energy of solvation -32.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds