Wall clock time and date at job start Tue Mar 31 2020 19:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 119.99784 * 2 1 4 4 H 1.48509 * 109.47066 * 240.00141 * 3 2 1 5 5 H 1.48492 * 109.47421 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47256 * 120.00426 * 3 2 1 7 7 C 1.38813 * 119.99805 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99344 * 179.97438 * 7 2 1 9 9 N 1.36928 * 119.99946 * 359.97438 * 7 2 1 10 10 C 1.46506 * 119.99837 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47130 * 179.97438 * 10 9 7 12 12 H 1.09005 * 109.47168 * 65.00456 * 11 10 9 13 13 N 1.46496 * 109.47387 * 305.00258 * 11 10 9 14 14 C 1.34777 * 120.00271 * 154.99671 * 13 11 10 15 15 O 1.21278 * 119.99854 * 0.02562 * 14 13 11 16 16 C 1.50703 * 120.00161 * 180.02562 * 14 13 11 17 17 C 1.53000 * 109.46912 * 180.02562 * 16 14 13 18 18 N 1.46499 * 109.46840 * 180.02562 * 17 16 14 19 19 C 1.34603 * 126.44181 * 125.00114 * 18 17 16 20 20 N 1.31063 * 106.68051 * 179.97438 * 19 18 17 21 21 N 1.28846 * 107.99460 * 359.97438 * 20 19 18 22 22 N 1.28736 * 109.39039 * 359.73712 * 21 20 19 23 23 C 1.53002 * 109.47248 * 185.00271 * 11 10 9 24 24 C 1.52997 * 109.47086 * 300.00331 * 23 11 10 25 25 C 1.53004 * 109.47383 * 179.97438 * 24 23 11 26 26 C 1.52997 * 109.46915 * 59.99691 * 25 24 23 27 27 C 1.52997 * 109.47347 * 300.00331 * 26 25 24 28 28 C 1.52997 * 109.47248 * 179.97438 * 23 11 10 29 29 H 0.97004 * 119.99910 * 359.97438 * 1 2 3 30 30 H 0.96994 * 120.00209 * 0.02562 * 9 7 2 31 31 H 1.09008 * 109.46780 * 60.00319 * 10 9 7 32 32 H 1.08998 * 109.47235 * 300.00372 * 10 9 7 33 33 H 0.97005 * 120.00266 * 335.00254 * 13 11 10 34 34 H 1.09002 * 109.47152 * 60.00245 * 16 14 13 35 35 H 1.09001 * 109.46980 * 300.00345 * 16 14 13 36 36 H 1.09001 * 109.47194 * 299.99742 * 17 16 14 37 37 H 1.08992 * 109.47399 * 59.99914 * 17 16 14 38 38 H 1.08005 * 126.65789 * 359.95977 * 19 18 17 39 39 H 1.09005 * 109.46885 * 60.00012 * 23 11 10 40 40 H 1.09005 * 109.46998 * 299.99612 * 24 23 11 41 41 H 1.09005 * 109.47389 * 59.99430 * 24 23 11 42 42 H 1.09003 * 109.46825 * 300.00425 * 25 24 23 43 43 H 1.09000 * 109.47250 * 179.97438 * 25 24 23 44 44 H 1.08999 * 109.47176 * 180.02562 * 26 25 24 45 45 H 1.09005 * 109.47168 * 60.00346 * 26 25 24 46 46 H 1.09003 * 109.47487 * 299.99936 * 27 26 25 47 47 H 1.08998 * 109.47684 * 179.97438 * 27 26 25 48 48 H 1.09000 * 109.47324 * 299.99993 * 28 23 11 49 49 H 1.09005 * 109.47168 * 60.00185 * 28 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2126 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 6 1.0638 -4.8197 -0.0008 12 1 0.4965 -4.8134 -0.9316 13 7 0.1456 -4.6763 1.1317 14 6 -1.0790 -5.2371 1.0816 15 8 -1.4206 -5.8608 0.0992 16 6 -2.0238 -5.0891 2.2463 17 6 -3.3345 -5.8144 1.9351 18 7 -4.2531 -5.6700 3.0671 19 6 -5.5069 -5.1823 3.0222 20 7 -5.9727 -5.2286 4.2464 21 7 -5.0532 -5.7195 5.0038 22 7 -4.0149 -5.9928 4.2933 23 6 1.8247 -6.1412 0.1238 24 6 2.7837 -6.2910 -1.0588 25 6 3.5452 -7.6122 -0.9340 26 6 2.5513 -8.7754 -0.9327 27 6 1.5923 -8.6256 0.2499 28 6 0.8304 -7.3040 0.1254 29 1 -0.4850 0.8401 0.0004 30 1 0.3556 -2.3880 -0.0005 31 1 2.6853 -3.7149 0.8879 32 1 2.6840 -3.7141 -0.8921 33 1 0.4188 -4.1777 1.9176 34 1 -2.2252 -4.0318 2.4187 35 1 -1.5717 -5.5229 3.1382 36 1 -3.7867 -5.3808 1.0431 37 1 -3.1328 -6.8715 1.7630 38 1 -6.0279 -4.8225 2.1471 39 1 2.3920 -6.1474 1.0546 40 1 2.2164 -6.2847 -1.9896 41 1 3.4920 -5.4624 -1.0595 42 1 4.1124 -7.6180 -0.0032 43 1 4.2280 -7.7191 -1.7768 44 1 3.0937 -9.7166 -0.8433 45 1 1.9840 -8.7696 -1.8635 46 1 2.1595 -8.6314 1.1808 47 1 0.8839 -9.4540 0.2506 48 1 0.1476 -7.1971 0.9682 49 1 0.2628 -7.2980 -0.8052 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271353190.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:18 Heat of formation + Delta-G solvation = 48.641921 kcal Electronic energy + Delta-G solvation = -29715.848006 eV Core-core repulsion = 25714.203478 eV Total energy + Delta-G solvation = -4001.644527 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -45.17336 -41.36805 -39.34516 -37.32814 -36.90425 -35.32023 -33.57824 -33.28847 -32.50916 -31.87722 -31.42830 -28.65403 -26.89554 -25.49331 -24.80963 -23.93509 -23.39304 -22.95507 -21.72716 -21.28178 -20.57519 -19.26868 -18.93622 -18.09892 -17.51914 -17.15748 -17.12256 -16.69866 -16.49503 -16.09394 -15.42812 -15.20528 -15.10225 -14.83436 -14.81983 -14.72904 -14.46293 -14.11863 -13.80568 -13.66676 -13.25099 -13.20830 -13.09852 -12.85498 -12.82992 -12.70674 -12.46228 -12.41605 -12.21089 -12.11799 -11.95469 -11.86808 -11.81715 -11.77293 -11.38442 -11.35759 -11.12793 -10.97253 -10.86727 -10.71701 -9.85730 -8.99534 -7.95152 -5.23139 0.27325 1.01216 1.22343 1.48867 1.49910 1.55971 1.64588 2.27106 2.55872 3.25260 3.39769 3.47387 3.58576 3.61774 3.72723 3.87103 3.88178 3.95412 4.11608 4.19054 4.28067 4.31754 4.36762 4.47812 4.50101 4.53706 4.60855 4.66423 4.68408 4.71228 4.75592 4.80466 4.82133 4.94844 5.04704 5.18065 5.22947 5.24212 5.32018 5.33614 5.37023 5.44596 5.48267 5.52514 5.59901 5.70734 6.26451 6.57407 7.24475 7.34744 7.55981 8.08261 8.32345 9.27437 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.006250 B = 0.004040 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4479.276314 B = 6929.682318 C =10989.584419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.068 4.068 3 Si 0.967 3.033 4 H -0.281 1.281 5 H -0.298 1.298 6 H -0.278 1.278 7 C -0.244 4.244 8 H 0.076 0.924 9 N -0.740 5.740 10 C 0.145 3.855 11 C 0.156 3.844 12 H 0.063 0.937 13 N -0.708 5.708 14 C 0.525 3.475 15 O -0.563 6.563 16 C -0.150 4.150 17 C 0.135 3.865 18 N -0.302 5.302 19 C 0.180 3.820 20 N -0.344 5.344 21 N -0.113 5.113 22 N -0.108 5.108 23 C -0.082 4.082 24 C -0.115 4.115 25 C -0.113 4.113 26 C -0.117 4.117 27 C -0.117 4.117 28 C -0.095 4.095 29 H 0.250 0.750 30 H 0.376 0.624 31 H 0.033 0.967 32 H 0.037 0.963 33 H 0.408 0.592 34 H 0.105 0.895 35 H 0.117 0.883 36 H 0.145 0.855 37 H 0.122 0.878 38 H 0.283 0.717 39 H 0.076 0.924 40 H 0.054 0.946 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.068 0.932 44 H 0.071 0.929 45 H 0.055 0.945 46 H 0.063 0.937 47 H 0.061 0.939 48 H 0.052 0.948 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.045 -17.567 0.299 17.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.261 4.261 3 Si 0.796 3.204 4 H -0.207 1.207 5 H -0.225 1.225 6 H -0.204 1.204 7 C -0.376 4.376 8 H 0.094 0.906 9 N -0.384 5.384 10 C 0.019 3.981 11 C 0.051 3.949 12 H 0.082 0.918 13 N -0.357 5.357 14 C 0.311 3.689 15 O -0.443 6.443 16 C -0.191 4.191 17 C 0.015 3.985 18 N -0.104 5.104 19 C -0.118 4.118 20 N -0.192 5.192 21 N -0.107 5.107 22 N -0.096 5.096 23 C -0.102 4.102 24 C -0.153 4.153 25 C -0.151 4.151 26 C -0.155 4.155 27 C -0.155 4.155 28 C -0.132 4.132 29 H 0.059 0.941 30 H 0.208 0.792 31 H 0.051 0.949 32 H 0.055 0.945 33 H 0.243 0.757 34 H 0.123 0.877 35 H 0.136 0.864 36 H 0.163 0.837 37 H 0.140 0.860 38 H 0.299 0.701 39 H 0.094 0.906 40 H 0.073 0.927 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.074 0.926 46 H 0.081 0.919 47 H 0.080 0.920 48 H 0.070 0.930 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.040 -18.185 0.976 18.241 hybrid contribution 0.165 1.784 -0.696 1.922 sum -0.876 -16.401 0.281 16.427 Atomic orbital electron populations 1.69783 1.06427 1.25977 1.59377 1.25440 0.96260 1.00706 1.03675 0.85315 0.77273 0.79665 0.78107 1.20697 1.22468 1.20419 1.19555 0.91498 0.85258 1.41305 0.90649 1.42469 1.05648 1.00782 1.89460 1.21140 0.93668 0.84224 0.99102 1.21085 0.90056 0.94461 0.89315 0.91834 1.45923 1.14851 1.54392 1.20561 1.20275 0.82156 0.78200 0.88232 1.90715 1.76467 1.42509 1.34630 1.21814 0.94361 1.04224 0.98683 1.22155 0.87499 1.05234 0.83624 1.48931 1.13580 1.39628 1.08265 1.28666 0.84360 0.98129 1.00611 1.74928 1.24433 1.18656 1.01213 1.78615 0.94777 1.13602 1.23695 1.78785 1.22028 1.18778 0.89968 1.21440 0.96303 0.92860 0.99641 1.21602 0.97927 0.98399 0.97388 1.21496 0.97608 0.93688 1.02292 1.21529 0.97276 0.98436 0.98248 1.21560 0.98261 0.96895 0.98758 1.21494 0.96601 0.93727 1.01403 0.94135 0.79212 0.94912 0.94489 0.75689 0.87681 0.86446 0.83674 0.85989 0.70150 0.90568 0.92724 0.91726 0.91579 0.91287 0.91069 0.92628 0.91874 0.92003 0.92974 0.93102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -55.97 13.06 21.65 0.28 -55.69 16 2 C -0.07 -3.71 5.50 84.86 0.47 -3.24 16 3 Si 0.97 44.21 29.55 68.60 2.03 46.24 16 4 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 5 H -0.30 -13.89 7.11 99.48 0.71 -13.19 16 6 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 7 C -0.24 -12.74 9.99 84.04 0.84 -11.90 16 8 H 0.08 3.78 7.83 -2.91 -0.02 3.75 16 9 N -0.74 -34.07 5.43 -343.44 -1.87 -35.94 16 10 C 0.15 5.06 5.31 86.38 0.46 5.52 16 11 C 0.16 4.48 2.00 44.99 0.09 4.57 16 12 H 0.06 2.17 7.58 -2.38 -0.02 2.15 16 13 N -0.71 -18.38 4.41 -442.54 -1.95 -20.33 16 14 C 0.52 12.44 6.18 87.66 0.54 12.98 16 15 O -0.56 -15.58 13.10 -3.02 -0.04 -15.62 16 16 C -0.15 -2.62 5.85 29.85 0.17 -2.44 16 17 C 0.14 1.87 5.77 86.38 0.50 2.37 16 18 N -0.30 -5.38 3.44 -351.83 -1.21 -6.59 16 19 C 0.18 2.88 12.79 180.27 2.31 5.18 16 20 N -0.34 -8.58 12.36 -60.29 -0.74 -9.33 16 21 N -0.11 -3.23 13.43 37.01 0.50 -2.74 16 22 N -0.11 -2.69 13.08 37.02 0.48 -2.20 16 23 C -0.08 -1.90 1.96 -10.79 -0.02 -1.92 16 24 C -0.12 -2.51 4.85 30.59 0.15 -2.36 16 25 C -0.11 -1.99 5.92 30.59 0.18 -1.81 16 26 C -0.12 -1.98 5.92 30.59 0.18 -1.80 16 27 C -0.12 -2.13 5.92 30.61 0.18 -1.95 16 28 C -0.09 -2.12 3.73 30.61 0.11 -2.01 16 29 H 0.25 14.23 8.31 -92.70 -0.77 13.46 16 30 H 0.38 18.54 7.33 -92.71 -0.68 17.86 16 31 H 0.03 1.11 8.14 -2.38 -0.02 1.09 16 32 H 0.04 1.31 6.71 -2.39 -0.02 1.30 16 33 H 0.41 10.35 8.60 -92.70 -0.80 9.55 16 34 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.15 1.46 8.04 -2.39 -0.02 1.44 16 37 H 0.12 1.57 8.10 -2.39 -0.02 1.55 16 38 H 0.28 1.19 8.06 -2.91 -0.02 1.17 16 39 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 40 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 41 H 0.06 1.47 6.54 -2.38 -0.02 1.45 16 42 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.07 1.09 8.14 -2.39 -0.02 1.08 16 44 H 0.07 1.00 8.14 -2.39 -0.02 0.99 16 45 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 46 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 48 H 0.05 1.22 5.78 -2.39 -0.01 1.20 16 49 H 0.05 1.34 7.53 -2.38 -0.02 1.33 16 Total: -1.00 -70.34 390.85 3.14 -67.21 By element: Atomic # 1 Polarization: 34.30 SS G_CDS: -0.51 Total: 33.79 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: 6.16 Total: 1.20 kcal Atomic # 7 Polarization: -128.31 SS G_CDS: -4.51 Total: -132.81 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: -0.04 Total: -15.62 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -70.34 3.14 -67.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271353190.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.851 kcal (2) G-P(sol) polarization free energy of solvation -70.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds